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Search of human proteins with 169204821
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens] 343 4e-95
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens] 343 4e-95
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens] 343 4e-95
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 50 1e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 1e-06
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 47 9e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 46 1e-05
gi|223468617 family with sequence similarity 75, member C1 [Homo... 45 2e-05
gi|157168329 formin 1 [Homo sapiens] 45 3e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens] 44 5e-05
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 44 6e-05
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 44 6e-05
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 43 1e-04
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 43 1e-04
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 43 1e-04
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 43 1e-04
gi|119220552 sidekick 1 [Homo sapiens] 42 2e-04
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 2e-04
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 42 3e-04
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 41 4e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens] 41 4e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 41 4e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 41 5e-04
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 41 5e-04
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 41 5e-04
gi|149408146 TOX high mobility group box family member 2 isoform... 41 5e-04
gi|149408144 TOX high mobility group box family member 2 isoform... 41 5e-04
>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 343 bits (880), Expect = 4e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 343 bits (880), Expect = 4e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 343 bits (880), Expect = 4e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1 MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 49.7 bits (117), Expect = 1e-06
Identities = 46/133 (34%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 6 GRDAGRG-------PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP 58
GR AGRG P A G V G P ++ P RG+V AA A+
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAA-----AAATA 159
Query: 59 GLLGAPAPAPALTQHPSLPQGAGALPAGRRRPD---RPRPAPPWPLSP---RPSHLPSRV 112
+ GAP P P P G GA P G P RP PP + P P +P
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP-P 218
Query: 113 SAAPPPAGSRGLL 125
PPP G RGLL
Sbjct: 219 GMRPPPPGMRGLL 231
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 49.3 bits (116), Expect = 1e-06
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 22 QVTGPARPFHRLRPPDTHPRGSVHAAGVLDG-LASGRP-GLLGAPAPAPALTQHPSLPQG 79
Q+ A H L P R + AAG L + SG P G GA APA + P+
Sbjct: 32 QLAASAAHHHHLAPRTPEVRAA--AAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEP 89
Query: 80 AGALPAGRRRPDRPRPAPPWPLSPRPSHLPS-----RVSAAPPPAGSRGLLETQDTSGFA 134
PAGR RP P P P SPR +P+ PPP GS G +
Sbjct: 90 P---PAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146
Query: 135 SPGRRPRDRRPARRCGCA 152
+ G P PA+ G A
Sbjct: 147 AAGPEPAPAGPAKPAGPA 164
Score = 37.7 bits (86), Expect = 0.004
Identities = 45/138 (32%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVT------------GPARPFHRLRPPDTHPRGSVHAAGV 49
P AA G A G G Q GPA P +LRPP P GS +
Sbjct: 83 PGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPP---PEGSAGSCAP 139
Query: 50 LDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLP 109
+ A+ G P PAPA P+ P G AL A R P P P P P P
Sbjct: 140 VPAAAAVAAG----PEPAPA---GPAKPAGPAALAA--RAGPGPGPGPGPGPGPGPGK-P 189
