Guide to the Human Genome
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Name: TOX2 Sequence: fasta or formatted (488aa) NCBI GI: 149408146
Description:

TOX high mobility group box family member 2 isoform b

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [464aa] TOX high mobility group box family member 2 isoform c
alt prot [464aa] TOX high mobility group box family member 2 isoform c
alt prot [506aa] TOX high mobility group box family member 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         40           2
 C cysteine            1.4          7           1
 D aspartate           3.9         19           1
 E glutamate           4.1         20           3
 F phenylalanine       2.7         13           2
 G glycine             7.2         35           1
 H histidine           2.7         13           1
 I isoleucine          2.7         13           1
 K lysine              4.5         22           6
 L leucine            10.2         50           4
 M methionine          3.5         17           1
 N asparagine          2.5         12           2
 P proline            13.3         65           5
 Q glutamine           5.9         29           2
 R arginine            2.5         12           1
 S serine             15.2         74           3
 T threonine           4.1         20           1
 V valine              2.7         13           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TOX high mobility group box family member 2 isoform... 
TOX2                  0.897   TOX high mobility group box family member 2 isoform...
TOX2                  0.875   TOX high mobility group box family member 2 isoform...
TOX2                  0.875   TOX high mobility group box family member 2 isoform ...
TOX                   0.313   thymus high mobility group box protein TOX 
TOX3                  0.218   TOX high mobility group box family member 3 isoform...
TOX3                  0.216   TOX high mobility group box family member 3 isoform...
TOX4                  0.161   epidermal Langerhans cell protein LCP1 
POM121                0.044   nuclear pore membrane protein 121 
POM121C               0.042   POM121 membrane glycoprotein (rat)-like 
LOC645490             0.038   PREDICTED: similar to hCG1991922 
LOC645490             0.038   PREDICTED: similar to hCG1991922 
LOC645490             0.038   PREDICTED: similar to hCG1991922 
SETD1B                0.036   SET domain containing 1B 
LOC729595             0.036   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.035   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.035   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.035   PREDICTED: similar to high mobility group box 3 iso...
HMGB1                 0.035   high-mobility group box 1 
HMGB1L1               0.035   high-mobility group box 1-like 1 
HMGB3                 0.035   high-mobility group box 3 
SSRP1                 0.035   structure specific recognition protein 1 
PBRM1                 0.035   polybromo 1 isoform 1 
PBRM1                 0.035   polybromo 1 isoform 2 
LOC646993             0.033   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.033   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.033   PREDICTED: similar to high mobility group box 3 [Ho...
PRDM2                 0.033   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.033   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.033   retinoblastoma protein-binding zinc finger protein i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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