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Search of human proteins with 169201944
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 894 0.0
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 894 0.0
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 894 0.0
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 61 2e-09
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-07
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-07
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 52 1e-06
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 52 1e-06
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 52 1e-06
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 49 9e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 2e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 48 2e-05
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 48 2e-05
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 48 2e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 47 3e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 47 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 6e-05
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 46 6e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 1e-04
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 1e-04
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 45 2e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 2e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 44 2e-04
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 44 3e-04
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 894 bits (2310), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
Query: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
Query: 421 WMRKSLLSPAPRPRAF 436
WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 894 bits (2310), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
Query: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
Query: 421 WMRKSLLSPAPRPRAF 436
WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 894 bits (2310), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1 MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
Query: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61 PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
Query: 421 WMRKSLLSPAPRPRAF 436
WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 60.8 bits (146), Expect = 2e-09
Identities = 79/319 (24%), Positives = 106/319 (33%), Gaps = 65/319 (20%)
Query: 74 AHRRAPSAEALPMSHRPAPRQK------PFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAH 127
+H R+P S PAP +K P P + PSV T ++ P P
Sbjct: 196 SHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPE 255
Query: 128 AHAPT---HSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGAL 184
P+ +S KT S S RSR R +H
Sbjct: 256 PKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSH-------------------- 295
Query: 185 GVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSR 244
+R RRR R RSR PRR P RRR + R P R
Sbjct: 296 ------TRPRRRHR---SRSRSYSPRRRP----------------SPRRRPSPRRRTPPR 330
Query: 245 SLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAW 304
+ PPPR RR RR R+ + + G ++ R P +R
Sbjct: 331 RMPPPPRHRRSRSPVRRRRRSSASLS------GSSSSSSSSRSRSPPKKPPKRTSSPPRK 384
Query: 305 GVSLAPPPLQAGEPSRGH-PHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPG-TAAPSPR 362
L+P A P R H P P T P T+ S + V PG T+ +
Sbjct: 385 TRRLSP---SASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTK 441
Query: 363 AEAVSAARSDAPRPKGREI 381
+ S +P PK R++
Sbjct: 442 HKGTEKRESPSPAPKPRKV 460
Score = 56.2 bits (134), Expect = 6e-08
Identities = 103/435 (23%), Positives = 142/435 (32%), Gaps = 73/435 (16%)
Query: 46 GTRVEVEGARLAEVPPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSP 105
G+ +R P P R +PSA HRP+P P P T SP
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATP-PPKTRHSP 415
Query: 106 SVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPG------RSRLAR 159
TP ++ R + +P + + K + R SPSP +
Sbjct: 416 -----TPQ----QSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESE 466
Query: 160 RPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGR-----------------RRRRLLAP 202
+ A D + + D GS RRRR
Sbjct: 467 EDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPS 526
Query: 203 RSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARP---SRSLAPPPRRR------ 253
RS PR+ GR +RRR + + A P R+ PPPRRR
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPP 586
Query: 254 RRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDC--AAWGVSLAPP 311
RR + RR + P + A P RR VS +PP
Sbjct: 587 RRRSPSPRRYSPPIQRRYSPSPPPKRRTA------SPPPPPKRRASPSPPPKRRVSHSPP 640
Query: 312 PLQAGEPSRGHPHPRLTDV--PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAA 369
P Q P P L+ G+ SR R +P QP K + +P PRA S++
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSP----QPNKRHSPSPRPRAPQTSSS 696
Query: 370 -------------RSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPRE 416
R +P P R IR P+ + +P+P + R +S R
Sbjct: 697 PPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSS----RS 752
Query: 417 VLGSWMRKSLLSPAP 431
V GS + PAP
Sbjct: 753 VSGSPEPAAKKPPAP 767
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 55.5 bits (132), Expect = 1e-07
Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)
Query: 52 EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
+G + A+ PP P+ L+P R AP+A P+S R+ P S
Sbjct: 29 DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84
Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
SP SV+ +PAG R P PRA H+P ++ +I G + R R R
Sbjct: 85 SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGS 144
Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
RR Q V L G+ GA G +G R + P +P A R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199
Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
GG GGG R + RAR S P PRR R G R R +A + +
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254
Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
P R + G GA ++A R GC G AP LQ
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314
Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
G + HP + P + R A L L QP P AP P +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 55.1 bits (131), Expect = 1e-07
Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)
Query: 52 EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
+G + A+ PP P+ L+P R AP+A P+S R+ P S
Sbjct: 29 DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84
Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
SP SV+ +PAG R P PRA H+P ++ +I G + R R R
Sbjct: 85 SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGS 144
Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
RR Q V L G+ GA G +G R + P +P A R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199
Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
GG GGG R + RAR S P PRR R G R R +A + +
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254
Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
P R + G GA ++A R GC G AP LQ
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314
Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
G + HP + P + R A L L QP P AP P +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 55.1 bits (131), Expect = 1e-07
Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)
Query: 52 EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
+G + A+ PP P+ L+P R AP+A P+S R+ P S
Sbjct: 29 DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84
Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
SP SV+ +PAG R P PRA H+P ++ +I G + R R R
Sbjct: 85 SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGS 144
Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
RR Q V L G+ GA G +G R + P +P A R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199
Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
GG GGG R + RAR S P PRR R G R R +A + +
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254
Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
P R + G GA ++A R GC G AP LQ
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314
Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
G + HP + P + R A L L QP P AP P +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 52.0 bits (123), Expect = 1e-06
Identities = 60/193 (31%), Positives = 68/193 (35%), Gaps = 51/193 (26%)
Query: 209 PRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVA 268
PR AP GGRAAGG R RRR R R SRS A PRRR R RR R
Sbjct: 366 PRSAPSSQGRGGRAAGGAGRRRRRRR----RRRRSRSSASAPRRRGR-----RRPRPA-- 414
Query: 269 GNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT 328
P R + R S RG AP P RGH
Sbjct: 415 -------PPRGSSRSLSRARSSSDSGSGRG----------APGPGPEPGSERGHG----- 452
Query: 329 DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRA-------EAVSAARSDAPRPKGREI 381
G R + P +P + +PSP A E S++RS P P+
Sbjct: 453 -------GHGKRAKERP----PRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSS 501
Query: 382 RGEPGDLRPRGAE 394
P R R AE
Sbjct: 502 SRSPSKSRSRSAE 514
Score = 46.2 bits (108), Expect = 6e-05
Identities = 72/305 (23%), Positives = 99/305 (32%), Gaps = 59/305 (19%)
Query: 89 RPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTSRSRC 148
RP P P+S SP V R KA A APT +R +
Sbjct: 327 RPGSAHSPPDKPSSPSPRV---------------RDKAAAAAPT---------PPARGKE 362
Query: 149 SPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDI 208
SPSP + ++ G G R RRRRR RS
Sbjct: 363 SPSPRSAPSSQ--------------------GRGGRAAGGAGRRRRRRRRRRRSRSSASA 402
Query: 209 PRRAPHRLLAGGRAAGGGRRVGSRRRATVT-RARPSRSLAPPPRRRRRAGQTHRRARTEV 267
PRR R G R + R ++ + R + P P R G +RA+
Sbjct: 403 PRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERP 462
Query: 268 AGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRL 327
GA G G + +SS+ G +W S +P ++ + P
Sbjct: 463 PRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSR 522
Query: 328 TDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA-ARSDAPRPKGREIRGEPG 386
+ P +SR G+G A AEA A RS + P + R P
Sbjct: 523 SPSPKKPLSRDKDGEG-------------RARHSEAEATRARRRSRSYSPIRKRRRDSPS 569
Query: 387 DLRPR 391
+ PR
Sbjct: 570 FMEPR 574
Score = 32.7 bits (73), Expect = 0.66
Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 30/146 (20%)
