Guide to the Human Genome
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Search of human proteins with 169204105

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]           343   4e-95
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]           343   4e-95
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]           343   4e-95
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    50   1e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    49   1e-06
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    47   9e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    46   1e-05
gi|223468617 family with sequence similarity 75, member C1 [Homo...    45   2e-05
gi|157168329 formin 1 [Homo sapiens]                                   45   3e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  44   5e-05
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]            44   6e-05
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]            44   6e-05
gi|223633941 hypothetical protein LOC389730 [Homo sapiens]             43   1e-04
gi|91206406 hypothetical protein LOC642265 [Homo sapiens]              43   1e-04
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]                       43   1e-04
gi|146231958 hypothetical protein LOC647060 [Homo sapiens]             43   1e-04
gi|119220552 sidekick 1 [Homo sapiens]                                 42   2e-04
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]            42   2e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     42   2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       42   2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       42   2e-04
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    42   3e-04
gi|31542493 D site of albumin promoter (albumin D-box) binding p...    41   4e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens]                 41   4e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     41   4e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    41   5e-04
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ...    41   5e-04
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ...    41   5e-04
gi|149408146 TOX high mobility group box family member 2 isoform...    41   5e-04
gi|149408144 TOX high mobility group box family member 2 isoform...    41   5e-04

>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  343 bits (880), Expect = 4e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
           MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
           LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120

Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
           SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160


>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  343 bits (880), Expect = 4e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
           MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
           LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120

Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
           SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160


>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  343 bits (880), Expect = 4e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60
           MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL
Sbjct: 1   MPKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGL 60

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
           LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG
Sbjct: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120

Query: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160
           SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW
Sbjct: 121 SRGLLETQDTSGFASPGRRPRDRRPARRCGCACARLWPVW 160


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 46/133 (34%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 6   GRDAGRG-------PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP 58
           GR AGRG       P A  G    V G   P  ++  P    RG+V AA      A+   
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAA-----AAATA 159

Query: 59  GLLGAPAPAPALTQHPSLPQGAGALPAGRRRPD---RPRPAPPWPLSP---RPSHLPSRV 112
            + GAP   P     P  P G GA P G   P    RP   PP  + P    P  +P   
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP-P 218

Query: 113 SAAPPPAGSRGLL 125
              PPP G RGLL
Sbjct: 219 GMRPPPPGMRGLL 231


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 22  QVTGPARPFHRLRPPDTHPRGSVHAAGVLDG-LASGRP-GLLGAPAPAPALTQHPSLPQG 79
           Q+   A   H L P     R +  AAG L   + SG P G  GA   APA     + P+ 
Sbjct: 32  QLAASAAHHHHLAPRTPEVRAA--AAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEP 89

Query: 80  AGALPAGRRRPDRPRPAPPWPLSPRPSHLPS-----RVSAAPPPAGSRGLLETQDTSGFA 134
               PAGR RP    P  P P SPR   +P+          PPP GS G       +   
Sbjct: 90  P---PAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146

Query: 135 SPGRRPRDRRPARRCGCA 152
           + G  P    PA+  G A
Sbjct: 147 AAGPEPAPAGPAKPAGPA 164



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 45/138 (32%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVT------------GPARPFHRLRPPDTHPRGSVHAAGV 49
           P AA      G A   G G Q              GPA P  +LRPP   P GS  +   
Sbjct: 83  PGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPP---PEGSAGSCAP 139

Query: 50  LDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLP 109
           +   A+   G    P PAPA    P+ P G  AL A  R    P P P     P P   P
Sbjct: 140 VPAAAAVAAG----PEPAPA---GPAKPAGPAALAA--RAGPGPGPGPGPGPGPGPGK-P 189

Query: 110 SRVSAAPPPAGSRGLLET 127
           +   AA    GS  LL +
Sbjct: 190 AGPGAAQTLNGSAALLNS 207



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
           P  A       PA    A      P  P    RPP  HP G   AA  +   A+ + G  
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG-HPAGPPTAAPAVPPPAAAQNGGS 308

Query: 62  GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGS 121
              APAPA       P   G  PAG      P  A   P     +  P RV  A PPA  
Sbjct: 309 AGAAPAPA-------PAAGG--PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA- 358

Query: 122 RGLLETQDTSGFAS 135
               +T   SG AS
Sbjct: 359 ----QTLAASGPAS 368



