Guide to the Human Genome
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Name: LOC100128392 Sequence: fasta or formatted (160aa) NCBI GI: 169205432
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {160aa} PREDICTED: hypothetical protein
alt mRNA {160aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         25           2
 C cysteine            1.9          3           1
 D aspartate           3.8          6           1
 E glutamate           0.6          1           1
 F phenylalanine       1.2          2           1
 G glycine            12.5         20           1
 H histidine           3.1          5           1
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine             8.1         13           2
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline            18.8         30           3
 Q glutamine           2.5          4           1
 R arginine           15.6         25           3
 S serine              6.2         10           1
 T threonine           3.1          5           1
 V valine              3.1          5           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128392          1.000   PREDICTED: hypothetical protein 
LOC100128392          1.000   PREDICTED: hypothetical protein 
SNRPB                 0.079   small nuclear ribonucleoprotein polypeptide B/B' isof...
TAF4                  0.075   TBP-associated factor 4 
SNRPB                 0.069   small nuclear ribonucleoprotein polypeptide B/B' iso...
HCN2                  0.066   hyperpolarization activated cyclic nucleotide-gated...
FAM75C1               0.063   family with sequence similarity 75, member C1 [Homo...
FMN1                  0.063   formin 1 
CASKIN1               0.060   CASK interacting protein 1 
LOC100131102          0.060   PREDICTED: hypothetical protein 
LOC100131102          0.060   PREDICTED: hypothetical protein 
FAM75A6               0.057   hypothetical protein LOC389730 
FAM75A2               0.057   hypothetical protein LOC642265 
BCL9                  0.057   B-cell CLL/lymphoma 9 
FAM75A1               0.057   hypothetical protein LOC647060 
SDK1                  0.053   sidekick 1 
LOC100131102          0.053   PREDICTED: hypothetical protein 
COL1A2                0.053   alpha 2 type I collagen 
SYN1                  0.053   synapsin I isoform Ia 
SYN1                  0.053   synapsin I isoform Ib 
B4GALNT4              0.053   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
DBP                   0.050   D site of albumin promoter (albumin D-box) binding p...
MED25                 0.050   mediator complex subunit 25 
SAMD1                 0.050   sterile alpha motif domain containing 1 
CPSF6                 0.050   cleavage and polyadenylation specific factor 6, 68 ...
LOC100290551          0.050   PREDICTED: hypothetical protein XP_002346417 
LOC100287437          0.050   PREDICTED: hypothetical protein XP_002342117 
TOX2                  0.050   TOX high mobility group box family member 2 isoform...
TOX2                  0.050   TOX high mobility group box family member 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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