Query: 110 SRVSAAPPPAGSRGLLET 127
+ AA GS LL +
Sbjct: 190 AGPGAAQTLNGSAALLNS 207
Score = 37.7 bits (86), Expect = 0.004
Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
P A PA A P P RPP HP G AA + A+ + G
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG-HPAGPPTAAPAVPPPAAAQNGGS 308
Query: 62 GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGS 121
APAPA P G PAG P A P + P RV A PPA
Sbjct: 309 AGAAPAPA-------PAAGG--PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA- 358
Query: 122 RGLLETQDTSGFAS 135
+T SG AS
Sbjct: 359 ----QTLAASGPAS 368
Score = 35.8 bits (81), Expect = 0.016
Identities = 46/168 (27%), Positives = 59/168 (35%), Gaps = 30/168 (17%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSV----HAAGVLDGLASGR 57
P A AG GP G G GP +P + ++ HAA L +
Sbjct: 163 PAALAARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNG 221
Query: 58 PGLLGAPAPAPA-----LTQHPSLPQGAGALPAGRRRPDRPRPA------PPWPLSP--- 103
P L P P PA + P + A PA P P PA PP P +P
Sbjct: 222 PAAL-LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 104 -----RPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPA 146
P+ P+ A PPPA ++ S A+P P PA
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQ-----NGGSAGAAPAPAPAAGGPA 323
Score = 30.4 bits (67), Expect = 0.68
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 58 PGLLGAPAP-APALTQHPSLPQGAGALPAGRRRPDRPRPA----PPWPLSPRPSHLPS-- 110
P +GA AP APA P+ P A A PA P P PA PP + P+ P+
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAP--APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298
Query: 111 ---------RVSAAPPPAGSRGLLETQDTSGFASPG 137
AAP PA + G SG PG
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAG--GPAGVSGQPGPG 332
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 9e-06
Identities = 44/131 (33%), Positives = 51/131 (38%), Gaps = 21/131 (16%)
Query: 6 GRDAGRG-------PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP 58
GR AGRG P A G V G P ++ P RG+V AA A+
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAA-----AAATA 159
Query: 59 GLLGAPAPAPALTQHPSLPQGAGALPAGRRRPD---RPRPAPPWPLSP---RPSHLPSRV 112
+ GAP P P P G GA P G P RP PP + P P +P
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP-P 218
Query: 113 SAAPPPAGSRG 123
PPP G RG
Sbjct: 219 GMRPPPPGMRG 229
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 46.2 bits (108), Expect = 1e-05
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 62 GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPA-- 119
G P +P T P P P ++ P P PAPP P P P R A PP A
Sbjct: 8 GRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAAD 67
Query: 120 --GSRGLLETQDTS 131
G RG L ++D+S
Sbjct: 68 EGGPRGRLRSRDSS 81
Score = 30.0 bits (66), Expect = 0.88
Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 53 LASGRPGLLGAPAPAPALTQH------PSLPQGAGALPAGRRR------PDRPRPAPPWP 100
LA G P L+ P P PA P+ P GA A P R P P P P
Sbjct: 750 LALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALP 809
Query: 101 LS-------PRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARR 148
P + PS AP PA S + +P R P RR
Sbjct: 810 ARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRR 864
Score = 28.5 bits (62), Expect = 2.6
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 57 RPGLLGAPAPAPALTQHPSLPQGA--------------GALPAG-----RRRPDRPRPAP 97
R GL P P P +T + Q A G L G RR P P PA
Sbjct: 710 RVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPGPAPAA 769
Query: 98 PWPLSPRPSHLP-SRVSAAPPPAGSRGLLETQDTSGFASPGRR-PRDRRP 145
P P P+ P + S P G L +G A P RR R RP
Sbjct: 770 ASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRP 819
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 45.4 bits (106), Expect = 2e-05
Identities = 40/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 12 GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