 Score = 35.8 bits (81), Expect = 0.016
 Identities = 46/168 (27%), Positives = 59/168 (35%), Gaps = 30/168 (17%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSV----HAAGVLDGLASGR 57
           P A    AG GP    G G    GP +P         +   ++    HAA     L +  
Sbjct: 163 PAALAARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNG 221

Query: 58  PGLLGAPAPAPA-----LTQHPSLPQGAGALPAGRRRPDRPRPA------PPWPLSP--- 103
           P  L  P P PA     +   P +   A   PA    P  P PA      PP P +P   
Sbjct: 222 PAAL-LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280

Query: 104 -----RPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPA 146
                 P+  P+   A PPPA ++        S  A+P   P    PA
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQ-----NGGSAGAAPAPAPAAGGPA 323



 Score = 30.4 bits (67), Expect = 0.68
 Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 20/96 (20%)

Query: 58  PGLLGAPAP-APALTQHPSLPQGAGALPAGRRRPDRPRPA----PPWPLSPRPSHLPS-- 110
           P  +GA AP APA    P+ P  A A PA    P  P PA    PP   +  P+  P+  
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAP--APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298

Query: 111 ---------RVSAAPPPAGSRGLLETQDTSGFASPG 137
                       AAP PA + G       SG   PG
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAG--GPAGVSGQPGPG 332


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 44/131 (33%), Positives = 51/131 (38%), Gaps = 21/131 (16%)

Query: 6   GRDAGRG-------PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP 58
           GR AGRG       P A  G    V G   P  ++  P    RG+V AA      A+   
Sbjct: 107 GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAA-----AAATA 159

Query: 59  GLLGAPAPAPALTQHPSLPQGAGALPAGRRRPD---RPRPAPPWPLSP---RPSHLPSRV 112
            + GAP   P     P  P G GA P G   P    RP   PP  + P    P  +P   
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP-P 218

Query: 113 SAAPPPAGSRG 123
              PPP G RG
Sbjct: 219 GMRPPPPGMRG 229


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 62  GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPA-- 119
           G P  +P  T  P  P      P  ++ P  P PAPP    P P   P R  A PP A  
Sbjct: 8   GRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAAD 67

Query: 120 --GSRGLLETQDTS 131
             G RG L ++D+S
Sbjct: 68  EGGPRGRLRSRDSS 81



 Score = 30.0 bits (66), Expect = 0.88
 Identities = 33/115 (28%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 53  LASGRPGLLGAPAPAPALTQH------PSLPQGAGALPAGRRR------PDRPRPAPPWP 100
           LA G P L+  P P PA          P+ P GA A P   R       P  P   P  P
Sbjct: 750 LALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALP 809

Query: 101 LS-------PRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARR 148
                    P  +  PS    AP PA S     +       +P  R     P RR
Sbjct: 810 ARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRR 864



 Score = 28.5 bits (62), Expect = 2.6
 Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 57  RPGLLGAPAPAPALTQHPSLPQGA--------------GALPAG-----RRRPDRPRPAP 97
           R GL   P P P +T   +  Q A              G L  G     RR P  P PA 
Sbjct: 710 RVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPGPAPAA 769

Query: 98  PWPLSPRPSHLP-SRVSAAPPPAGSRGLLETQDTSGFASPGRR-PRDRRP 145
             P  P P+  P +  S   P     G L     +G A P RR  R  RP
Sbjct: 770 ASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRP 819


>gi|223468617 family with sequence similarity 75, member C1 [Homo
           sapiens]
          Length = 1188

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 40/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 12  GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
           GP   +G   Q++GP  P     R PD   R S      AA ++  LAS  P       L
Sbjct: 118 GPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPMEDAAPIVSPLASPDPRTKHPQDL 177

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
              P P P  T   SL   A   P      +RP P PP  L P P H P  ++ +PPP
Sbjct: 178 ASTPPPGPMTTSVSSL--SASQPPEPSLLLERPSPEPP-ALFPHPPHTPDPLACSPPP 232


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 32  RLRPPDTHPRGSVHAA-GVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRP 90
           +L PP+ H    +HAA   ++G+AS +   L  P P  ++   P LP G G+L      P
Sbjct: 617 QLSPPNDHK--DIHAALQPMEGMASNQQKAL--PPPPASIPPPPPLPSGLGSLSPAPPMP 672

Query: 91  DRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
                 P  P  P P  LP   SA PPP
Sbjct: 673 PVSAGPPLPPPPPPPPPLPPPSSAGPPP 700