Query: 18 SPRSQEALRVGGEVGSRADLWGGG------RGYCGTRVEVEGARLAEVPPWV-PSLVPPG 70
S RS R + GS G G RG+ G G R E PP P+ P
Sbjct: 419 SSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGG-----HGKRAKERPPRARPASTSPS 473
Query: 71 SGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHA 130
G AH R E S P P + + +S+SPS ++ S A+ H+
Sbjct: 474 PG-AHGRRGGPEGKSSSRSPGPHPRSW--SSSRSPS-----------KSRSRSAEKRPHS 519
Query: 131 PTHSLLSIPGAKTSRSRCSPSPGRSR 156
P+ S P K SR GR+R
Sbjct: 520 PSRS----PSPKKPLSRDKDGEGRAR 541
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 51.6 bits (122), Expect = 1e-06
Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)
Query: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
PS +K P IP G + + +R ++RL RR +I
Sbjct: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80
Query: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
GG+ +A GA G++ RRRRL APR R + PRR P
Sbjct: 81 GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134
Query: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
RL A + G R S R R + AR R L P P RAG T R R
Sbjct: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192
Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
+ + PG + G + + A R CA G P P+ G P PR
Sbjct: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246
Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
DVP R G + +PG+ A S RA S + A RP E PG
Sbjct: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299
Query: 387 DLRP 390
RP
Sbjct: 300 AARP 303
Score = 30.4 bits (67), Expect = 3.3
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
L P + IP R P R+ G G ++ +R A ++ R RRRR G
Sbjct: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69
Query: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
R G G G GAA GAG + RR LA P PLQ
Sbjct: 70 IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114
Query: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
G R H LT P + R G P+ ++P +A R SA R
Sbjct: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172
Query: 372 DAPRPKGREIRGEPGDLRP 390
P P R LRP
Sbjct: 173 LPPAPAAGLWRAGCTRLRP 191
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 51.6 bits (122), Expect = 1e-06
Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)
Query: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
PS +K P IP G + + +R ++RL RR +I
Sbjct: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80
Query: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
GG+ +A GA G++ RRRRL APR R + PRR P
Sbjct: 81 GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134
Query: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
RL A + G R S R R + AR R L P P RAG T R R
Sbjct: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192
Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
+ + PG + G + + A R CA G P P+ G P PR
Sbjct: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246
Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
DVP R G + +PG+ A S RA S + A RP E PG
Sbjct: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299
Query: 387 DLRP 390
RP
Sbjct: 300 AARP 303
Score = 30.4 bits (67), Expect = 3.3
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
L P + IP R P R+ G G ++ +R A ++ R RRRR G
Sbjct: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69
Query: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
R G G G GAA GAG + RR LA P PLQ
Sbjct: 70 IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114
Query: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
G R H LT P + R G P+ ++P +A R SA R
Sbjct: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172
Query: 372 DAPRPKGREIRGEPGDLRP 390
P P R LRP
Sbjct: 173 LPPAPAAGLWRAGCTRLRP 191
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 51.2 bits (121), Expect = 2e-06
Identities = 94/349 (26%), Positives = 118/349 (33%), Gaps = 67/349 (19%)
Query: 64 PSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPR 123
PS PPG G+ R P + P R F P SV S P+ RAP P
Sbjct: 176 PSAHPPGRGSG--RVPRGQ--PEQQAWEQRSSHFLAPEG---SVASLLPSAKPARAPRPA 228
Query: 124 AKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLI--QAVDFLGGIH----- 176
+A A S R R + PLA L+ AV +
Sbjct: 229 PRAREEAAAGS--------RGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP 280
Query: 177 -----DFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAAGG 225
++ L GSR RR R A RS P L GG G
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340
Query: 226 GRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG---R 278
RR G R R + +PP P RAG+ + G G PG R
Sbjct: 341 RRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVSPR 396
Query: 279 EGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQMS 336
EGA GEG R + R C + +P Q G P R PRL+
Sbjct: 397 EGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS-------- 443
Query: 337 RGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
APS + V G A +P E +S+ R+ AP +GR+ P
Sbjct: 444 -------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 484
Score = 40.4 bits (93), Expect = 0.003
Identities = 112/429 (26%), Positives = 139/429 (32%), Gaps = 120/429 (27%)
Query: 84 LPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAK- 142
+PM+ R +P F V TSQS S PSPR + P + + P A+
Sbjct: 10 VPMTRRASPVFTGFCVNTSQSESF-----------DPSPRGR---DGPWRHVETFPRARG 55
Query: 143 ----TSRSR-CSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHD--------- 188
+ R+R P P R L +A G H F +L H
Sbjct: 56 VEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFH-FQPFLSLSPHQERGRSKPSP 114
Query: 189 ------RGSRGR-----------------RRRRLLAPRSRCD------IPRRAPH----- 214
RG G+ RR L +PR PR PH
Sbjct: 115 PVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFR 174
Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAP--------PPRRRRRAGQTHRRARTE 266
R A G GR + R S LAP P + RA + RAR E
Sbjct: 175 RPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREE 234
Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLA--PPPLQAGEPSRGHPH 324
A G G E A G+ + P A + SLA PPPLQ
Sbjct: 235 AAAGSR-GRGGAERPAARGSAQQP-PLARLLLASAVSLAASLARSPPPLQ---------- 282
Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDA----PRPKGRE 380
PRL +++ + G APSL +P PR A RS A P P+
Sbjct: 283 PRLGSASPPRLAAPLAGSRAPSL----------SPFPRRCRRRAERSPAGHGLPLPRSLS 332
Query: 381 IRGE-PGDLRPRGAE---------GCTAPAPTGLFREDASPSCP-----REVLGSWMRKS 425
GE G R RG E GC +P A P+ P R W RK
Sbjct: 333 RGGEVVGARRRRGGEERRVRGRRQGCALGSPP----IPAGPAAPGRAGERRAARQW-RKR 387
Query: 426 LLSPAPRPR 434
P PR
Sbjct: 388 GGGPGVSPR 396
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 51.2 bits (121), Expect = 2e-06
Identities = 94/349 (26%), Positives = 118/349 (33%), Gaps = 67/349 (19%)
Query: 64 PSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPR 123
PS PPG G+ R P + P R F P SV S P+ RAP P
Sbjct: 176 PSAHPPGRGSG--RVPRGQ--PEQQAWEQRSSHFLAPEG---SVASLLPSAKPARAPRPA 228
Query: 124 AKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLI--QAVDFLGGIH----- 176
+A A S R R + PLA L+ AV +
Sbjct: 229 PRAREEAAAGS--------RGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP 280
Query: 177 -----DFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAAGG 225
++ L GSR RR R A RS P L GG G
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340
Query: 226 GRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG---R 278
RR G R R + +PP P RAG+ + G G PG R
Sbjct: 341 RRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVSPR 396
Query: 279 EGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQMS 336
EGA GEG R + R C + +P Q G P R PRL+
Sbjct: 397 EGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS-------- 443
Query: 337 RGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
APS + V G A +P E +S+ R+ AP +GR+ P
Sbjct: 444 -------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 484
Score = 40.4 bits (93), Expect = 0.003
Identities = 112/429 (26%), Positives = 139/429 (32%), Gaps = 120/429 (27%)
Query: 84 LPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAK- 142
+PM+ R +P F V TSQS S PSPR + P + + P A+
Sbjct: 10 VPMTRRASPVFTGFCVNTSQSESF-----------DPSPRGR---DGPWRHVETFPRARG 55
Query: 143 ----TSRSR-CSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHD--------- 188
+ R+R P P R L +A G H F +L H
Sbjct: 56 VEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFH-FQPFLSLSPHQERGRSKPSP 114
Query: 189 ------RGSRGR-----------------RRRRLLAPRSRCD------IPRRAPH----- 214
RG G+ RR L +PR PR PH
Sbjct: 115 PVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFR 174
Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAP--------PPRRRRRAGQTHRRARTE 266
R A G GR + R S LAP P + RA + RAR E
Sbjct: 175 RPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREE 234
Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLA--PPPLQAGEPSRGHPH 324
A G G E A G+ + P A + SLA PPPLQ
Sbjct: 235 AAAGSR-GRGGAERPAARGSAQQP-PLARLLLASAVSLAASLARSPPPLQ---------- 282
Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDA----PRPKGRE 380
PRL +++ + G APSL +P PR A RS A P P+
Sbjct: 283 PRLGSASPPRLAAPLAGSRAPSL----------SPFPRRCRRRAERSPAGHGLPLPRSLS 332
Query: 381 IRGE-PGDLRPRGAE---------GCTAPAPTGLFREDASPSCP-----REVLGSWMRKS 425
GE G R RG E GC +P A P+ P R W RK
Sbjct: 333 RGGEVVGARRRRGGEERRVRGRRQGCALGSPP----IPAGPAAPGRAGERRAARQW-RKR 387
Query: 426 LLSPAPRPR 434
P PR
Sbjct: 388 GGGPGVSPR 396
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 48.9 bits (115), Expect = 9e-06
Identities = 94/351 (26%), Positives = 119/351 (33%), Gaps = 64/351 (18%)
Query: 55 RLAEVPPWVPSLVP-PGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPA 113
RL VP P P GA R P PR++ P + P+ +
Sbjct: 84 RLGRVPLTFREASPGPAPGAPRARGSCGR------EPGPRRRRAPSSAGKRPAAAA---- 133
Query: 114 GVFVRAPSPRAKAHAHAPTHSLLSIP----GAKTSRSRCSPSPGRSRLARRPLAHLIQAV 169
RA PR ++ A S+ S G R C R RRPL
Sbjct: 134 ----RAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHC-RCHCRRRPLPKPPPLQ 188
Query: 170 DFLGGIHDFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAA 223
LG ++ L GSR RR R A RS P L GG
Sbjct: 189 PRLGS----ASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVV 244
Query: 224 GGGRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG-- 277
G RR G R R + +PP P RAG+ + G G PG
Sbjct: 245 GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVS 300