GP +G Q++GP P R PD R S AA ++ LAS P L
Sbjct: 118 GPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPMEDAAPIVSPLASPDPRTKHPQDL 177
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
P P P T SL A P +RP P PP L P P H P ++ +PPP
Sbjct: 178 ASTPPPGPMTTSVSSL--SASQPPEPSLLLERPSPEPP-ALFPHPPHTPDPLACSPPP 232
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 44.7 bits (104), Expect = 3e-05
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 32 RLRPPDTHPRGSVHAA-GVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRP 90
+L PP+ H +HAA ++G+AS + L P P ++ P LP G G+L P
Sbjct: 617 QLSPPNDHK--DIHAALQPMEGMASNQQKAL--PPPPASIPPPPPLPSGLGSLSPAPPMP 672
Query: 91 DRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
P P P P LP SA PPP
Sbjct: 673 PVSAGPPLPPPPPPPPPLPPPSSAGPPP 700
Score = 37.0 bits (84), Expect = 0.007
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 35 PPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPR 94
PP GS+ A + +++G P L P P P L P AG P P
Sbjct: 656 PPLPSGLGSLSPAPPMPPVSAGPP-LPPPPPPPPPLPP----PSSAGPPPPPPPPPLPNS 710
Query: 95 PAPPWPLSPRPSHLPSRVSAAPPPAGSRGL 124
PAPP P P P+ P ++ PPP GL
Sbjct: 711 PAPPNPGGPPPAPPPPGLAPPPPPGLFFGL 740
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 44.3 bits (103), Expect = 5e-05
Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 35 PPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPR 94
PP T P+ AG+ G A P A P AL + P P GA PA + P
Sbjct: 1276 PPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPA--KPPSPGA 1333
Query: 95 PAPPWPLSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDR 143
PA P P + + +AA PPA G ASPG R +
Sbjct: 1334 PALHVPAKPPRAAAAAAAAAAAPPAPPEG----------ASPGDSARQK 1372
Score = 30.0 bits (66), Expect = 0.88
Identities = 46/175 (26%), Positives = 59/175 (33%), Gaps = 34/175 (19%)
Query: 2 PKAAGRDAGRGP------------AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGV 49
PKA R+AG P RR + GP P + P H +
Sbjct: 1152 PKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPL 1211
Query: 50 LDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRP---------DRPRPAPPWP 100
R +P P LTQ QG+ P ++ P R PP P
Sbjct: 1212 PPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPT-PTSKKVPLPGPGSPEVKRAHGTPP-P 1269
Query: 101 LSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARRCGCACAR 155
+SP+P P +A P GL SG A P P PAR+ A A+
Sbjct: 1270 VSPKP---PPPPTAPKPVKAVAGL-----PSGSAGPSPAP---SPARQPPAALAK 1313
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 43.9 bits (102), Expect = 6e-05
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 40/143 (27%)
Query: 4 AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
AA + R P + G G + P PP PRG+ P + A
Sbjct: 73 AAAQPRRRSPGPQGGGGGDIASPL-------PPALQPRGA--------------PAVPAA 111
Query: 64 PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
P+P P LPA RP P P P P P LP AAP P +R
Sbjct: 112 PSPGP--------------LPA---RPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154
Query: 124 LLETQDTSGFASPGRRPRDRRPA 146
L + T+ +RPR RR A
Sbjct: 155 LPQGSVTA--REQEQRPRSRRRA 175
Score = 37.4 bits (85), Expect = 0.006
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 14 AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
AAR GA ++ G R R+R P G L + +G G+ APA A PA
Sbjct: 7 AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61
Query: 72 QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
+ P+ PQG G P +PR AP P +P P LP+R
Sbjct: 62 ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121
Query: 113 SAAPP 117
S+ PP
Sbjct: 122 SSPPP 126
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 43.9 bits (102), Expect = 6e-05
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 40/143 (27%)
Query: 4 AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