 Score = 37.0 bits (84), Expect = 0.007
 Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 35  PPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPR 94
           PP     GS+  A  +  +++G P L   P P P L      P  AG  P     P    
Sbjct: 656 PPLPSGLGSLSPAPPMPPVSAGPP-LPPPPPPPPPLPP----PSSAGPPPPPPPPPLPNS 710

Query: 95  PAPPWPLSPRPSHLPSRVSAAPPPAGSRGL 124
           PAPP P  P P+  P  ++  PPP    GL
Sbjct: 711 PAPPNPGGPPPAPPPPGLAPPPPPGLFFGL 740


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 35   PPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPR 94
            PP T P+     AG+  G A   P    A  P  AL + P  P   GA PA  + P    
Sbjct: 1276 PPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPA--KPPSPGA 1333

Query: 95   PAPPWPLSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDR 143
            PA   P  P  +   +  +AA PPA   G          ASPG   R +
Sbjct: 1334 PALHVPAKPPRAAAAAAAAAAAPPAPPEG----------ASPGDSARQK 1372



 Score = 30.0 bits (66), Expect = 0.88
 Identities = 46/175 (26%), Positives = 59/175 (33%), Gaps = 34/175 (19%)

Query: 2    PKAAGRDAGRGP------------AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGV 49
            PKA  R+AG  P              RR    +  GP        P +  P    H   +
Sbjct: 1152 PKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPL 1211

Query: 50   LDGLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRP---------DRPRPAPPWP 100
                   R       +P P LTQ     QG+   P  ++ P          R    PP P
Sbjct: 1212 PPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPT-PTSKKVPLPGPGSPEVKRAHGTPP-P 1269

Query: 101  LSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARRCGCACAR 155
            +SP+P   P   +A  P     GL      SG A P   P    PAR+   A A+
Sbjct: 1270 VSPKP---PPPPTAPKPVKAVAGL-----PSGSAGPSPAP---SPARQPPAALAK 1313


>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 40/143 (27%)

Query: 4   AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
           AA +   R P  + G G  +  P        PP   PRG+              P +  A
Sbjct: 73  AAAQPRRRSPGPQGGGGGDIASPL-------PPALQPRGA--------------PAVPAA 111

Query: 64  PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
           P+P P              LPA   RP  P P P  P  P    LP    AAP P  +R 
Sbjct: 112 PSPGP--------------LPA---RPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154

Query: 124 LLETQDTSGFASPGRRPRDRRPA 146
           L +   T+      +RPR RR A
Sbjct: 155 LPQGSVTA--REQEQRPRSRRRA 175



 Score = 37.4 bits (85), Expect = 0.006
 Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 26/125 (20%)

Query: 14  AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
           AAR GA ++  G  R   R+R     P G       L  + +G  G+  APA A  PA  
Sbjct: 7   AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61

Query: 72  QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
           + P+                  PQG G        P   +PR AP  P +P P  LP+R 
Sbjct: 62  ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121

Query: 113 SAAPP 117
           S+ PP
Sbjct: 122 SSPPP 126


>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 40/143 (27%)

Query: 4   AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
           AA +   R P  + G G  +  P        PP   PRG+              P +  A
Sbjct: 73  AAAQPRRRSPGPQGGGGGDIASPL-------PPALQPRGA--------------PAVPAA 111

Query: 64  PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
           P+P P              LPA   RP  P P P  P  P    LP    AAP P  +R 
Sbjct: 112 PSPGP--------------LPA---RPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154

Query: 124 LLETQDTSGFASPGRRPRDRRPA 146
           L +   T+      +RPR RR A
Sbjct: 155 LPQGSVTA--REQEQRPRSRRRA 175



 Score = 37.4 bits (85), Expect = 0.006
 Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 26/125 (20%)

Query: 14  AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
           AAR GA ++  G  R   R+R     P G       L  + +G  G+  APA A  PA  
Sbjct: 7   AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61

Query: 72  QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
           + P+                  PQG G        P   +PR AP  P +P P  LP+R 
Sbjct: 62  ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121

Query: 113 SAAPP 117
           S+ PP
Sbjct: 122 SSPPP 126


>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
          Length = 1343

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 12  GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
           GP   +G   Q++GP  P     R PD   + S      AA +L  LAS  P       L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
              P+P P  T   SL   A   P      + P P PP  L P P H P  ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220