Query: 278 -REGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQ 334
REGA GEG R + R C + +P Q G P R PRL+
Sbjct: 301 PREGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS------ 349
Query: 335 MSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
APS + V G A +P E +S+ R+ AP +GR+ P
Sbjct: 350 ---------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 390
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/137 (33%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
G PG G +G R P + G D A P +AGE RG P P+ PG
Sbjct: 228 GEPGEPGVSGPMGPRGPPGPPGKPGDD------GEAGKPGKAGE--RGPPGPQGARGFPG 279
Query: 333 TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG-REIRGEPGDLRP 390
T GV+G +G P L K AP + E+ S + +P P G R + GE G P
Sbjct: 280 TPGLPGVKGHRGYPG--LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 337
Query: 391 RGAEGCTA----PAPTG 403
GA G P P G
Sbjct: 338 AGAAGARGNDGQPGPAG 354
Score = 42.4 bits (98), Expect = 8e-04
Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPG 332
G G G AG P +RG GV PP + G P +RG P G
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-----GQDG 522
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
+G G+ PS G A P A + P R + G PGD P+G
Sbjct: 523 LAGPKGAPGERGPS--------GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQG 573
Query: 393 AEGCTAPAPTGLFREDASPSCP 414
G P+G ED P P
Sbjct: 574 KVG-----PSGAPGEDGRPGPP 590
Score = 42.0 bits (97), Expect = 0.001
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G G G GE P +A RG D A PP G P+ G P G
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQP---GPAGPPGPVG-PAGGPGFPGAPGAKGE 376
Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-----PRAEAVSAARSDAPRPKGREIRGEPGD 387
G RG +GA +P PG+ P+ P + + A+ A P G PG
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 436
Query: 388 LRPRGAEGCTAP 399
P G +G T P
Sbjct: 437 RGPPGPQGATGP 448
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL--QAGEPSRGHPHPRLTDVP 331
G PG++GA G R P + PP L AGEP R P P
Sbjct: 1002 GEPGKQGAPGASGDRGPPG--------------PVGPPGLTGPAGEPGR-EGSPGADGPP 1046
Query: 332 GTQMSRGVRGQ-------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKG-REIR 382
G + GV+G GAP P PG A P+ + A + P P G R
Sbjct: 1047 GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR 1106
Query: 383 GEPGDLRPRGAEG 395
G G PRG +G
Sbjct: 1107 GIQGPQGPRGDKG 1119
Score = 40.0 bits (92), Expect = 0.004
Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 40/157 (25%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G G GA G+ + + A ++G D A G P +G P P T V G
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKG-DAGAPG-----PQGPSGAPGPQGP----TGVTGP 883
Query: 334 QMSRGVRGQ-------------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
+ +RG +G G P P PG PS + + AR D+ P GR
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK-DGPKGARGDSG-PPGRA 941
Query: 381 -------------IRGEPGDLRPRGAEGCTAPAPTGL 404
+GEPGD P GAEG P P GL
Sbjct: 942 GEPGLQGPAGPPGEKGEPGDDGPSGAEG--PPGPQGL 976
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPG 332
G PG +G +G P+ A +RG + P Q GE RG P P + PG
Sbjct: 957 GEPGDDGPSGAEGPPGPQGLAGQRG---------IVGLPGQRGE--RGFPGLPGPSGEPG 1005
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
Q + G G P + P PG P+ P E A R ++G+ G+
Sbjct: 1006 KQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 1063
Query: 391 RGAEGCTAPAPTG 403
GA G AP P G
Sbjct: 1064 VGAPG--APGPPG 1074
Score = 37.4 bits (85), Expect = 0.027
Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 24/142 (16%)
Query: 274 GHPGREGAAGEGA--GRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
G PGREG+ G GRD + + A G AP P G P P
Sbjct: 1032 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP--PGSPGPAGP-------T 1082
Query: 332 GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE------- 384
G Q RG G P + P P A + + +A P R ++G
Sbjct: 1083 GKQGDRGEAGAQGP---MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139
Query: 385 --PGDLRPRGAEGCTAPA-PTG 403
PG P G +G + PA P+G
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSG 1161
Score = 36.2 bits (82), Expect = 0.060
Identities = 41/140 (29%), Positives = 49/140 (35%), Gaps = 30/140 (21%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PG++G G P A RG A P G P G PG
Sbjct: 630 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-------GKPGD 682
Query: 334 QMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG----REIRGEPGDL 388
Q GV G+ GAP L+ PR E +P +G R + G PG
Sbjct: 683 Q---GVPGEAGAPGLV-----------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 728
Query: 389 RPRGAEGCTAP----APTGL 404
P+GA G P P GL
Sbjct: 729 GPKGASGPAGPPGAQGPPGL 748
Score = 35.4 bits (80), Expect = 0.10
Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 14/138 (10%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVS--LAPPPLQAGEPSRGHPHPR 326
G PG GAAG + +G + A G++ + PP +G P
Sbjct: 750 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP- 808
Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
PG S G RG P P A P A+ A+ + + G PG
Sbjct: 809 ----PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864
Query: 387 DLRPRGAEGCTAPAPTGL 404
P GA G PTG+
Sbjct: 865 PQGPSGAPG--PQGPTGV 880
Score = 34.3 bits (77), Expect = 0.23
Identities = 40/151 (26%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 247 APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGV 306
A PP AG+ + +G G PG G GEG + G
Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698
Query: 307 SLAPPPLQAGEP-SRGHPHPR-LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
P + G P ++G PR L PGT +G G P PG P P +
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGP--------PGAQGP-PGLQ 749
Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
+ R A + RG+ G+ P GA G
Sbjct: 750 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 780
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.1 bits (113), Expect = 2e-05
Identities = 46/137 (33%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
G PG G +G R P + G D A P +AGE RG P P+ PG
Sbjct: 159 GEPGEPGVSGPMGPRGPPGPPGKPGDD------GEAGKPGKAGE--RGPPGPQGARGFPG 210
Query: 333 TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG-REIRGEPGDLRP 390
T GV+G +G P L K AP + E+ S + +P P G R + GE G P
Sbjct: 211 TPGLPGVKGHRGYPG--LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 268
Query: 391 RGAEGCTA----PAPTG 403
GA G P P G
Sbjct: 269 AGAAGARGNDGQPGPAG 285
Score = 42.4 bits (98), Expect = 8e-04
Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPG 332
G G G AG P +RG GV PP + G P +RG P G
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-----GQDG 453
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
+G G+ PS G A P A + P R + G PGD P+G
Sbjct: 454 LAGPKGAPGERGPS--------GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQG 504
Query: 393 AEGCTAPAPTGLFREDASPSCP 414
G P+G ED P P
Sbjct: 505 KVG-----PSGAPGEDGRPGPP 521
Score = 42.0 bits (97), Expect = 0.001
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G G G GE P +A RG D A PP G P+ G P G
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQP---GPAGPPGPVG-PAGGPGFPGAPGAKGE 307
Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-----PRAEAVSAARSDAPRPKGREIRGEPGD 387
G RG +GA +P PG+ P+ P + + A+ A P G PG
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 367
Query: 388 LRPRGAEGCTAP 399
P G +G T P
Sbjct: 368 RGPPGPQGATGP 379
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL--QAGEPSRGHPHPRLTDVP 331
G PG++GA G R P + PP L AGEP R P P
Sbjct: 933 GEPGKQGAPGASGDRGPPG--------------PVGPPGLTGPAGEPGR-EGSPGADGPP 977
Query: 332 GTQMSRGVRGQ-------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKG-REIR 382
G + GV+G GAP P PG A P+ + A + P P G R
Sbjct: 978 GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR 1037
Query: 383 GEPGDLRPRGAEG 395
G G PRG +G
Sbjct: 1038 GIQGPQGPRGDKG 1050
Score = 40.0 bits (92), Expect = 0.004
Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 40/157 (25%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G G GA G+ + + A ++G D A G P +G P P T V G
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKG-DAGAPG-----PQGPSGAPGPQGP----TGVTGP 814
Query: 334 QMSRGVRGQ-------------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
+ +RG +G G P P PG PS + + AR D+ P GR
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK-DGPKGARGDSG-PPGRA 872
Query: 381 -------------IRGEPGDLRPRGAEGCTAPAPTGL 404
+GEPGD P GAEG P P GL
Sbjct: 873 GEPGLQGPAGPPGEKGEPGDDGPSGAEG--PPGPQGL 907
Score = 39.7 bits (91), Expect = 0.005
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPG 332
G PG +G +G P+ A +RG + P Q GE RG P P + PG
Sbjct: 888 GEPGDDGPSGAEGPPGPQGLAGQRG---------IVGLPGQRGE--RGFPGLPGPSGEPG 936
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
Q + G G P + P PG P+ P E A R ++G+ G+
Sbjct: 937 KQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 994
Query: 391 RGAEGCTAPAPTG 403
GA G AP P G
Sbjct: 995 VGAPG--APGPPG 1005
Score = 37.4 bits (85), Expect = 0.027
Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 24/142 (16%)
Query: 274 GHPGREGAAGEGA--GRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
G PGREG+ G GRD + + A G AP P G P P
Sbjct: 963 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP--PGSPGPAGP-------T 1013
Query: 332 GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE------- 384
G Q RG G P + P P A + + +A P R ++G
Sbjct: 1014 GKQGDRGEAGAQGP---MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070
Query: 385 --PGDLRPRGAEGCTAPA-PTG 403
PG P G +G + PA P+G
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSG 1092
Score = 36.2 bits (82), Expect = 0.060
Identities = 41/140 (29%), Positives = 49/140 (35%), Gaps = 30/140 (21%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PG++G G P A RG A P G P G PG
Sbjct: 561 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-------GKPGD 613
Query: 334 QMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG----REIRGEPGDL 388
Q GV G+ GAP L+ PR E +P +G R + G PG
Sbjct: 614 Q---GVPGEAGAPGLV-----------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 659
Query: 389 RPRGAEGCTAP----APTGL 404
P+GA G P P GL
Sbjct: 660 GPKGASGPAGPPGAQGPPGL 679
Score = 35.4 bits (80), Expect = 0.10
Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 14/138 (10%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVS--LAPPPLQAGEPSRGHPHPR 326