AA + R P + G G + P PP PRG+ P + A
Sbjct: 73 AAAQPRRRSPGPQGGGGGDIASPL-------PPALQPRGA--------------PAVPAA 111
Query: 64 PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
P+P P LPA RP P P P P P LP AAP P +R
Sbjct: 112 PSPGP--------------LPA---RPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154
Query: 124 LLETQDTSGFASPGRRPRDRRPA 146
L + T+ +RPR RR A
Sbjct: 155 LPQGSVTA--REQEQRPRSRRRA 175
Score = 37.4 bits (85), Expect = 0.006
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 14 AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
AAR GA ++ G R R+R P G L + +G G+ APA A PA
Sbjct: 7 AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61
Query: 72 QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
+ P+ PQG G P +PR AP P +P P LP+R
Sbjct: 62 ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121
Query: 113 SAAPP 117
S+ PP
Sbjct: 122 SSPPP 126
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 42.7 bits (99), Expect = 1e-04
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 12 GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
GP +G Q++GP P R PD + S AA +L LAS P L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
P+P P T SL A P + P P PP L P P H P ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 42.7 bits (99), Expect = 1e-04
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 12 GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
GP +G Q++GP P R PD + S AA +L LAS P L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
P+P P T SL A P + P P PP L P P H P ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 42.7 bits (99), Expect = 1e-04
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 7 RDAGRGPAARRGAGMQVTGPARPFHRLRPPDTH---------PRGSVHAAGVLDGLASGR 57
R GR P AG QV P + L+ P H P G++ + LA
Sbjct: 839 RGLGRKPLDISVAGSQVHSPG--INPLKSPTMHQVQSPMLGSPSGNLKSPQTPSQLA--- 893
Query: 58 PGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPP 117
G+L PA A ++ P L A A P + P P P+P W SP+P P + PP
Sbjct: 894 -GMLAGPAAAASIKSPPVLGSAA-ASPVHLKSPSLPAPSPGWTSSPKP---PLQSPGIPP 948
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 42.7 bits (99), Expect = 1e-04
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 12 GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
GP +G Q++GP P R PD + S AA +L LAS P L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
P+P P T SL A P + P P PP L P P H P ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 79 GAGALPAGRRRPDRPRPAPPW----PLSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFA 134
G GA P R P RPR +PP L+PRP PSR AAP +G DT+G
Sbjct: 14 GGGAEPPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETSGG-------DTAGAG 66
Query: 135 -SPGRRPRDRRPARR 148
GRR P RR
Sbjct: 67 RCGGRRAAKLGPGRR 81
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 42.4 bits (98), Expect = 2e-04
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 14 AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
AAR GA ++ G R R+R P G L + +G G+ APA A PA
Sbjct: 7 AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61
Query: 72 QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
+ P+ PQG G P +PR AP P +P P LP+R
Sbjct: 62 ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121
Query: 113 SAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARR 148
S+ PP S + Q + P + PR P+ R
Sbjct: 122 SSPPPSPPSPPVPTAQSSLPAPWPPQGPRSPAPSLR 157
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.0 bits (97), Expect = 2e-04
Identities = 47/159 (29%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 1 MPKAAGRDAGRGPAARRGAGMQV--TGPARPFHRLRPPD----THPRGSVHAAGVLDGLA 54
+P GR GPA RG+ V GPA P PP P+G + A G
Sbjct: 218 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
Query: 55 S-------GRPGLLGAPAP-----APALTQHPSLPQGAGALPAGRRRPDRPRPAP-PWPL 101