>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
          Length = 1347

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 12  GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
           GP   +G   Q++GP  P     R PD   + S      AA +L  LAS  P       L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
              P+P P  T   SL   A   P      + P P PP  L P P H P  ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220


>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
          Length = 1426

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 19/120 (15%)

Query: 7   RDAGRGPAARRGAGMQVTGPARPFHRLRPPDTH---------PRGSVHAAGVLDGLASGR 57
           R  GR P     AG QV  P    + L+ P  H         P G++ +      LA   
Sbjct: 839 RGLGRKPLDISVAGSQVHSPG--INPLKSPTMHQVQSPMLGSPSGNLKSPQTPSQLA--- 893

Query: 58  PGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPP 117
            G+L  PA A ++   P L   A A P   + P  P P+P W  SP+P   P +    PP
Sbjct: 894 -GMLAGPAAAASIKSPPVLGSAA-ASPVHLKSPSLPAPSPGWTSSPKP---PLQSPGIPP 948


>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
          Length = 1347

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 12  GPAARRGAGMQVTGPARPFH-RLRPPDTHPRGSVH----AAGVLDGLASGRP------GL 60
           GP   +G   Q++GP  P     R PD   + S      AA +L  LAS  P       L
Sbjct: 106 GPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
              P+P P  T   SL   A   P      + P P PP  L P P H P  ++ +PPP
Sbjct: 166 ASTPSPGPMTTSVSSL--SASQPPEPSLPLEHPSPEPP-ALFPHPPHTPDPLACSPPP 220


>gi|119220552 sidekick 1 [Homo sapiens]
          Length = 2213

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 79  GAGALPAGRRRPDRPRPAPPW----PLSPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFA 134
           G GA P  R  P RPR +PP      L+PRP   PSR  AAP  +G        DT+G  
Sbjct: 14  GGGAEPPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETSGG-------DTAGAG 66

Query: 135 -SPGRRPRDRRPARR 148
              GRR     P RR
Sbjct: 67  RCGGRRAAKLGPGRR 81


>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 159

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 14  AARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPA--PALT 71
           AAR GA ++  G  R   R+R     P G       L  + +G  G+  APA A  PA  
Sbjct: 7   AARFGAAVRGGGAGR---RVRVGVGEPGGFCLPGPAL--VVAGLDGIRPAPAAAHPPAPR 61

Query: 72  QHPSL-----------------PQGAGALPAGRRRPD--RPRPAPPWPLSPRPSHLPSRV 112
           + P+                  PQG G        P   +PR AP  P +P P  LP+R 
Sbjct: 62  ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARP 121

Query: 113 SAAPPPAGSRGLLETQDTSGFASPGRRPRDRRPARR 148
           S+ PP   S  +   Q +     P + PR   P+ R
Sbjct: 122 SSPPPSPPSPPVPTAQSSLPAPWPPQGPRSPAPSLR 157


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 47/159 (29%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 1   MPKAAGRDAGRGPAARRGAGMQV--TGPARPFHRLRPPD----THPRGSVHAAGVLDGLA 54
           +P   GR    GPA  RG+   V   GPA P     PP       P+G + A G      
Sbjct: 218 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277

Query: 55  S-------GRPGLLGAPAP-----APALTQHPSLPQGAGALPAGRRRPDRPRPAP-PWPL 101
                   G PGL G   P     A  LT      +GA  LP     P  P P   P P+
Sbjct: 278 PAGPRGEVGLPGLSGPVGPPGNPGANGLTG----AKGAAGLPGVAGAPGLPGPRGIPGPV 333

Query: 102 SPRPSHLPSRVSAAPPPAGSRGLLETQDTSGFASPGRRP 140
               +     +   P PAGS+G    +   G A P   P
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPP 372



 Score = 34.7 bits (78), Expect = 0.036
 Identities = 35/133 (26%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 4   AAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGA 63
           AAG   G+G     G   ++  P R                      DG A G PG +GA
Sbjct: 647 AAGIPGGKGEKGEPGLRGEIGNPGR----------------------DG-ARGAPGAVGA 683

Query: 64  PAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSRG 123
           P PA A            A PAG R     R     P  P     P+  +  P   G RG
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGER-GEVGPAGPNGFAGPAGAAGQPGAKGERG 742

Query: 124 LLETQDTSGFASP 136
               +  +G   P
Sbjct: 743 AKGPKGENGVVGP 755