G PG GAAG + +G + A G++ + PP +G P
Sbjct: 681 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP- 739
Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
PG S G RG P P A P A+ A+ + + G PG
Sbjct: 740 ----PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795
Query: 387 DLRPRGAEGCTAPAPTGL 404
P GA G PTG+
Sbjct: 796 PQGPSGAPG--PQGPTGV 811
Score = 34.3 bits (77), Expect = 0.23
Identities = 40/151 (26%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 247 APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGV 306
A PP AG+ + +G G PG G GEG + G
Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 629
Query: 307 SLAPPPLQAGEP-SRGHPHPR-LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
P + G P ++G PR L PGT +G G P PG P P +
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGP--------PGAQGP-PGLQ 680
Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
+ R A + RG+ G+ P GA G
Sbjct: 681 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 711
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.8 bits (112), Expect = 2e-05
Identities = 114/415 (27%), Positives = 138/415 (33%), Gaps = 108/415 (26%)
Query: 15 LSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGS-GA 73
L P + A + G G R D G +G G+ + +G R P P P G+ G
Sbjct: 726 LQGMPGERGAAGLPGPKGDRGD--AGPKGADGSPGK-DGVRGLTGPIGPPG--PAGAPGD 780
Query: 74 AHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTH 133
PS A P R AP + P P PAG F P + A
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPG---------PAG-FAGPPGADGQPGAKGE-- 828
Query: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRG 193
PG ++ P PG + A P G I + A GA G RGS G
Sbjct: 829 -----PGDAGAKGDAGP-PGPAGPAGPP-----------GPIGNVGAPGAKGA--RGSAG 869
Query: 194 RRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--PR 251
P P A GR G PS + PP P
Sbjct: 870 --------PPGATGFPG-------AAGRVGPPG---------------PSGNAGPPGPPG 899
Query: 252 RRRRAGQTHRRARTEVAGNV-------------HVGHPGREGAAGEGAGRDPESSADRRG 298
+ G R T AG G PG +G AG P+ A +RG
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRG 959
Query: 299 CDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTA 357
+ P Q GE RG P P + PG Q G G+ P + P PG A
Sbjct: 960 ---------VVGLPGQRGE--RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP--PGLA 1006
Query: 358 AP--------SPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCT-APAPTG 403
P +P AE S R +P KG RGE G P GA G AP P G
Sbjct: 1007 GPPGESGREGAPGAEG-SPGRDGSPGAKGD--RGETGPAGPPGAPGAPGAPGPVG 1058
Score = 44.3 bits (103), Expect = 2e-04
Identities = 47/150 (31%), Positives = 57/150 (38%), Gaps = 19/150 (12%)
Query: 273 VGHPGREGAAGEG--AGR----DPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHP--H 324
+G PG +GAAGE AG P + G D A P AGE P
Sbjct: 580 MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639
Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE 384
P +PG G G+ Q V AP P S AR + P R ++G
Sbjct: 640 PGFQGLPGPAGPPGEAGKPGE----QGVPGDLGAPGP-----SGARGERGFPGERGVQGP 690
Query: 385 PGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
PG PRGA G AP G + +P P
Sbjct: 691 PGPAGPRGANG--APGNDGAKGDAGAPGAP 718
Score = 43.1 bits (100), Expect = 5e-04
Identities = 57/182 (31%), Positives = 69/182 (37%), Gaps = 22/182 (12%)
Query: 240 ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
A+ +R A PP G R +GN G PG G AG+ G+ P G
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNA--GPPGPPGPAGKEGGKGPRGETGPAG- 917
Query: 300 DCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPGTQMSRGVRGQ----GAPSLLLQPVKP 354
V PP AGE S G P PGT +G+ GQ G P + P
Sbjct: 918 --RPGEVGPPGPPGPAGEKGSPGADGP--AGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973
Query: 355 GTAAPS--PRAEAVSAARSD--APRPKGRE-IRGEPGDLRPRGAEGCTAPAPTGLFREDA 409
G PS P + S A + P P G + G PG+ G EG AP G D
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE---SGREG--APGAEGSPGRDG 1028
Query: 410 SP 411
SP
Sbjct: 1029 SP 1030
Score = 42.0 bits (97), Expect = 0.001
Identities = 46/143 (32%), Positives = 57/143 (39%), Gaps = 23/143 (16%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
G PG GA+G R P + G D A P + GE RG P P+ +PG
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPGKNGDD------GEAGKPGRPGE--RGPPGPQGARGLPG 257
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPS-PRAEAVSAARSDAPRPKG-------REIRGE 384
T G++G S L G A P+ P+ E S + AP G R G
Sbjct: 258 TAGLPGMKGHRGFSGL--DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGA 315
Query: 385 PGDLRPRGAEGCTA----PAPTG 403
PG RG +G T P PTG
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTG 338
Score = 41.2 bits (95), Expect = 0.002
Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PG GA GE + P S +G G P P A P+ PG
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQG----VRGEPGPPGPAGAAGPAGN---------PGA 390
Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-------PRAEAVSAARSDAPRPKG-REIRGE 384
G +G GAP + P PG PS P ++ AP KG +GE
Sbjct: 391 DGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE 450
Query: 385 PGDL------RPRGAEGCTA----PAPTGL 404
PG + P G EG P PTGL
Sbjct: 451 PGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR--GHPHPRLTDVP 331
G PG G +GE + P ++ RG LA PP ++G P P
Sbjct: 971 GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAAPS----PRAEAVSAARSDAPRPKGREIRGEPG 386
G + RG G G P P PG P+ R E A + P G RG G
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG--ARGPAG 1088
Query: 387 DLRPRGAEGCT 397
PRG +G T
Sbjct: 1089 PQGPRGDKGET 1099
Score = 40.4 bits (93), Expect = 0.003
Identities = 47/152 (30%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----SRGHPHPR-LT 328
G PG +G +GE P S D G V + PP AGE +RG P P L
Sbjct: 425 GPPGPKGNSGEPGA--PGSKGDT-GAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Query: 329 DVPGTQMSRGVRGQGAPSLLLQPVKP----GTAAPS-PRAEAVSAAR-SDAPRPKGREIR 382
PG + G RG + P P G+ P+ P+ A R +A P + +
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541
Query: 383 GEPGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
G PG P G G P P G +D P P
Sbjct: 542 GSPGSPGPDGKTG--PPGPAG---QDGRPGPP 568
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/139 (30%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PG G AGE + P S +G A PP +AG+P P PG
Sbjct: 620 GPPGPAGPAGERGEQGPAGSPGFQGLP------GPAGPPGEAGKPGE-QGVPGDLGAPGP 672
Query: 334 QMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGA 393
+RG RG + P P + A A+ DA P +G PG G
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732
Query: 394 EGCTA-PAPTGLFREDASP 411
G P P G R DA P
Sbjct: 733 RGAAGLPGPKG-DRGDAGP 750
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 272 HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
H G G +GA G+ P+ G + A + P + G P G P P
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP--GAPGP-----A 319
Query: 332 GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKGRE----IRGEPG 386
G + + G G P P G A P AV A P+ P+G E +RGEPG
Sbjct: 320 GARGNDGATGAAGP-----PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 387 DLRPRGAEG 395
P GA G
Sbjct: 375 PPGPAGAAG 383
Score = 36.6 bits (83), Expect = 0.046
Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-----GHPHPRLT 328
G PG GAAG + +G + A G++ AP A PS G P P+
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAP-GIAGAPGFPGARGPSGPQGPGGPPGPKGN 432
Query: 329 D----VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS-PRAEAVSAARSDAPRPKGREIRG 383
PG++ G +G+ P + P PG A R + P P G RG
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGP--PGPAGEEGKRGARGEPGPTGLPGPPGE--RG 488
Query: 384 EPGDLRPRGAEGCTAPAPTGLFREDASPSCPR 415
PG GA+G P R P+ P+
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520
Score = 35.4 bits (80), Expect = 0.10
Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 22/162 (13%)
Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAG--EPSRGHPHPRLTDV 330
+G PG GA G+ P A G A PP AG P P
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE 828
Query: 331 PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAV--------------SAARSDAPRP 376
PG ++G G P+ P P +P A+ +A R P P
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Query: 377 KGREIRGEPGDLRPRGAEGCTAP----APTGLFREDASPSCP 414
G G PG P G EG P P G E P P
Sbjct: 889 SGN--AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Score = 32.3 bits (72), Expect = 0.87
Identities = 42/158 (26%), Positives = 54/158 (34%), Gaps = 35/158 (22%)
Query: 277 GREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS----RGHPHPRLT---- 328
G EG G+ R P A G D L PP G P G+ P+L+
Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYD 168
Query: 329 -------DVPGTQMSRGVRG-------------QGAPSLLLQPVKPGTAAP-SPRAEAVS 367
VPG G RG QG P +P +PG + P PR
Sbjct: 169 EKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG---EPGEPGASGPMGPRGPPGP 225
Query: 368 AARSDAPRPKGREIRGEPGDLRPRGAEGCTA-PAPTGL 404
++ G+ G PG+ P G +G P GL
Sbjct: 226 PGKNGDDGEAGKP--GRPGERGPPGPQGARGLPGTAGL 261
Score = 32.3 bits (72), Expect = 0.87
Identities = 46/145 (31%), Positives = 52/145 (35%), Gaps = 33/145 (22%)
Query: 274 GHPGREGAAG-EGA-GRD--PESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
G GREGA G EG+ GRD P + DR A PP G P G P P
Sbjct: 1010 GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG-------PPGAPGAP--GAPGP---- 1056
Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKP----GTAAPS-PRAEAVSAARSDAPRPKGRE---- 380
G G RG+ P+ PV P G A P PR + KG
Sbjct: 1057 -VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Query: 381 ------IRGEPGDLRPRGAEGCTAP 399
G PG+ P GA G P
Sbjct: 1116 LQGPPGPPGSPGEQGPSGASGPAGP 1140
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 47.8 bits (112), Expect = 2e-05
Identities = 84/347 (24%), Positives = 115/347 (33%), Gaps = 42/347 (12%)
Query: 60 PPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRA 119
PP PS PP AP + +P S +P P P Q+P ++ P V
Sbjct: 683 PPVSPSATPPSQAPPSLAAPPLQ-VPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSP 741
Query: 120 PS-----------PRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRS--RLARRPLAHLI 166
P+ PR AP + P A S + P ++ LA PL L
Sbjct: 742 PASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALP 801
Query: 167 QAVDFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGG 226
G FS + +L + + + +LA +P P A