G PGL G P A LT +GA LP P P P P P+
Sbjct: 278 PAGPRGEVGLPGLSGPVGPPGNPGANGLTG----AKGAAGLPGVAGAPGLPGPRGIPGPV 333
Query: 102 SPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRP 140
+ + P PAGS+G + G A P P
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPP 372
Score = 34.7 bits (78), Expect = 0.036
Identities = 35/133 (26%), Positives = 43/133 (32%), Gaps = 24/133 (18%)
Query: 4 AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
AAG G+G G ++ P R DG A G PG +GA
Sbjct: 647 AAGIPGGKGEKGEPGLRGEIGNPGR----------------------DG-ARGAPGAVGA 683
Query: 64 PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
P PA A A PAG R R P P P+ + P G RG
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGER-GEVGPAGPNGFAGPAGAAGQPGAKGERG 742
Query: 124 LLETQDTSGFASP 136
+ +G P
Sbjct: 743 AKGPKGENGVVGP 755
Score = 30.8 bits (68), Expect = 0.52
Identities = 42/141 (29%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
P GRD GP TGP P PP + G GL G GL+
Sbjct: 47 PGPPGRDGEDGP----------TGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLM 96
Query: 62 GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPP----WPLSPRPSHLPSRVSAAPP 117
G P P P PQG PAG P P P P P P
Sbjct: 97 GPRGP-PGAAGAPG-PQGFQG-PAG--EPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPG 151
Query: 118 PAGSRGLLETQDTSGF-ASPG 137
G RG++ Q GF +PG
Sbjct: 152 RPGERGVVGPQGARGFPGTPG 172
Score = 29.6 bits (65), Expect = 1.2
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 33/144 (22%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
P A G +G A G P P R P G V AAG A+G GL+
Sbjct: 300 PGANGLTGAKGAAGLPGVA---GAPGLPGPRGIP------GPVGAAG-----ATGARGLV 345
Query: 62 GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPS-RVSAAPPPA- 119
G P PA + + + + A P G PP P P+ +A PP
Sbjct: 346 GEPGPAGSKGESGNKGEPGSAGPQG----------PPGPSGEEGKRGPNGEAGSAGPPGP 395
Query: 120 -------GSRGLLETQDTSGFASP 136
GSRGL +G P
Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGP 419
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 2e-04
Identities = 49/156 (31%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
P A R +G + G G Q GP P + RPP P+G H +G+ G +G P
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGP--PLQQ-RPP---PQGQQHLSGL--GPPAGSP--- 503
Query: 62 GAPAPAPALTQHPSLPQGAGALPA-GRRRPDRPRPAPPW-PLSPRPSHLPSRVSAAPPPA 119
P P+ T P P A P G+ R RP P P + RP PS A PP
Sbjct: 504 -LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562
Query: 120 GSRGLLETQDTSGFAS---PGRRPRDRRPARRCGCA 152
+R + AS PG + R P + G A
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA 598
Score = 31.6 bits (70), Expect = 0.30
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 67 APALTQHPSLPQGAGALPAGRRRPDRP-------RPAPPWPLSPRPSHLPSR----VSAA 115
+P H P GALP GR+ +P RP PP P+P P R +
Sbjct: 427 SPGRGSHGQTPS-PGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGPQRQGPPLQQR 484
Query: 116 PPPAGSRGLLETQDTSGFASPGRRP 140
PPP G + L +G P R P
Sbjct: 485 PPPQGQQHLSGLGPPAGSPLPQRLP 509
Score = 29.6 bits (65), Expect = 1.2
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 2 PKAAGRDAGRGPAARRGAGMQV----TGPARPFHRLRPPDT-HPRGSVHAAGVLDGLASG 56
P+ +G GP A ++ + P +P + PP R S AG +
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAA 546
Query: 57 RPGLLGAP---APAPALTQH-----PSLPQGAGALPAGRRRPDRPRPAPPWPLSP-RPSH 107
RP +P A P T+ P+ P+ +GA P G++R P+ PP P P R +
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ-KPPGPAGPTRQAS 605
Query: 108 LPSRVSAAPPP 118
V PP
Sbjct: 606 QAGPVPRTGPP 616
Score = 29.6 bits (65), Expect = 1.2
Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 16/122 (13%)
Query: 3 KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPR---GSVHAAGVLDGLASGRPG 59
+AA G+G +R AG GP P P P+ G A P
Sbjct: 521 QAAPPTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576