 Score = 30.8 bits (68), Expect = 0.52
 Identities = 42/141 (29%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
           P   GRD   GP          TGP  P     PP      +    G   GL  G  GL+
Sbjct: 47  PGPPGRDGEDGP----------TGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLM 96

Query: 62  GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPP----WPLSPRPSHLPSRVSAAPP 117
           G   P P     P  PQG    PAG   P  P    P     P  P            P 
Sbjct: 97  GPRGP-PGAAGAPG-PQGFQG-PAG--EPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPG 151

Query: 118 PAGSRGLLETQDTSGF-ASPG 137
             G RG++  Q   GF  +PG
Sbjct: 152 RPGERGVVGPQGARGFPGTPG 172



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 33/144 (22%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
           P A G    +G A   G       P  P  R  P      G V AAG     A+G  GL+
Sbjct: 300 PGANGLTGAKGAAGLPGVA---GAPGLPGPRGIP------GPVGAAG-----ATGARGLV 345

Query: 62  GAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPS-RVSAAPPPA- 119
           G P PA +  +  +  +   A P G          PP P        P+    +A PP  
Sbjct: 346 GEPGPAGSKGESGNKGEPGSAGPQG----------PPGPSGEEGKRGPNGEAGSAGPPGP 395

Query: 120 -------GSRGLLETQDTSGFASP 136
                  GSRGL      +G   P
Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGP 419


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 49/156 (31%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
           P A  R   +G   + G G Q  GP  P  + RPP   P+G  H +G+  G  +G P   
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGP--PLQQ-RPP---PQGQQHLSGL--GPPAGSP--- 503

Query: 62  GAPAPAPALTQHPSLPQGAGALPA-GRRRPDRPRPAPPW-PLSPRPSHLPSRVSAAPPPA 119
             P   P+ T  P  P    A P  G+ R  RP    P  P + RP   PS    A PP 
Sbjct: 504 -LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562

Query: 120 GSRGLLETQDTSGFAS---PGRRPRDRRPARRCGCA 152
            +R    +      AS   PG + R   P +  G A
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA 598



 Score = 31.6 bits (70), Expect = 0.30
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 67  APALTQHPSLPQGAGALPAGRRRPDRP-------RPAPPWPLSPRPSHLPSR----VSAA 115
           +P    H   P   GALP GR+   +P       RP PP    P+P   P R    +   
Sbjct: 427 SPGRGSHGQTPS-PGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGPQRQGPPLQQR 484

Query: 116 PPPAGSRGLLETQDTSGFASPGRRP 140
           PPP G + L      +G   P R P
Sbjct: 485 PPPQGQQHLSGLGPPAGSPLPQRLP 509



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 2   PKAAGRDAGRGPAARRGAGMQV----TGPARPFHRLRPPDT-HPRGSVHAAGVLDGLASG 56
           P+     +G GP A      ++    + P +P  +  PP     R S   AG      + 
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAA 546

Query: 57  RPGLLGAP---APAPALTQH-----PSLPQGAGALPAGRRRPDRPRPAPPWPLSP-RPSH 107
           RP    +P   A  P  T+      P+ P+ +GA P G++R   P+  PP P  P R + 
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ-KPPGPAGPTRQAS 605

Query: 108 LPSRVSAAPPP 118
               V    PP
Sbjct: 606 QAGPVPRTGPP 616



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 3   KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPR---GSVHAAGVLDGLASGRPG 59
           +AA    G+G  +R  AG    GP  P     P    P+   G   A           P 
Sbjct: 521 QAAPPTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576

Query: 60  LLGAPAPAPALTQHPSLPQG-AGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
             GAP         P  P G AG      +    PR  PP    PRPS         P P
Sbjct: 577 ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS--------GPGP 628

Query: 119 AG 120
           AG
Sbjct: 629 AG 630


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 49/156 (31%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLL 61
           P A  R   +G   + G G Q  GP  P  + RPP   P+G  H +G+  G  +G P   
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGP--PLQQ-RPP---PQGQQHLSGL--GPPAGSP--- 503

Query: 62  GAPAPAPALTQHPSLPQGAGALPA-GRRRPDRPRPAPPW-PLSPRPSHLPSRVSAAPPPA 119
             P   P+ T  P  P    A P  G+ R  RP    P  P + RP   PS    A PP 
Sbjct: 504 -LPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562

