Guide to the Human Genome
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Name: LOC100287437 Sequence: fasta or formatted (144aa) NCBI GI: 239741134
Description:

PREDICTED: hypothetical protein XP_002342117

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.8         27           2
 C cysteine            1.4          2           1
 D aspartate           0.7          1           1
 E glutamate           2.1          3           1
 F phenylalanine       1.4          2           1
 G glycine            13.2         19           2
 H histidine           2.8          4           1
 I isoleucine          1.4          2           1
 K lysine              0.7          1           1
 L leucine            10.4         15           3
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            18.8         27           4
 Q glutamine           1.4          2           1
 R arginine           11.1         16           3
 S serine              9.0         13           2
 T threonine           1.4          2           1
 V valine              3.5          5           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342117 
LOC100290551          1.000   PREDICTED: hypothetical protein XP_002346417 
SAMD1                 0.110   sterile alpha motif domain containing 1 
CASKIN1               0.103   CASK interacting protein 1 
TAF4                  0.095   TBP-associated factor 4 
LOC390595             0.084   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.084   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.084   PREDICTED: hypothetical protein 
DCAF10                0.081   WD repeat domain 32 
WIPF2                 0.081   WIRE protein 
C6orf132              0.077   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.077   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.077   PREDICTED: hypothetical protein LOC647024 
RANBP9                0.077   RAN binding protein 9 
WASF2                 0.073   WAS protein family, member 2 
FMN2                  0.073   formin 2 
SF3A2                 0.073   splicing factor 3a, subunit 2 
WASL                  0.070   Wiskott-Aldrich syndrome gene-like protein 
C10orf95              0.070   hypothetical protein LOC79946 
ADAM15                0.070   a disintegrin and metalloproteinase domain 15 isofor...
WIPF3                 0.070   WAS/WASL interacting protein family, member 3 [Homo...
LOC100131102          0.070   PREDICTED: hypothetical protein 
LOC100131102          0.070   PREDICTED: hypothetical protein 
MLL                   0.066   myeloid/lymphoid or mixed-lineage leukemia protein [...
ADAM15                0.066   a disintegrin and metalloproteinase domain 15 isofor...
IRX5                  0.066   iroquois homeobox protein 5 
WBP11                 0.066   WW domain binding protein 11 
BBC3                  0.062   BCL2 binding component 3 isoform 1 
GLTSCR1               0.062   glioma tumor suppressor candidate region gene 1 [Ho...
DIAPH1                0.062   diaphanous 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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