Query: 60 LLGAPAPAPALTQHPSLPQG-AGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
GAP P P G AG + PR PP PRPS P P
Sbjct: 577 ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS--------GPGP 628
Query: 119 AG 120
AG
Sbjct: 629 AG 630
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.0 bits (97), Expect = 2e-04
Identities = 49/156 (31%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
P A R +G + G G Q GP P + RPP P+G H +G+ G +G P
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGP--PLQQ-RPP---PQGQQHLSGL--GPPAGSP--- 503
Query: 62 GAPAPAPALTQHPSLPQGAGALPA-GRRRPDRPRPAPPW-PLSPRPSHLPSRVSAAPPPA 119
P P+ T P P A P G+ R RP P P + RP PS A PP
Sbjct: 504 -LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562
Query: 120 GSRGLLETQDTSGFAS---PGRRPRDRRPARRCGCA 152
+R + AS PG + R P + G A
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA 598
Score = 31.6 bits (70), Expect = 0.30
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 67 APALTQHPSLPQGAGALPAGRRRPDRP-------RPAPPWPLSPRPSHLPSR----VSAA 115
+P H P GALP GR+ +P RP PP P+P P R +
Sbjct: 427 SPGRGSHGQTPS-PGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGPQRQGPPLQQR 484
Query: 116 PPPAGSRGLLETQDTSGFASPGRRP 140
PPP G + L +G P R P
Sbjct: 485 PPPQGQQHLSGLGPPAGSPLPQRLP 509
Score = 29.6 bits (65), Expect = 1.2
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 2 PKAAGRDAGRGPAARRGAGMQV----TGPARPFHRLRPPDT-HPRGSVHAAGVLDGLASG 56
P+ +G GP A ++ + P +P + PP R S AG +
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAA 546
Query: 57 RPGLLGAP---APAPALTQH-----PSLPQGAGALPAGRRRPDRPRPAPPWPLSP-RPSH 107
RP +P A P T+ P+ P+ +GA P G++R P+ PP P P R +
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ-KPPGPAGPTRQAS 605
Query: 108 LPSRVSAAPPP 118
V PP
Sbjct: 606 QAGPVPRTGPP 616
Score = 29.6 bits (65), Expect = 1.2
Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 16/122 (13%)
Query: 3 KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPR---GSVHAAGVLDGLASGRPG 59
+AA G+G +R AG GP P P P+ G A P
Sbjct: 521 QAAPPTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576
Query: 60 LLGAPAPAPALTQHPSLPQG-AGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
GAP P P G AG + PR PP PRPS P P
Sbjct: 577 ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS--------GPGP 628
Query: 119 AG 120
AG
Sbjct: 629 AG 630
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 41.6 bits (96), Expect = 3e-04
Identities = 48/139 (34%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 26 PARPFHRLRPPDTHPR----GSVHAAGVLDGLASGR---PGLLG-APAPAPALTQHPSLP 77
PA+P L PP T PR G+ + L A P LG AP P PA+ Q P
Sbjct: 467 PAQPGATLAPP-TPPRPRDGGTPRHSRALSWAARAARPLPLFLGRAPPPRPAVEQPPPKV 525
Query: 78 QGAGALPAGRRRPDRPRPAPPWP------LSPRPSHLPSRVSAAPPPAGSRGLLETQDTS 131
P R P P P PWP L PRP LP RV PP R + T
Sbjct: 526 YVTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRP--LP-RVQLRAPPRPPRP--HGRRTG 580
Query: 132 GFASPGRRPRDRRPARRCG 150
G + RP R A + G
Sbjct: 581 GPQATQPRPPARAQATQGG 599
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 41.2 bits (95), Expect = 4e-04
Identities = 46/151 (30%), Positives = 55/151 (36%), Gaps = 19/151 (12%)
Query: 3 KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLG 62
K R A A G G++ GPA P G+V V G GRPG +
Sbjct: 50 KEKERKAALPAATTPGPGLETAGPADA----------PAGAV----VGGGSPRGRPGPVP 95
Query: 63 APAPAPALTQHPSLPQGAGA---LPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPA 119
AP L +LP G L A P P+PP P P P P+R A P
Sbjct: 96 APGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLP-PSPPPPGGPSPEPSPARTPAPSPGP 154
Query: 120 GSRGLLETQDTSGFASPGRRPRDRRPARRCG 150
GS G + + G A P R R G
Sbjct: 155 GSCGSASPRSSPGHA-PARAALGTASGHRAG 184
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 41.2 bits (95), Expect = 4e-04