Query: 120 GSRGLLETQDTSGFAS---PGRRPRDRRPARRCGCA 152
            +R    +      AS   PG + R   P +  G A
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA 598



 Score = 31.6 bits (70), Expect = 0.30
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 67  APALTQHPSLPQGAGALPAGRRRPDRP-------RPAPPWPLSPRPSHLPSR----VSAA 115
           +P    H   P   GALP GR+   +P       RP PP    P+P   P R    +   
Sbjct: 427 SPGRGSHGQTPS-PGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGPQRQGPPLQQR 484

Query: 116 PPPAGSRGLLETQDTSGFASPGRRP 140
           PPP G + L      +G   P R P
Sbjct: 485 PPPQGQQHLSGLGPPAGSPLPQRLP 509



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 2   PKAAGRDAGRGPAARRGAGMQV----TGPARPFHRLRPPDT-HPRGSVHAAGVLDGLASG 56
           P+     +G GP A      ++    + P +P  +  PP     R S   AG      + 
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAA 546

Query: 57  RPGLLGAP---APAPALTQH-----PSLPQGAGALPAGRRRPDRPRPAPPWPLSP-RPSH 107
           RP    +P   A  P  T+      P+ P+ +GA P G++R   P+  PP P  P R + 
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ-KPPGPAGPTRQAS 605

Query: 108 LPSRVSAAPPP 118
               V    PP
Sbjct: 606 QAGPVPRTGPP 616



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 3   KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPR---GSVHAAGVLDGLASGRPG 59
           +AA    G+G  +R  AG    GP  P     P    P+   G   A           P 
Sbjct: 521 QAAPPTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576

Query: 60  LLGAPAPAPALTQHPSLPQG-AGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPP 118
             GAP         P  P G AG      +    PR  PP    PRPS         P P
Sbjct: 577 ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPS--------GPGP 628

Query: 119 AG 120
           AG
Sbjct: 629 AG 630


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           4 [Homo sapiens]
          Length = 1039

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 48/139 (34%), Positives = 55/139 (39%), Gaps = 20/139 (14%)

Query: 26  PARPFHRLRPPDTHPR----GSVHAAGVLDGLASGR---PGLLG-APAPAPALTQHPSLP 77
           PA+P   L PP T PR    G+   +  L   A      P  LG AP P PA+ Q P   
Sbjct: 467 PAQPGATLAPP-TPPRPRDGGTPRHSRALSWAARAARPLPLFLGRAPPPRPAVEQPPPKV 525

Query: 78  QGAGALPAGRRRPDRPRPAPPWP------LSPRPSHLPSRVSAAPPPAGSRGLLETQDTS 131
                 P  R  P  P P  PWP      L PRP  LP RV    PP   R     + T 
Sbjct: 526 YVTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRP--LP-RVQLRAPPRPPRP--HGRRTG 580

Query: 132 GFASPGRRPRDRRPARRCG 150
           G  +   RP  R  A + G
Sbjct: 581 GPQATQPRPPARAQATQGG 599


>gi|31542493 D site of albumin promoter (albumin D-box) binding
           protein [Homo sapiens]
          Length = 325

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 46/151 (30%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 3   KAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLG 62
           K   R A    A   G G++  GPA            P G+V    V  G   GRPG + 
Sbjct: 50  KEKERKAALPAATTPGPGLETAGPADA----------PAGAV----VGGGSPRGRPGPVP 95

Query: 63  APAPAPALTQHPSLPQGAGA---LPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPA 119
           AP     L    +LP G      L A       P P+PP P  P P   P+R  A  P  
Sbjct: 96  APGLLAPLLWERTLPFGDVEYVDLDAFLLEHGLP-PSPPPPGGPSPEPSPARTPAPSPGP 154

Query: 120 GSRGLLETQDTSGFASPGRRPRDRRPARRCG 150
           GS G    + + G A P R         R G
Sbjct: 155 GSCGSASPRSSPGHA-PARAALGTASGHRAG 184


>gi|50428940 mediator complex subunit 25 [Homo sapiens]
          Length = 747

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 39/127 (30%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 12  GPAARRGAGMQVTGPARPFH---RLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAPAP 68
           G  A  G G  +   ARP     +LRPP   P+G+V A+G     A+G+P   G   P P
Sbjct: 561 GQQAPPGLGPILEDQARPSQNLLQLRPPQPQPQGTVGASG-----ATGQPQPQGTAQPPP 615