Sbjct: 802 SPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAA-PLLQVPPSPP----ASPTLQAPR 856
Query: 227 RRVGSRRRATVTRARPSRSLAP--PPRRRRRAGQT--------HRRARTEVAGNVHVGHP 276
R +V+ R + +LAP PP R T H + T +
Sbjct: 857 RPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS 916
Query: 277 GREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT--- 333
G EG GA P A+ C AAW APP G P P P T PG+
Sbjct: 917 GPEG----GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADG 971
Query: 334 -----QMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR 375
+ AP L PGT+ A A + A S +P+
Sbjct: 972 LCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 1018
Score = 36.6 bits (83), Expect = 0.046
Identities = 87/342 (25%), Positives = 115/342 (33%), Gaps = 72/342 (21%)
Query: 123 RAKAHAHAPTHSLLSIPGAKTSRSRCSPSP-------------GRSRLARRPLAHLIQAV 169
+AKA A A T + + PG T R SP P + R+PLA +
Sbjct: 7 KAKAGAAARTPAARA-PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65
Query: 170 DFLGGIHDFSATGALGVHDRG--SRGRRRRRLLAPRSRCDIPRR--APHRLLAGGRAAGG 225
G SA A G SR R + R P + +P + + GRA+G
Sbjct: 66 G--GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGT 123
Query: 226 GR-----RVGSRRRATVTRAR------PSRSLAPPPRRRRRAGQTH-----RRARTEVAG 269
R + G R A T AR P RS RR +G T AR A
Sbjct: 124 TRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAA 183
Query: 270 NVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
VG P A P + R+ A+ + P P PS G R
Sbjct: 184 GTEVGLP----RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR--- 236
Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLR 389
SR + P L P + G PS R + A P+PKG + P
Sbjct: 237 ----PASRSLSSSATP--LSSPARSG---PSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287
Query: 390 PRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLLSPAP 431
P R+DA+P+ LG L +P+P
Sbjct: 288 P---------------RKDAAPA-----LGPLSSSPLATPSP 309
Score = 29.3 bits (64), Expect = 7.3
Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 17 PSPRSQEALRVGGEV----GSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGSG 72
P P Q+ LR+ E G + G R + G P PS P
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPT-----PGTPS---PAMA 177
Query: 73 AAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPT 132
R A + LP RPAP +P P SV S + +P+ R + A
Sbjct: 178 RRSRAAGTEVGLP---RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG- 233
Query: 133 HSLLSIPGAKTSRSRCSP--SPGRS 155
L P +++ S +P SP RS
Sbjct: 234 ---LQRPASRSLSSSATPLSSPARS 255
Score = 29.3 bits (64), Expect = 7.3
Identities = 31/110 (28%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 307 SLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAV 366
SLAPPPLQ PH P AP L P P T P ++
Sbjct: 540 SLAPPPLQTASAPLTTPHLETPPCP------------APCPLQAPPSPLTTPPPETPSSI 587
Query: 367 SAARSDAPRP-KGREIRGEPG-DLRPRGAEGCTAPAPTGLFREDASPSCP 414
+ AP ++G P L P AP L A PS P
Sbjct: 588 ATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPP 637
Score = 28.9 bits (63), Expect = 9.6
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 78 APSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDT-PAGVFVRAPSPRAKAHAHAPTHSLL 136
AP AL R R P P + SP++ + AG V P P A PT
Sbjct: 150 APKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR 206
Query: 137 SIPGAKTSRSRCSPSPGRSR 156
+ + S PSP R
Sbjct: 207 KSVSSASEHSTTEPSPAARR 226
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPH-PRLTDVP 331
G PG +G G+ P+ +G D + + P ++G P +G P P L +P
Sbjct: 279 GEPGEQGEKGDAGENGPKGDTGEKG-DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLP 337
Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
G + G G QG P L P PGT R EA P GR RGEPG P
Sbjct: 338 GIKGEPGFIGPQGEPGL---PGLPGTKGE--RGEA---------GPPGRGERGEPGAPGP 383
Query: 391 RGAEG 395
+G +G
Sbjct: 384 KGKQG 388
Score = 36.6 bits (83), Expect = 0.046
Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 41/167 (24%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-------RGHPHPR 326
G PG +G GE R P+ S RG + PP Q G+ G+ H
Sbjct: 379 GAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEA 438
Query: 327 LTDV-----------PGTQMSRGVRG-QGAPSLL-------------------LQPVKPG 355
L + PG Q +G +G QG+P + + K G
Sbjct: 439 LQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG 498
Query: 356 TAAPS-PRAEAVSAARSDA--PRPKGREIRGEPGDLRPRGAEGCTAP 399
P P A + + D+ P P+G I G PG P G G P
Sbjct: 499 IGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGP 545
Score = 33.5 bits (75), Expect = 0.39
Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 36/161 (22%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-----QAGEPS-------RG 321
G PG G GE P ++G S+ P + Q GEP G
Sbjct: 222 GVPGEPGKPGEQGLMGPLGPPGQKG--------SIGAPGIPGMNGQKGEPGLPGAVGQNG 273
Query: 322 HPHPRLTDVPGTQMSRGVRGQGAPSLLL-QPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
P P+ PG Q +G G+ P + PG++A + E + R P KG
Sbjct: 274 IPGPK--GEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR---PGQKGEP 328
Query: 381 ----------IRGEPGDLRPRGAEGCTAPAPTGLFREDASP 411
I+GEPG + P+G G T R +A P
Sbjct: 329 GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGP 369
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPH-PRLTDVP 331
G PG +G G+ P+ +G D + + P ++G P +G P P L +P
Sbjct: 279 GEPGEQGEKGDAGENGPKGDTGEKG-DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLP 337
Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
G + G G QG P L P PGT R EA P GR RGEPG P
Sbjct: 338 GIKGEPGFIGPQGEPGL---PGLPGTKGE--RGEA---------GPPGRGERGEPGAPGP 383
Query: 391 RGAEG 395
+G +G
Sbjct: 384 KGKQG 388
Score = 36.6 bits (83), Expect = 0.046
Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 41/167 (24%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-------RGHPHPR 326
G PG +G GE R P+ S RG + PP Q G+ G+ H
Sbjct: 379 GAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEA 438
Query: 327 LTDV-----------PGTQMSRGVRG-QGAPSLL-------------------LQPVKPG 355
L + PG Q +G +G QG+P + + K G
Sbjct: 439 LQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG 498
Query: 356 TAAPS-PRAEAVSAARSDA--PRPKGREIRGEPGDLRPRGAEGCTAP 399
P P A + + D+ P P+G I G PG P G G P
Sbjct: 499 IGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGP 545
Score = 33.5 bits (75), Expect = 0.39
Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 36/161 (22%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-----QAGEPS-------RG 321
G PG G GE P ++G S+ P + Q GEP G
Sbjct: 222 GVPGEPGKPGEQGLMGPLGPPGQKG--------SIGAPGIPGMNGQKGEPGLPGAVGQNG 273
Query: 322 HPHPRLTDVPGTQMSRGVRGQGAPSLLL-QPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
P P+ PG Q +G G+ P + PG++A + E + R P KG
Sbjct: 274 IPGPK--GEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR---PGQKGEP 328
Query: 381 ----------IRGEPGDLRPRGAEGCTAPAPTGLFREDASP 411
I+GEPG + P+G G T R +A P
Sbjct: 329 GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGP 369
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 47.0 bits (110), Expect = 3e-05
Identities = 53/197 (26%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 240 ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
A P PP + Q R A EV GHPG G G P + G
Sbjct: 599 AGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAG- 657
Query: 300 DCAAWGVSLAPPPLQAGEPSRGHPHPR----LTDVPGTQMSRGVRGQ----GAPSLLLQP 351
+ PP +Q G P P+ L +PG + G G+ G P +P
Sbjct: 658 -------AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP 710
Query: 352 VKPG-TAAPSPRAEAVSAARSDAPRPKGRE----------IRGEPGDLRPRGAEGCTAP- 399
PG A P S AP P+G + G+ GD P G +G P
Sbjct: 711 GLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPR 770
Query: 400 APTGLFREDASPSCPRE 416
P G ++ SP P E
Sbjct: 771 GPPG---KNGSPGSPGE 784
Score = 43.1 bits (100), Expect = 5e-04
Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHP-HPRLTDVP 331
VG PG G G+ R + +A G P G P +G P L P
Sbjct: 418 VGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSP 477
Query: 332 GTQMSRGVRG-QGAPSLLLQPVK---PGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGD 387
G G +G +GAP + P PG P S D P R + G PG
Sbjct: 478 GLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGP--SGPPGDKGSPGSRGLPGFPGP 535
Query: 388 LRPRGAEGCT---APAPTGLFREDASPSCP 414
P G +G + +P L +D CP
Sbjct: 536 QGPAGRDGLSSLLSPGDINLLAKDVCNDCP 565
Score = 37.7 bits (86), Expect = 0.021
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 39/223 (17%)
Query: 188 DRGSRGR--RRRRLLAPRS---RCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARP 242
D+G++G R + P S +C +P+ H A G + R + + A+
Sbjct: 182 DQGAQGACGRGNTSVLPSSVAPQCSMPKGTGHEFSAALGTQGPADQRADARASCILAAKT 241
Query: 243 SRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEG--AGRDPESSADRRGCD 300
+ P ++ G+ R + G PG G GE AGR E
Sbjct: 242 A------PGLKQLNGEPGERGEDGLPGK-----PGLRGEIGEQGLAGRPGEKGEA----- 285
Query: 301 CAAWGVSLAP--PPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAA 358
G+ AP P ++ + +G +PG + RG +G+ P+ P PGT +
Sbjct: 286 ----GLPGAPGFPGVRGEKGDQGEKGE--LGLPGLKGDRGEKGEAGPAG--PPGLPGTTS 337
Query: 359 ---PSPRA---EAVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
P PR + + D P ++G PG+L P+G G
Sbjct: 338 LFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTG 380
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 47.0 bits (110), Expect = 3e-05
Identities = 53/197 (26%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 240 ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
A P PP + Q R A EV GHPG G G P + G
Sbjct: 1152 AGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAG- 1210
Query: 300 DCAAWGVSLAPPPLQAGEPSRGHPHPR----LTDVPGTQMSRGVRGQ----GAPSLLLQP 351
+ PP +Q G P P+ L +PG + G G+ G P +P
Sbjct: 1211 -------AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP 1263
Query: 352 VKPG-TAAPSPRAEAVSAARSDAPRPKGRE----------IRGEPGDLRPRGAEGCTAP- 399
PG A P S AP P+G + G+ GD P G +G P
Sbjct: 1264 GLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPR 1323
Query: 400 APTGLFREDASPSCPRE 416
P G ++ SP P E
Sbjct: 1324 GPPG---KNGSPGSPGE 1337
Score = 37.4 bits (85), Expect = 0.027
Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query: 273 VGHPGREGAAGE-GAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDV 330
VG PG +G G+ G G + +G + L PP + G RG P
Sbjct: 507 VGAPGPKGEKGDVGIGPFGQGEKGEKG------SLGLPGPPGRDGSKGMRGEPGE--LGE 558