Identities = 39/127 (30%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 12 GPAARRGAGMQVTGPARPFH---RLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAP 68
G A G G + ARP +LRPP P+G+V A+G A+G+P G P P
Sbjct: 561 GQQAPPGLGPILEDQARPSQNLLQLRPPQPQPQGTVGASG-----ATGQPQPQGTAQPPP 615
Query: 69 ALTQHPSLPQGAGALPAGRRRPDRP-----------RPAPPWPLSPRPS----HL--PSR 111
Q P P RP P P PP P P HL P
Sbjct: 616 GAPQGPPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGA 675
Query: 112 VSAAPPP 118
+ PPP
Sbjct: 676 PALLPPP 682
Score = 30.4 bits (67), Expect = 0.68
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 13 PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGV-----LDGLASGRPGLLGAPAPA 67
PAA GA + P +P + PP G++ AA V ++ + + GL P +
Sbjct: 249 PAAPSGATLSAA-PQQPLPPV-PPQYQVPGNLSAAQVAAQNAVEAAKNQKAGL--GPRFS 304
Query: 68 PALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
P + P G G + P P P PP P P+ PS VS P +G
Sbjct: 305 PITPLQQAAP-GVGPPFSQAPAPQLP-PGPPGAPKPPPASQPSLVSTVAPGSG 355
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 41.2 bits (95), Expect = 4e-04
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 7 RDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAP 66
R+A R RRGA T PA P PRG+ AA A+ P AP P
Sbjct: 94 RNAARVQPPRRGA----TPPA--------PPRAPRGAPAAA------AAAAPPPTPAPPP 135
Query: 67 APALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPR------PSHLPSRVSAAPPPAG 120
PA + + A A P P PA P P + R P P+ A PPAG
Sbjct: 136 PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
Query: 121 SR 122
R
Sbjct: 196 PR 197
Score = 31.6 bits (70), Expect = 0.30
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 57 RPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAP 116
+P GA PAP P P+GA A A PP P P P P+ V+AA
Sbjct: 100 QPPRRGATPPAP-----PRAPRGAPAAAAAAA-------PPPTPAPPPP---PAPVAAAA 144
Query: 117 P---PAGSRGLLETQDTSGFASPGRRPRDRRP 145
P P + + G A PG R + P
Sbjct: 145 PARAPRAAAAAATAPPSPGPAQPGPRAQRAAP 176
Score = 31.6 bits (70), Expect = 0.30
Identities = 41/143 (28%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 9 AGRGPA-ARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP-------GL 60
A PA A R A T P P P PR A A P G
Sbjct: 141 AAAAPARAPRAAAAAATAPPSP----GPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGP 196
Query: 61 LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
AP PA A + P P P +++P P+P PP P R A P
Sbjct: 197 RRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPP------PEGGAVRAGGAARPVS 250
Query: 121 SRGLLETQDTSGFASPGRRPRDR 143
R ++ SG A GR R R
Sbjct: 251 LREVVRYLGGSGGAG-GRLTRGR 272
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 40.8 bits (94), Expect = 5e-04
Identities = 46/128 (35%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 2 PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHP--RGSVHAAGVL-DGLASGRP 58
P AG+ R P G GP P L PP P RG VL G G+P
Sbjct: 229 PFPAGQTPPRPPLGPPGPPGP-PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP 287
Query: 59 GL----LGAPAPAPALTQHPSLP--QGAGALPAGRRRPDRPRP-APPWPLSPRPSHLPSR 111
L G P P P P P Q P G P P P PP L+P P HLP
Sbjct: 288 PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAP-PPHLPGP 346
Query: 112 VSAAPPPA 119
APPPA
Sbjct: 347 PPGAPPPA 354
Score = 35.4 bits (80), Expect = 0.021
Identities = 41/137 (29%), Positives = 48/137 (35%), Gaps = 16/137 (11%)
Query: 5 AGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAP 64
+G+ +G G A G + P R R P P G G G G P
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP---------GPAGPGGPP 227
Query: 65 APAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRP-SHLPSRVSAAPPPAGSRG 123
P PA P P G P G P P P PP + P P + P+R PPP G
Sbjct: 228 PPFPAGQTPPRPPLG----PPGP--PGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 124 LLETQDTSGFASPGRRP 140
Q G PG P
Sbjct: 282 QPFGQPPLGPLPPGPPP 298