Query: 69  ALTQHPSLPQGAGALPAGRRRPDRP-----------RPAPPWPLSPRPS----HL--PSR 111
              Q P         P    RP  P            P PP    P P     HL  P  
Sbjct: 616 GAPQGPPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGA 675

Query: 112 VSAAPPP 118
            +  PPP
Sbjct: 676 PALLPPP 682



 Score = 30.4 bits (67), Expect = 0.68
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 13  PAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGV-----LDGLASGRPGLLGAPAPA 67
           PAA  GA +    P +P   + PP     G++ AA V     ++   + + GL   P  +
Sbjct: 249 PAAPSGATLSAA-PQQPLPPV-PPQYQVPGNLSAAQVAAQNAVEAAKNQKAGL--GPRFS 304

Query: 68  PALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
           P      + P G G   +    P  P P PP    P P+  PS VS   P +G
Sbjct: 305 PITPLQQAAP-GVGPPFSQAPAPQLP-PGPPGAPKPPPASQPSLVSTVAPGSG 355


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 24/122 (19%)

Query: 7   RDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAPAP 66
           R+A R    RRGA    T PA        P   PRG+  AA      A+  P    AP P
Sbjct: 94  RNAARVQPPRRGA----TPPA--------PPRAPRGAPAAA------AAAAPPPTPAPPP 135

Query: 67  APALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPR------PSHLPSRVSAAPPPAG 120
            PA     +  +   A  A    P  P PA P P + R      P   P+   A  PPAG
Sbjct: 136 PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAG 195

Query: 121 SR 122
            R
Sbjct: 196 PR 197



 Score = 31.6 bits (70), Expect = 0.30
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 57  RPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAP 116
           +P   GA  PAP     P  P+GA A  A           PP P  P P   P+ V+AA 
Sbjct: 100 QPPRRGATPPAP-----PRAPRGAPAAAAAAA-------PPPTPAPPPP---PAPVAAAA 144

Query: 117 P---PAGSRGLLETQDTSGFASPGRRPRDRRP 145
           P   P  +        + G A PG R +   P
Sbjct: 145 PARAPRAAAAAATAPPSPGPAQPGPRAQRAAP 176



 Score = 31.6 bits (70), Expect = 0.30
 Identities = 41/143 (28%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 9   AGRGPA-ARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRP-------GL 60
           A   PA A R A    T P  P     P    PR    A       A   P       G 
Sbjct: 141 AAAAPARAPRAAAAAATAPPSP----GPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGP 196

Query: 61  LGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAG 120
             AP PA A  + P  P      P  +++P  P+P PP      P     R   A  P  
Sbjct: 197 RRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPP------PEGGAVRAGGAARPVS 250

Query: 121 SRGLLETQDTSGFASPGRRPRDR 143
            R ++     SG A  GR  R R
Sbjct: 251 LREVVRYLGGSGGAG-GRLTRGR 272


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 46/128 (35%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 2   PKAAGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHP--RGSVHAAGVL-DGLASGRP 58
           P  AG+   R P    G      GP  P   L PP   P  RG      VL  G   G+P
Sbjct: 229 PFPAGQTPPRPPLGPPGPPGP-PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP 287

Query: 59  GL----LGAPAPAPALTQHPSLP--QGAGALPAGRRRPDRPRP-APPWPLSPRPSHLPSR 111
            L     G P P P     P  P  Q     P G   P  P P  PP  L+P P HLP  
Sbjct: 288 PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAP-PPHLPGP 346

Query: 112 VSAAPPPA 119
              APPPA
Sbjct: 347 PPGAPPPA 354



 Score = 35.4 bits (80), Expect = 0.021
 Identities = 41/137 (29%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 5   AGRDAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLASGRPGLLGAP 64
           +G+ +G G A   G   +   P     R R P   P G             G  G  G P
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP---------GPAGPGGPP 227

Query: 65  APAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRP-SHLPSRVSAAPPPAGSRG 123
            P PA    P  P G    P G   P  P P PP  + P P +  P+R    PPP    G
Sbjct: 228 PPFPAGQTPPRPPLG----PPGP--PGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281

Query: 124 LLETQDTSGFASPGRRP 140
               Q   G   PG  P
Sbjct: 282 QPFGQPPLGPLPPGPPP 298



 Score = 34.3 bits (77), Expect = 0.047
 Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 58  PGLLGAP---APAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSA 114
           PG LG P   AP P L   P  P GA         P  P   P +   P  S +P+  S 
Sbjct: 328 PGPLGPPLTLAPPPHL---PGPPPGAP--------PPAPHVNPAFFPPPTNSGMPTSDSR 376