Query: 331 PGTQMSRGVRG-QGAPSLLLQPVKPG-TAAPSPRAEAVSAARSDAPRPKGRE-IRGEPGD 387
PG G+RG QG P L P PG AP + E +G + G+PGD
Sbjct: 559 PGLPGEVGMRGPQGPPGL---PGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGD 615
Query: 388 LRPRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLL---SPAPRPR 434
+G G + A + D P+ P V GS +++ L AP PR
Sbjct: 616 TGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPR 665
Score = 36.6 bits (83), Expect = 0.046
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 22/142 (15%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----SRGHPHPR--- 326
G PG G GE R + + G LA P + GE + G P R
Sbjct: 759 GPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK 818
Query: 327 -------LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAA---PSPRA---EAVSAARSDA 373
+PG + RG +G+ P+ P PGT + P PR + + D
Sbjct: 819 GDQGEKGELGLPGLKGDRGEKGEAGPAG--PPGLPGTTSLFTPHPRMPGEQGPKGEKGDP 876
Query: 374 PRPKGREIRGEPGDLRPRGAEG 395
P ++G PG+L P+G G
Sbjct: 877 GLPGEPGLQGRPGELGPQGPTG 898
Score = 32.0 bits (71), Expect = 1.1
Identities = 46/151 (30%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGC--DCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDV 330
G PG++G GE E S G D A G+ P + GEP RG P L
Sbjct: 943 GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPG--LPGP 1000
Query: 331 PGTQMSRG-VRG--------------QGAPSLLLQPVK---PGTAAPSPRAEAVSAARSD 372
GT+ + G VRG +GAP + P PG P S D
Sbjct: 1001 LGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGP--SGPPGD 1058
Query: 373 APRPKGREIRGEPGDLRPRGAEGCTAPAPTG 403
P R + G PG P G +G AP G
Sbjct: 1059 KGSPGSRGLPGFPGPQGPAGRDG--APGNPG 1087
Score = 30.8 bits (68), Expect = 2.5
Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PGR+G+ G R G PP G P R P L G
Sbjct: 539 GPPGRDGSKGM---RGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGA-PGLQGERGE 594
Query: 334 QMSRGVRGQ-------GAPSLLLQPVKPG-TAAPSPRAEAVSAARSDAPRPKGREI---- 381
+ +RG +G+ G P Q +PG + P+ E + P G +
Sbjct: 595 KGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEG 654
Query: 382 -RGEPGDLRPRGAEGCTAPAPTG 403
+GE G PRG +G AP P G
Sbjct: 655 LKGEQGAPGPRGHQG--APGPPG 675
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.2 bits (108), Expect = 6e-05
Identities = 46/134 (34%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-GHPH----PRLT 328
G PG +G GE + RG LA AGEP R G+P P
Sbjct: 969 GSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGT---AGEPGRDGNPGSDGLPGRD 1025
Query: 329 DVPGTQMSRGVRGQ-GAPSLLLQPVKPGTAAPS----PRAEAVSAARSDAPRPKGREIRG 383
PG + RG G GAP P PG P+ R E+ A + AP P G RG
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGS--RG 1083
Query: 384 EPGDLRPRGAEGCT 397
PG PRG +G T
Sbjct: 1084 APGPQGPRGDKGET 1097
Score = 43.9 bits (102), Expect = 3e-04
Identities = 55/190 (28%), Positives = 67/190 (35%), Gaps = 23/190 (12%)
Query: 242 PSRSLAPPPRRRRRAGQTHRRARTEVAGNVHV-GHPGREGAAGEGAGRDPESSADRRGCD 300
P + AP P R G R R + G G+ G G+ G+ P +A G
Sbjct: 290 PGENGAPGPMGPR--GAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
Query: 301 CAAWGVSLAPPPLQAGEPS-RGHPHPR-------LTDVPGTQMSRGVRGQ-------GAP 345
A V A P G P RG P P+ PG S G +G+ GAP
Sbjct: 348 GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Query: 346 SLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCT-APAPTGL 404
L+ PG A A R A P +GEPG RG G P G
Sbjct: 408 GLMGARGPPGPAG----ANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGE 463
Query: 405 FREDASPSCP 414
+D SP P
Sbjct: 464 DGKDGSPGEP 473
Score = 43.5 bits (101), Expect = 4e-04
Identities = 43/147 (29%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPG 332
+G PG +G GE G + + G + P Q G+ G P L + G
Sbjct: 734 LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGA-PGLPGIAG 792
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTA----APSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
+ S G RG+ P PG A AP E AP KG G PG
Sbjct: 793 PRGSPGERGETGP--------PGPAGFPGAPGQNGEPGGKGERGAPGEKGEG--GPPGVA 842
Query: 389 RPRGAEG-CTAPAPTGLFREDASPSCP 414
P G G P P G+ E SP P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGP 869
Score = 40.0 bits (92), Expect = 0.004
Identities = 43/152 (28%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 274 GHPGREGAAGEGAG---RDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTD 329
G PG +G AGE P +A G D G + P G P S G P P
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP---- 553
Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAA-PSPRA-EAVSAARSDAPRPKGREIRGEPGD 387
PG+Q G G PS +PG P P+ + + P G +G PG
Sbjct: 554 -PGSQGESGRPGPPGPSG--PRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK 610
Query: 388 LRPRGAEGCTAPAPTGLFREDASPSCPREVLG 419
G +G P G + D P P+ + G
Sbjct: 611 NGETGPQGPPGPTGPGGDKGDTGPPGPQGLQG 642
Score = 37.4 bits (85), Expect = 0.027
Identities = 39/132 (29%), Positives = 45/132 (34%), Gaps = 28/132 (21%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
G PG +G AG R P A G A PP + G+ + G P P PG
Sbjct: 669 GAPGGKGDAGAPGERGPPGLAGAPGLRGGA-----GPPGPEGGKGAAGPPGPPGAAGTPG 723
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
Q G RG G +P P+ D P G G PG PRG
Sbjct: 724 LQGMPGERG-------------GLGSPGPKG--------DKGEPGGPGADGVPGKDGPRG 762
Query: 393 AEG-CTAPAPTG 403
G P P G
Sbjct: 763 PTGPIGPPGPAG 774
Score = 36.2 bits (82), Expect = 0.060
Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 16/132 (12%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDVPG 332
G PG G GE + + G A PP AG P RG P PG
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP-----PG 702
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
+ +G G P PG AA +P + + R P + +GEPG G
Sbjct: 703 PEGGKGAAGPPGP--------PG-AAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADG 753
Query: 393 AEGCTAP-APTG 403
G P PTG
Sbjct: 754 VPGKDGPRGPTG 765
Score = 35.8 bits (81), Expect = 0.078
Identities = 43/133 (32%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 274 GHPGREGAAG--EGAGRDPESSADRRGCDCAAWGVS---LAPPPLQAGEPSRGHP----- 323
G PG G G E P++ + + GV+ LA P AG P P
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSG 189
Query: 324 HPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAP-RPKGREIR 382
HP PG Q G GQ PS P PG PS A S P RP R +
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPS--GPPGPPGAIGPS--GPAGKDGESGRPGRPGERGLP 245
Query: 383 GEPGDLRPRGAEG 395
G PG P G G
Sbjct: 246 GPPGIKGPAGIPG 258
Score = 35.8 bits (81), Expect = 0.078
Identities = 54/215 (25%), Positives = 67/215 (31%), Gaps = 29/215 (13%)
Query: 208 IPRRAPHRLLAGGRAAGG-----GRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR 262
+P A R G R G G + + R A P + P R G R
Sbjct: 478 LPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG 537
Query: 263 ARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGH 322
G G PG G+ GE P + RG Q G G
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG---------------QPG--VMGF 580
Query: 323 PHPRLTD-VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGR 379
P P+ D PG RG G G P P K G P P + D P +
Sbjct: 581 PGPKGNDGAPGKNGERG--GPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ 638
Query: 380 EIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
++G PG P G G P G + +P P
Sbjct: 639 GLQGLPGTGGPPGENG--KPGEPGPKGDAGAPGAP 671
Score = 35.8 bits (81), Expect = 0.078
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 30/137 (21%)
Query: 272 HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR----L 327
H G PG G AG+ R A G AP P AG SRG P P+
Sbjct: 1048 HPGPPGPVGPAGKSGDRGESGPAGPAG----------APGP--AG--SRGAPGPQGPRGD 1093
Query: 328 TDVPGTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-------PKGR 379
G + + G++G +G P P PG+ P+ + A+ + PR P G+
Sbjct: 1094 KGETGERGAAGIKGHRGFPG---NPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Query: 380 E-IRGEPGDLRPRGAEG 395
+ G PG + P G G
Sbjct: 1151 DGTSGHPGPIGPPGPRG 1167
Score = 34.7 bits (78), Expect = 0.17
Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-QAGEPS-RGHPHPRLTDVP 331
GH G +G GE G G + AP P+ G P RG P +P
Sbjct: 264 GHRGFDGRNGEKGETGAPGLKGENGLP----GENGAPGPMGPRGAPGERGRP-----GLP 314
Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTA----APSPRAEAVSAARSDAPRPKGREIRGEPG 386
G +RG G +G+ P PGTA +P + E A + G+ RGEPG
Sbjct: 315 GAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ--RGEPG 372
Query: 387 DLRPRGAEGCTAPAPTGL 404
GA+G P P G+
Sbjct: 373 PQGHAGAQG--PPGPPGI 388
Score = 32.7 bits (73), Expect = 0.66
Identities = 40/124 (32%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 274 GHPGREGAAGEGAGRDPESSADRR-GCDCAAWGVSLAPPPLQAGEPSR-GHPHPRLTDVP 331
G PG G AGE GRD +D G D + G G P GHP P
Sbjct: 999 GLPGLAGTAGE-PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP--PGPV 1055
Query: 332 GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPR 391
G G RG+ P+ AP P A AP P+G RG+ G+ R
Sbjct: 1056 GPAGKSGDRGESGPA-------GPAGAPGP------AGSRGAPGPQGP--RGDKGETGER 1100
Query: 392 GAEG 395
GA G
Sbjct: 1101 GAAG 1104
Score = 32.3 bits (72), Expect = 0.87
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT----D 329
G PG GA G P A + G + A P AG SRG P P+
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG--SRGAPGPQGPRGDKG 1095
Query: 330 VPGTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
G + + G++G +G P P PG+ P+ + A+ G PG
Sbjct: 1096 ETGERGAAGIKGHRGFPG---NPGAPGSPGPAGQQGAI----------------GSPGPA 1136
Query: 389 RPRGAEGCTAP 399
PRG G + P
Sbjct: 1137 GPRGPVGPSGP 1147
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 46.2 bits (108), Expect = 6e-05
Identities = 77/295 (26%), Positives = 104/295 (35%), Gaps = 55/295 (18%)
Query: 140 GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRL 199
G + + G R A + + A+ L + +A LGV +GR +
Sbjct: 10 GGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQGR----V 65
Query: 200 LAPRSRCDIPRRA-----------PH--RLLAGGRAAGGGRRVGSRRRATVTRARPSRSL 246
A ++ RRA PH RLL ++ + R PS +
Sbjct: 66 AALEEERELLRRAGPPGALDAWAEPHLERLLR--------EKLDGLAKIRTAREAPSECV 117
Query: 247 APP--------PRRRRRAGQTHRRARTEVAGNVHV-GHPGREGAAGEGAGRDPESSADRR 297
PP P RR G + R G + + G PG G GE +
Sbjct: 118 CPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQ 177
Query: 298 GCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVP-GTQMSRGVRGQGAPSLLLQPVKPG 355
G D AA PP G P +RG P D P G Q G +G+ + P P
Sbjct: 178 GQDGAAG------PPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGP- 230