Score = 34.3 bits (77), Expect = 0.047
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 58 PGLLGAP---APAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSA 114
PG LG P AP P L P P GA P P P + P S +P+ S
Sbjct: 328 PGPLGPPLTLAPPPHL---PGPPPGAP--------PPAPHVNPAFFPPPTNSGMPTSDSR 376
Query: 115 APPPAGSRGLLETQDTSGFASPGR 138
PPP G D + PGR
Sbjct: 377 GPPPTDPYGRPPPYDRGDYGPPGR 400
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 40.8 bits (94), Expect = 5e-04
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 14 AARRGAGMQVTGPARP----FHRLRPPDTHPRGSV-HAAGVLDGLASGRPGLLGAPAPAP 68
A+ G G ++ GP RP RPP RGS HAAG + P L PAP P
Sbjct: 5 ASAAGLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGA----SFPAPAQLLLPAPPP 60
Query: 69 ALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSR 122
SL G P R PAPP + R A PPPA SR
Sbjct: 61 G--SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGG------DAHPPPAFSR 106
Score = 28.9 bits (63), Expect = 2.0
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 79 GAGALPAGRRRPDRP-----RP------APPWPLSPRPSHLPSRVSAAPPPAGSRGLLET 127
G GA G RRP P RP PW + P+++ PP GSR
Sbjct: 9 GLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSR----- 63
Query: 128 QDTSGFASPGRRPRDRRPARR 148
S ++PGR P ARR
Sbjct: 64 --VSLGSAPGRPPPPALAARR 82
>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
sapiens]
Length = 144
Score = 40.8 bits (94), Expect = 5e-04
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 14 AARRGAGMQVTGPARP----FHRLRPPDTHPRGSV-HAAGVLDGLASGRPGLLGAPAPAP 68
A+ G G ++ GP RP RPP RGS HAAG + P L PAP P
Sbjct: 5 ASAAGLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGA----SFPAPAQLLLPAPPP 60
Query: 69 ALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSR 122
SL G P R PAPP + R A PPPA SR
Sbjct: 61 G--SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGG------DAHPPPAFSR 106
Score = 28.9 bits (63), Expect = 2.0
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 79 GAGALPAGRRRPDRP-----RP------APPWPLSPRPSHLPSRVSAAPPPAGSRGLLET 127
G GA G RRP P RP PW + P+++ PP GSR
Sbjct: 9 GLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSR----- 63
Query: 128 QDTSGFASPGRRPRDRRPARR 148
S ++PGR P ARR
Sbjct: 64 --VSLGSAPGRPPPPALAARR 82
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 40.8 bits (94), Expect = 5e-04
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 52 GLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRR----PDRPRPAPPWPLSPRPSH 107
G S PGL +P P P+ P+L Q P + P PAP P+ P P
Sbjct: 360 GSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPVLPTPMA 419
Query: 108 LPSRVSAAPPPAGSRG---LLETQDTSGFASPG-RRPR------DRRPARRCGCACARLW 157
L +++ +P P G + + E +SG SPG P P+ CG + L
Sbjct: 420 LQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGPSNPTSSGDWDSSYPSGECGISTCSLL 479
Query: 158 P 158
P
Sbjct: 480 P 480
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 40.8 bits (94), Expect = 5e-04
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 52 GLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRR----PDRPRPAPPWPLSPRPSH 107
G S PGL +P P P+ P+L Q P + P PAP P+ P P
Sbjct: 378 GSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPVLPTPMA 437
Query: 108 LPSRVSAAPPPAGSRG---LLETQDTSGFASPG-RRPR------DRRPARRCGCACARLW 157
L +++ +P P G + + E +SG SPG P P+ CG + L
Sbjct: 438 LQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGPSNPTSSGDWDSSYPSGECGISTCSLL 497
Query: 158 P 158
P
Sbjct: 498 P 498
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,868,326
Number of Sequences: 37866
Number of extensions: 770001
Number of successful extensions: 10224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 1373
Number of HSP's that attempted gapping in prelim test: 5973
Number of HSP's gapped (non-prelim): 4327
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.