Guide to the Human Genome
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Name: FAM75C1 Sequence: fasta or formatted (1188aa) NCBI GI: 223468617
Description:

family with sequence similarity 75, member C1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         76           2
 C cysteine            2.0         24           1
 D aspartate           2.7         32           1
 E glutamate           5.8         69           2
 F phenylalanine       2.9         35           2
 G glycine             5.4         64           2
 H histidine           3.2         38           4
 I isoleucine          1.7         20           1
 K lysine              4.9         58           2
 L leucine            10.6        126           3
 M methionine          2.1         25           1
 N asparagine          3.2         38           2
 P proline            11.2        133           4
 Q glutamine           7.6         90           2
 R arginine            6.6         79           2
 S serine             12.0        143           2
 T threonine           5.3         63           2
 V valine              4.8         57           2
 W tryptophan          0.9         11           1
 Y tyrosine            0.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 75, member C1 [Homo... 
FAM75A2               0.615   hypothetical protein LOC642265 
FAM75A1               0.614   hypothetical protein LOC647060 
FAM75A3               0.613   hypothetical protein LOC727830 
FAM75A7               0.611   hypothetical protein LOC26165 
FAM75A4               0.610   PREDICTED: family with sequence similarity 75, memb...
FAM75A4               0.610   PREDICTED: family with sequence similarity 75, memb...
FAM75A5               0.610   hypothetical protein LOC727905 
FAM75A6               0.610   hypothetical protein LOC389730 
C9orf79               0.146   chromosome 9 open reading frame 79 
FAM75B                0.087   hypothetical protein LOC404770 
FLJ46321              0.054   hypothetical protein LOC389763 
FLJ44082              0.043   hypothetical protein LOC389762 
FLJ43859              0.042   hypothetical protein LOC389761 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
LOC729569             0.017   PREDICTED: hypothetical protein 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
C6orf132              0.013   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.013   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.013   PREDICTED: hypothetical protein LOC647024 
LOC100289470          0.013   PREDICTED: hypothetical protein XP_002342626 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
MUC2                  0.012   mucin 2 precursor 
RAPH1                 0.012   Ras association and pleckstrin homology domains 1 is...
OTOG                  0.012   PREDICTED: otogelin isoform 1 
OTOG                  0.012   PREDICTED: otogelin isoform 2 
OTOG                  0.012   PREDICTED: otogelin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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