Query: 356 TAAPSPRAE-AVSAARSD-----APRPKGREIRGEPGDLRPRGAEGCT-APAPTG 403
P P+ E V + D P P G +GEPG + PRG G AP P G
Sbjct: 231 ---PGPKGEPGVPGKKGDDGTPSQPGPPGP--KGEPGSMGPRGENGVDGAPGPKG 280
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/160 (32%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 274 GHPGREGAAGE-GAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDV-P 331
G PG +GA GE G+ D DR GV P ++ RG P PR D P
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDR--------GV----PGIKG---DRGEPGPRGQDGNP 2152
Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAA----PSPRAEAVSAARSDAPRPKGREIRGEPG 386
G RG+ G +G P L PG P P A + P G ++GEPG
Sbjct: 2153 GLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSG--LKGEPG 2210
Query: 387 DLRP--RGAEGCTA-------PAPTGLFREDASPSCPREV 417
+ P RG G T P P+GL SP P +V
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQV 2250
Score = 45.4 bits (106), Expect = 1e-04
Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 25/143 (17%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDVPG 332
G PGR+GA+G+ RG L P GEP G P + +PG
Sbjct: 2257 GAPGRDGASGKDGD---------RGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPG 2307
Query: 333 TQMSRGVRGQGAPSLLLQP-VKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPR 391
+ +G G A L+ +P K P PR E A R+ GEPGD
Sbjct: 2308 AKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRA-----------GEPGDPGED 2356
Query: 392 GAEGCTAPAPTGLFREDASPSCP 414
G +G AP P G F+ D P
Sbjct: 2357 GQKG--APGPKG-FKGDPGVGVP 2376
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP---PLQAGEPSR-GHPHPR-LT 328
G PG G AGE R P R G D + P +AG+P R G P R
Sbjct: 1758 GDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQ 1817
Query: 329 DVPGTQMSRGVRGQ----GAPSLLLQPVKPGTAAPSPR----AEAVSAARSDAPRPKGRE 380
+PG G+ G+ G P L + +PG R ++ ++ R PKG
Sbjct: 1818 GLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGE- 1876
Query: 381 IRGEPGDLRPRGAEGCTAPAPTG 403
RG PG L P+G G P P G
Sbjct: 1877 -RGAPGILGPQGPPG--LPGPVG 1896
Score = 40.8 bits (94), Expect = 0.002
Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----------SRGHP 323
G PG G G + P SA +G P +AG P S G P
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLP 1331
Query: 324 HPRLTDVPGTQMSRGVRGQ-GAPSLLLQPVKPG----------TAAPSPRAEAVSAARSD 372
PR PG + RG +G+ GAP ++ PG + P PR
Sbjct: 1332 GPR--GDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRG 1389
Query: 373 APRPKGREIRGEPGDLRPRG----AEGCTAPAPTGLFREDASP 411
P G ++G+ GD RG EG AP GL SP
Sbjct: 1390 PPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432
Score = 39.7 bits (91), Expect = 0.005
Identities = 46/158 (29%), Positives = 53/158 (33%), Gaps = 24/158 (15%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
G PG G A +G D +R G++ P L S G P PG
Sbjct: 1389 GPPGLPGTAMKG---DKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGP--VGPPGK 1443
Query: 334 QMSRGVRGQGAPSLLLQPVKPGTAA----------------PSPRAEAVSAARSDAPRPK 377
+ +G GAP L QP PG P P EA P P
Sbjct: 1444 KGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPA 1503
Query: 378 GREIRGEPGDLRPRGAEGCTA-PAPTGLFREDASPSCP 414
G RG PG GA+G P PTG E P P
Sbjct: 1504 GS--RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP 1539
Score = 38.9 bits (89), Expect = 0.009
Identities = 45/151 (29%), Positives = 56/151 (37%), Gaps = 29/151 (19%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGC-----DCAAWGVSLAPPPLQAGEPS-------RG 321
G PGREG G P S G D GV L P + GEP G
Sbjct: 2428 GPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPG 2487
Query: 322 HPHPR-LTDVPGTQMSRGVRG----------QGAPSLLLQPVKPGTAAPS-----PRA-E 364
PR LT PG++ RG +G +G +++L P P A PR +
Sbjct: 2488 QEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD 2547
Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
R D P + +GEPGD G G
Sbjct: 2548 GDKGPRGDNGDPGDKGSKGEPGDKGSAGLPG 2578
Score = 37.7 bits (86), Expect = 0.021
Identities = 47/152 (30%), Positives = 55/152 (36%), Gaps = 30/152 (19%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVSLAPPPL----QAGEPSR---- 320
G PG G AGE R P A RG A G P P + GEP R
Sbjct: 1483 GFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDP 1542
Query: 321 -------GHPHPRLTDV--PGTQMSRGVRGQGAPSLLLQPVKPGTAA-PSPRAEAVSAAR 370
P DV G + + GV+G+ P L+ P PG P R R
Sbjct: 1543 AVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGR 1602
Query: 371 ------SDAPRPKGREIR-GEPGDLRPRGAEG 395
S P KG R G PG + PRG +G
Sbjct: 1603 AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDG 1634
Score = 36.6 bits (83), Expect = 0.046
Identities = 49/180 (27%), Positives = 63/180 (35%), Gaps = 36/180 (20%)
Query: 247 APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRD------PESSADRRGCD 300
A PP R AG V G G PG+EG G R P+ +G +
Sbjct: 2646 AGPPGRPGLAGHKGEMGEPGVPGQS--GAPGKEGLIGPKGDRGFDGQPGPKGDQGEKG-E 2702
Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP----GTQMSRGVRGQGAPSLLLQPVKPGT 356
G+ P P + S G P P + P G Q +G RG ++ P PG
Sbjct: 2703 RGTPGIGGFPGP-SGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPG- 2760
Query: 357 AAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEG---CTAPAPTGLFREDASPSC 413
AP R E +G PG PRG +G T G R++ S C
Sbjct: 2761 -APGERGE-----------------QGRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHC 2802
Score = 33.1 bits (74), Expect = 0.51
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 39/163 (23%)
Query: 244 RSLAPPPRRRRRAGQTHRRARTEVAGN-----VHVGHPGREGAAGEGAGRDPESSADRRG 298
R L PP R G+ + G+ V +G PG GA G+ R P +G
Sbjct: 2492 RGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKG 2551
Query: 299 CDCAAWGVSLAPPPLQAGEP----SRGHPHPR-LTDVPGTQMSRGVRG-QGAPSLLLQPV 352
P G+P S+G P + +PG RG+ G QG P P
Sbjct: 2552 ------------PRGDNGDPGDKGSKGEPGDKGSAGLPGL---RGLLGPQGQPGAAGIPG 2596
Query: 353 KPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
PG SP + V R + +G+ G + PRG +G
Sbjct: 2597 DPG----SPGKDGVPGIRGE---------KGDVGFMGPRGLKG 2626
Score = 32.7 bits (73), Expect = 0.66
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 27/112 (24%)
Query: 311 PPLQAGEPSR-GHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAP--SPRAEAVS 367
PP G P R G P P+ PG+ ++G RG P +P PG A +P A +
Sbjct: 1270 PPGDPGLPGRTGAPGPQ--GPPGSATAKGERG--FPGADGRPGSPGRAGNPGTPGAPGLK 1325
Query: 368 AARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLG 419
+ P P RG+PG+ PRG +G P P +V+G
Sbjct: 1326 GSPG-LPGP-----RGDPGERGPRGPKG--------------EPGAPGQVIG 1357
Score = 32.7 bits (73), Expect = 0.66
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-QAGEPSRGHPHPRLTDVPG 332
G PG+ G+ GE R P + +G P PL +AGE P PG
Sbjct: 1456 GLPGQPGSPGEQGPRGPPGAIGPKGDRGF-------PGPLGEAGEKGERGP-------PG 1501
Query: 333 TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREI---RGEPGDL 388
SRG+ G G P PG + E R P G + +GE GD+
Sbjct: 1502 PAGSRGLPGVAGRPGAKGPEGPPGPTGR--QGEKGEPGRPGDPAVVGPAVAGPKGEKGDV 1559
Query: 389 RPRGAEGCT 397
P G G T
Sbjct: 1560 GPAGPRGAT 1568
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/179 (29%), Positives = 59/179 (32%), Gaps = 21/179 (11%)
Query: 210 RRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP---PRRRRRAGQTHRRARTE 266
R+ PH+ GG G R SR T T A P+RS PP PR Q+ A
Sbjct: 3 RKRPHQQGGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGA 62
Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
V HP R GE A RG + L+ PL+ G RG P
Sbjct: 63 VPSPPAAAHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRP--- 119
Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
G PS L P PG A A A A GR R P
Sbjct: 120 -----------GKGPPPNPSRRLPPAPPGGRRTWLSALATGPAAGGA----GRRRRSPP 163
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.1 bits (105), Expect = 1e-04
Identities = 46/173 (26%), Positives = 62/173 (35%), Gaps = 26/173 (15%)
Query: 250 PRRRRRAGQTHRRARTEVAGNVH----VGHPGREGAAGEGAGRDPESSADRRGCDCAAWG 305
P ++ +AG+ + + AGN G GR G +GE + P +G C A
Sbjct: 669 PGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACP 728
Query: 306 VSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEA 365
AG P + PG + +G G G P QP PG P P +
Sbjct: 729 SLQGTVTDMAGRPGQ----------PGPKGEQGPEGVGRPGKPGQPGLPGVQGP-PGLKG 777
Query: 366 VSAARSDAPRPKGREIRGEPGDLRPRGAEGCTA-------PAPTGLFREDASP 411
V P P GR ++G G+ G G P PTG SP
Sbjct: 778 VQG----EPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSP 826
Score = 43.5 bits (101), Expect = 4e-04
Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGC--DCAAWGVSLAP-PPLQAGEPS-RGHPHPRLTD 329
GHPG G G+ P S R G + A G P PP G P G P P
Sbjct: 1249 GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGIS 1308
Query: 330 VPGTQMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
G + RG G+ G L QP PG P AA + P P + G PG
Sbjct: 1309 AVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGP-PGKQGFYGPPGPK 1367
Query: 389 RPRGAEG 395
GA G
Sbjct: 1368 GDPGAAG 1374
Score = 41.2 bits (95), Expect = 0.002
Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-GHPHPRLTDVPG 332
G PG G AG R P+ ++ +G PP G P + G P P PG
Sbjct: 1126 GLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGP-----PG 1180
Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
Q +G G PS L P PG P P + + + +RG+PG P G
Sbjct: 1181 PQAEKGSEGIRGPSGL--PGSPGPPGP-PGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPG 1237
Query: 393 AEGCTAPAPTGLFREDASPSCP 414
G P G + P P
Sbjct: 1238 LMG-----PPGFKGKTGHPGLP 1254
Score = 39.7 bits (91), Expect = 0.005
Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 44/192 (22%)
Query: 265 TEVAGNVHVGHPGREGAAG-EGAGRDPESSADRRGCDCAAWGVSLAPPPLQA-----GEP 318
T++AG G PG +G G EG GR + GV PP L+ G P
Sbjct: 735 TDMAGRP--GQPGPKGEQGPEGVGRPGKPGQP------GLPGVQ-GPPGLKGVQGEPGPP 785
Query: 319 SRG----HPHPRLTDVPGTQMSRGVRG----------QGAPSLLLQPVKPGTAAPSPRAE 364
RG P +PG Q G RG QG+P VK T P
Sbjct: 786 GRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPG-----VKGATGPVGPPGA 840
Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG----CTAPAPTGLFREDASPSCPREVLGS 420
+VS + +RG PG+ PRG +G C+ P+ L P P G
Sbjct: 841 SVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLI-FSGMPGAP----GL 895
Query: 421 WMRKSLLSPAPR 432
WM S P P+
Sbjct: 896 WMGSS-WQPGPQ 906
Score = 36.2 bits (82), Expect = 0.060
Identities = 42/138 (30%), Positives = 50/138 (36%), Gaps = 16/138 (11%)