Query: 115 APPPAGSRGLLETQDTSGFASPGR 138
            PPP    G     D   +  PGR
Sbjct: 377 GPPPTDPYGRPPPYDRGDYGPPGR 400


>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
           sapiens]
          Length = 144

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 14  AARRGAGMQVTGPARP----FHRLRPPDTHPRGSV-HAAGVLDGLASGRPGLLGAPAPAP 68
           A+  G G ++ GP RP        RPP    RGS  HAAG     +   P  L  PAP P
Sbjct: 5   ASAAGLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGA----SFPAPAQLLLPAPPP 60

Query: 69  ALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSR 122
                 SL    G  P       R  PAPP  +  R         A PPPA SR
Sbjct: 61  G--SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGG------DAHPPPAFSR 106



 Score = 28.9 bits (63), Expect = 2.0
 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 18/81 (22%)

Query: 79  GAGALPAGRRRPDRP-----RP------APPWPLSPRPSHLPSRVSAAPPPAGSRGLLET 127
           G GA   G RRP  P     RP        PW  +      P+++    PP GSR     
Sbjct: 9   GLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSR----- 63

Query: 128 QDTSGFASPGRRPRDRRPARR 148
              S  ++PGR P     ARR
Sbjct: 64  --VSLGSAPGRPPPPALAARR 82


>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
           sapiens]
          Length = 144

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 14  AARRGAGMQVTGPARP----FHRLRPPDTHPRGSV-HAAGVLDGLASGRPGLLGAPAPAP 68
           A+  G G ++ GP RP        RPP    RGS  HAAG     +   P  L  PAP P
Sbjct: 5   ASAAGLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGA----SFPAPAQLLLPAPPP 60

Query: 69  ALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPPPAGSR 122
                 SL    G  P       R  PAPP  +  R         A PPPA SR
Sbjct: 61  G--SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGG------DAHPPPAFSR 106



 Score = 28.9 bits (63), Expect = 2.0
 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 18/81 (22%)

Query: 79  GAGALPAGRRRPDRP-----RP------APPWPLSPRPSHLPSRVSAAPPPAGSRGLLET 127
           G GA   G RRP  P     RP        PW  +      P+++    PP GSR     
Sbjct: 9   GLGAEILGPRRPSGPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSR----- 63

Query: 128 QDTSGFASPGRRPRDRRPARR 148
              S  ++PGR P     ARR
Sbjct: 64  --VSLGSAPGRPPPPALAARR 82


>gi|149408146 TOX high mobility group box family member 2 isoform b
           [Homo sapiens]
          Length = 488

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 52  GLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRR----PDRPRPAPPWPLSPRPSH 107
           G  S  PGL  +P P P+    P+L Q     P  +      P    PAP  P+ P P  
Sbjct: 360 GSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPVLPTPMA 419

Query: 108 LPSRVSAAPPPAGSRG---LLETQDTSGFASPG-RRPR------DRRPARRCGCACARLW 157
           L  +++ +P P G +    + E   +SG  SPG   P          P+  CG +   L 
Sbjct: 420 LQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGPSNPTSSGDWDSSYPSGECGISTCSLL 479

Query: 158 P 158
           P
Sbjct: 480 P 480


>gi|149408144 TOX high mobility group box family member 2 isoform a
           [Homo sapiens]
          Length = 506

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 52  GLASGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRR----PDRPRPAPPWPLSPRPSH 107
           G  S  PGL  +P P P+    P+L Q     P  +      P    PAP  P+ P P  
Sbjct: 378 GSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPVLPTPMA 437

Query: 108 LPSRVSAAPPPAGSRG---LLETQDTSGFASPG-RRPR------DRRPARRCGCACARLW 157
           L  +++ +P P G +    + E   +SG  SPG   P          P+  CG +   L 
Sbjct: 438 LQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGPSNPTSSGDWDSSYPSGECGISTCSLL 497

Query: 158 P 158
           P
Sbjct: 498 P 498


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,868,326
Number of Sequences: 37866
Number of extensions: 770001
Number of successful extensions: 10224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 1373
Number of HSP's that attempted gapping in prelim test: 5973
Number of HSP's gapped (non-prelim): 4327
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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