Query: 272 HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
HVG PG G G S+ +G A LA P Q G P GHP P P
Sbjct: 1292 HVGPPGPPGQPGPAG----ISAVGLKGDRGATGERGLAGLPGQPGPP--GHPGP--PGEP 1343
Query: 332 GTQMSRGVRGQGAPSLLLQPVKP--GTAAPSPRAEAVSAARSDAPRPKGREIR----GEP 385
GT + G G P P A + +A R+ P G+ G P
Sbjct: 1344 GTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPP 1403
Query: 386 GDLRPRGAEGCTAPAPTG 403
G RG G AP P+G
Sbjct: 1404 GPAGERGHPG--APGPSG 1419
Score = 33.9 bits (76), Expect = 0.30
Identities = 38/136 (27%), Positives = 45/136 (33%), Gaps = 22/136 (16%)
Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPG 332
VG PG G G R E RG + P G P +PG
Sbjct: 1017 VGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPG----------LPG 1066
Query: 333 TQMSRGVRG----QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
Q RG+ G +G P QP PG P P + R GE G+
Sbjct: 1067 LQGERGLTGLTGDKGEPGPPGQPGYPGATGP-PGLPGIKGERGYTGSA------GEKGEP 1119
Query: 389 RPRGAEGCTA-PAPTG 403
P G+EG P P G
Sbjct: 1120 GPPGSEGLPGPPGPAG 1135
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 44.7 bits (104), Expect = 2e-04
Identities = 101/369 (27%), Positives = 125/369 (33%), Gaps = 80/369 (21%)
Query: 89 RPAPRQKPFPVPT----SQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTS 144
R PR P T + P V+ PA +P A SL PGA
Sbjct: 193 RTMPRDTGQPTRTMLWDTGQPCVLPQGPA------VTPPAFPGVQETLPSLPVAPGAPGQ 246
Query: 145 RSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATG----------------ALGV-- 186
R R SP R R R+ L HL D L G HD G +LG+
Sbjct: 247 RGRPSPYSLRVRGPRQDLPHL----DGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPH 302
Query: 187 -------HDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTR 239
H + GRR R L PR R PR R + ++ GGG G A
Sbjct: 303 VVAEELEHSKPGGGRRSRE-LRPRYR---PRTPWLRTVCRTQSPGGGG--GQDPTALGAA 356
Query: 240 ARPSRSLAPPPRRRRRAGQTH----RRARTEVAGNVHVGHPGREG-----AAGEGAGRDP 290
A +R PPRRR T RR R V + + G EG A + A RD
Sbjct: 357 ALGTR----PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDR 412
Query: 291 ESSADRRGCDCAAW-----GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAP 345
E + + A G+ A PP Q R PH + ++GV
Sbjct: 413 EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
Query: 346 SLLLQPVKPG------TAAPSPRAEAVSAARSDAPRPK----GREIR---GEPGDLRPRG 392
S P PG + P P A+ S A P P GR +R G P + G
Sbjct: 473 S----PSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSG 528
Query: 393 AEGCTAPAP 401
G P
Sbjct: 529 RRGGAKAQP 537
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.7 bits (104), Expect = 2e-04
Identities = 80/335 (23%), Positives = 105/335 (31%), Gaps = 62/335 (18%)
Query: 60 PPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRA 119
PP PS PP AP + +P S +P P P Q+P ++ P + +
Sbjct: 458 PPVSPSATPPSQAPPSLAAPPLQ-VPPSPPASPPMSPSATPPPQAPPPLAAPPLQL-AKP 515
Query: 120 PSPRAKAHAHAPTHSLLSIPGAKTSRSRCSPS---PGRSRLARRPLAHLIQAVDFLGGIH 176
P A A P +L S P + ++ SPS P P A + A L
Sbjct: 516 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 575
Query: 177 DFSATGALGVH--------DRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRR 228
A+ L D G R LAP P R+P L+G AG
Sbjct: 576 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP-PSRSPSSTLSGPDLAG---- 630
Query: 229 VGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGR 288
H + T + G EG GA
Sbjct: 631 -------------------------------HSSSATSTPEELRGYDSGPEG----GAAA 655
Query: 289 DPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT--------QMSRGVR 340
P A+ C AAW APP G P P P T PG+ +
Sbjct: 656 SPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADGLCTIYETEGPES 714
Query: 341 GQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR 375
AP L PGT+ A A + A S +P+
Sbjct: 715 ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 749
Score = 43.5 bits (101), Expect = 4e-04
Identities = 88/352 (25%), Positives = 118/352 (33%), Gaps = 62/352 (17%)
Query: 123 RAKAHAHAPTHSLLSIPGAKTSRSRCSPSP-------------GRSRLARRPLAHLIQAV 169
+AKA A A T + + PG T R SP P + R+PLA +
Sbjct: 7 KAKAGAAARTPAARA-PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65
Query: 170 DFLGGIHDFSATGALGVHDRG--SRGRRRRRLLAPRSRCDIPRR--APHRLLAGGRAAGG 225
G SA A G SR R + R P + +P + + GRA+G
Sbjct: 66 G--GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGT 123
Query: 226 GR-----RVGSRRRATVTRAR------PSRSLAPPPRRRRRAGQTH-----RRARTEVAG 269
R + G R A T AR P RS RR +G T AR A
Sbjct: 124 TRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAA 183
Query: 270 NVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
VG P A P + R+ A+ + P P PS G R
Sbjct: 184 GTEVGLP----RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR--- 236
Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLR 389
SR + P L P + G PS R + A P+PKG + P
Sbjct: 237 ----PASRSLSSSATP--LSSPARSG---PSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287
Query: 390 PR----------GAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLLSPAP 431
PR + P+P+ + A P+ P S + L +P P
Sbjct: 288 PRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLP 339
Score = 29.3 bits (64), Expect = 7.3
Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 17 PSPRSQEALRVGGEV----GSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGSG 72
P P Q+ LR+ E G + G R + G P PS P
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPT-----PGTPS---PAMA 177
Query: 73 AAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPT 132
R A + LP RPAP +P P SV S + +P+ R + A
Sbjct: 178 RRSRAAGTEVGLP---RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG- 233
Query: 133 HSLLSIPGAKTSRSRCSP--SPGRS 155
L P +++ S +P SP RS
Sbjct: 234 ---LQRPASRSLSSSATPLSSPARS 255
Score = 29.3 bits (64), Expect = 7.3
Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 32/156 (20%)
Query: 55 RLAEVPPWVPSLV----------PPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQS 104
+LA+ PP P + PP S + +LPMS P P Q+
Sbjct: 511 QLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMS--------PLATPPPQA 562
Query: 105 PSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTS----RSRCSPSPGRSRLARR 160
P V++ A + PSP A AP PG TS R + +PG R
Sbjct: 563 PPVLA---APLLQVPPSPPASPTLQAPRRP--PTPGPDTSVSGPRLTLALAPGPPPPPSR 617
Query: 161 PLAHLIQAVDFLGGIHDFSATGA---LGVHDRGSRG 193
+ + D G H SAT L +D G G
Sbjct: 618 SPSSTLSGPDLAG--HSSSATSTPEELRGYDSGPEG 651
Score = 28.9 bits (63), Expect = 9.6
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 78 APSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDT-PAGVFVRAPSPRAKAHAHAPTHSLL 136
AP AL R R P P + SP++ + AG V P P A PT
Sbjct: 150 APKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR 206
Query: 137 SIPGAKTSRSRCSPSPGRSR 156
+ + S PSP R
Sbjct: 207 KSVSSASEHSTTEPSPAARR 226
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD--- 329
VG PG +GA G P+ RG + PP +G+P + P LT
Sbjct: 733 VGEPGAKGAMGPAG---PDGHQGPRGEQGLTGMPGIRGPPGPSGDPGK----PGLTGPQG 785
Query: 330 ---VPGTQMSRGVRGQ-GAP---------SLLLQPVKPGT--AAPSPRAEAVSAARSDAP 374
+PGT G++G+ GAP S+L P PG A P A
Sbjct: 786 PQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAG 845
Query: 375 RPKGREI---RGEPGDLRPRGAEGCTAPAPTG 403
P +E+ +G PG PRG G + P P G
Sbjct: 846 LPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPG 877
Score = 33.9 bits (76), Expect = 0.30
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 273 VGHPGREGAAGE-GAGRDP--ESSADRRGCDCAAWGVSLAPPPLQAGEPSRG---HPHPR 326
+GHPG +G G+ G+ DP E +RG + A PP + RG P P
Sbjct: 596 LGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPH 655
Query: 327 -LTDVPGTQMSRGVRG----QGAPSLL-LQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
VPG+ +G G QG P + LQ ++ P + + P PKG +
Sbjct: 656 GPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDK---GPMGPPGPKGDQ 712
Query: 381 -------------IRGEPGDLRPRGAEGCTAPA 400
+RG PG + GA+G PA
Sbjct: 713 GEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPA 745
Score = 31.6 bits (70), Expect = 1.5
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 269 GNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT 328
GN+ G PG +G G P DR G P PL G P P +
Sbjct: 563 GNLR-GSPGPKGDMGS-----PGPKGDR-----GFPGTPGIPGPL--GHPGPQGPKGQKG 609
Query: 329 DV--PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
V PG + G RG+ P + P G A P E + P P G G PG
Sbjct: 610 SVGDPGMEGPMGQRGREGP---MGP--RGEAGPPGSGEKGERGAAGEPGPHGPP--GVPG 662
Query: 387 DLRPRGAEGCTAPAPTG 403
+ P+G+ G +P P G
Sbjct: 663 SVGPKGSSG--SPGPQG 677
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 43.9 bits (102), Expect = 3e-04
Identities = 101/400 (25%), Positives = 139/400 (34%), Gaps = 63/400 (15%)
Query: 55 RLAEVPPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAP------------RQKPFPVPTS 102
+L VPP PS +GAA R S P S R A RQ + TS
Sbjct: 23 KLESVPPPPPSPSAAAAGAAGARG-SETGDPGSPRGAEEPGKKRHERLFHRQDALWISTS 81
Query: 103 QSPSVVSDTPAGVFVRAPSPRAKAHAHAPTH----SLLSIPGAKTSRSRCSPSP---GRS 155
+ + ++ PA +P+P + A +P SL ++P SP P G
Sbjct: 82 SAGTGGAEPPA----LSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAP 137
Query: 156 RLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRL-LAPRSRCDIPRRAPH 214
+RRPL + + + G + A G + G RRL +AP P +
Sbjct: 138 TSSRRPL---LSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKT-- 192
Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVG 274
+ G AGGG+ GSR + +P + G + A T A
Sbjct: 193 -VTTSGAKAGGGKGAGSRLSWPESEGKPR---VKGSKSSAGTGASVSAAATAAAAGGGGS 248
Query: 275 HPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQ 334
G G GAG + S R+G L P P AG P P LT P
Sbjct: 249 TASTSGGVGAGAGARGKLS-PRKGKSKTLDNSDLHPGP-PAGSP------PPLTLPPTPS 300
Query: 335 MSRGVRGQG------APSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG---REIRGEP 385
+ V AP + L+P PG A + R G + G P
Sbjct: 301 PATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKSTGGPP 360
Query: 386 GDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKS 425
G P P L +S S RE+LG+ +R S
Sbjct: 361 G--------SGPLPGPPSL----SSGSGSRELLGAELRAS 388
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,272,963
Number of Sequences: 37866
Number of extensions: 1548362
Number of successful extensions: 11914
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 938
Number of HSP's that attempted gapping in prelim test: 9037
Number of HSP's gapped (non-prelim): 3178
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.