Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169201944

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
         (436 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]           894   0.0  
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]           894   0.0  
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]           894   0.0  
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         61   2e-09
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            55   1e-07
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            55   1e-07
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            55   1e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             52   1e-06
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ...    52   1e-06
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ...    52   1e-06
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            51   2e-06
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            51   2e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            49   9e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    48   2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    48   2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      48   2e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    48   2e-05
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       48   2e-05
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       48   2e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      47   3e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                47   3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      46   6e-05
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               46   6e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          45   1e-04
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        45   1e-04
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ...    45   2e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    45   2e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 44   2e-04
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          44   3e-04

>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score =  894 bits (2310), Expect = 0.0
 Identities = 436/436 (100%), Positives = 436/436 (100%)

Query: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
           MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60

Query: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
           PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120

Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
           SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180

Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
           TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240

Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
           RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300

Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
           CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360

Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
           PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420

Query: 421 WMRKSLLSPAPRPRAF 436
           WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436


>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score =  894 bits (2310), Expect = 0.0
 Identities = 436/436 (100%), Positives = 436/436 (100%)

Query: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
           MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60

Query: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
           PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120

Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
           SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180

Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
           TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240

Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
           RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300

Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
           CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360

Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
           PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420

Query: 421 WMRKSLLSPAPRPRAF 436
           WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436


>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score =  894 bits (2310), Expect = 0.0
 Identities = 436/436 (100%), Positives = 436/436 (100%)

Query: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60
           MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP
Sbjct: 1   MRQRPPHDILITICLSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVP 60

Query: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120
           PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP
Sbjct: 61  PWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAP 120

Query: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180
           SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA
Sbjct: 121 SPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSA 180

Query: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240
           TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA
Sbjct: 181 TGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRA 240

Query: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300
           RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD
Sbjct: 241 RPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCD 300

Query: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360
           CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS
Sbjct: 301 CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS 360

Query: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420
           PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS
Sbjct: 361 PRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGS 420

Query: 421 WMRKSLLSPAPRPRAF 436
           WMRKSLLSPAPRPRAF
Sbjct: 421 WMRKSLLSPAPRPRAF 436


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 79/319 (24%), Positives = 106/319 (33%), Gaps = 65/319 (20%)

Query: 74  AHRRAPSAEALPMSHRPAPRQK------PFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAH 127
           +H R+P       S  PAP +K      P P    + PSV   T     ++ P P     
Sbjct: 196 SHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPE 255

Query: 128 AHAPT---HSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGAL 184
              P+   +S       KT     S S  RSR   R  +H                    
Sbjct: 256 PKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSH-------------------- 295

Query: 185 GVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSR 244
                 +R RRR R    RSR   PRR P                  RRR +  R  P R
Sbjct: 296 ------TRPRRRHR---SRSRSYSPRRRP----------------SPRRRPSPRRRTPPR 330

Query: 245 SLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAW 304
            + PPPR RR      RR R+  + +      G   ++     R P     +R       
Sbjct: 331 RMPPPPRHRRSRSPVRRRRRSSASLS------GSSSSSSSSRSRSPPKKPPKRTSSPPRK 384

Query: 305 GVSLAPPPLQAGEPSRGH-PHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPG-TAAPSPR 362
              L+P    A  P R H P P  T  P T+ S   +           V PG T+    +
Sbjct: 385 TRRLSP---SASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTK 441

Query: 363 AEAVSAARSDAPRPKGREI 381
            +      S +P PK R++
Sbjct: 442 HKGTEKRESPSPAPKPRKV 460



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 103/435 (23%), Positives = 142/435 (32%), Gaps = 73/435 (16%)

Query: 46  GTRVEVEGARLAEVPPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSP 105
           G+      +R    P   P           R +PSA      HRP+P   P P  T  SP
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATP-PPKTRHSP 415

Query: 106 SVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPG------RSRLAR 159
                TP     ++   R    + +P  +   +   K +  R SPSP           + 
Sbjct: 416 -----TPQ----QSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESE 466

Query: 160 RPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGR-----------------RRRRLLAP 202
                 + A D +     +         D GS                    RRRR    
Sbjct: 467 EDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPS 526

Query: 203 RSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARP---SRSLAPPPRRR------ 253
           RS    PR+        GR         +RRR + + A P    R+  PPPRRR      
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPP 586

Query: 254 RRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDC--AAWGVSLAPP 311
           RR   + RR    +        P +   A       P     RR          VS +PP
Sbjct: 587 RRRSPSPRRYSPPIQRRYSPSPPPKRRTA------SPPPPPKRRASPSPPPKRRVSHSPP 640

Query: 312 PLQAGEPSRGHPHPRLTDV--PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAA 369
           P Q   P      P L+     G+  SR  R   +P    QP K  + +P PRA   S++
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSP----QPNKRHSPSPRPRAPQTSSS 696

Query: 370 -------------RSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPRE 416
                        R  +P P  R IR       P+  +   +P+P  + R  +S    R 
Sbjct: 697 PPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSS----RS 752

Query: 417 VLGSWMRKSLLSPAP 431
           V GS    +   PAP
Sbjct: 753 VSGSPEPAAKKPPAP 767


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)

Query: 52  EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
           +G + A+ PP  P+        L+P       R AP+A   P+S     R+ P     S 
Sbjct: 29  DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84

Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
           SP     SV+   +PAG   R P PRA    H+P  ++ +I  G +  R R      R  
Sbjct: 85  SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGS 144

Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
             RR      Q V   L G+      GA      G +G  R  +  P     +P  A  R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199

Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
              GG   GGG       R +  RAR   S  P PRR R  G   R   R  +A +  + 
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254

Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
            P    R  + G GA     ++A                 R GC     G   AP  LQ 
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314

Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
             G     + HP  +  P +      R   A  L  L QP  P   AP P    +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)

Query: 52  EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
           +G + A+ PP  P+        L+P       R AP+A   P+S     R+ P     S 
Sbjct: 29  DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84

Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
           SP     SV+   +PAG   R P PRA    H+P  ++ +I  G +  R R      R  
Sbjct: 85  SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGS 144

Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
             RR      Q V   L G+      GA      G +G  R  +  P     +P  A  R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199

Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
              GG   GGG       R +  RAR   S  P PRR R  G   R   R  +A +  + 
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254

Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
            P    R  + G GA     ++A                 R GC     G   AP  LQ 
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314

Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
             G     + HP  +  P +      R   A  L  L QP  P   AP P    +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 99/357 (27%), Positives = 129/357 (36%), Gaps = 54/357 (15%)

Query: 52  EGARLAEVPPWVPS--------LVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQ 103
           +G + A+ PP  P+        L+P       R AP+A   P+S     R+ P     S 
Sbjct: 29  DGIKRAQPPPHTPATGTRSSYRLLPQKGRGNLRGAPTA---PVSFSRI-RRNPLRTQLSG 84

Query: 104 SP-----SVVS-DTPAGVFVRAPSPRAKAHAHAPTHSLLSI-PGAKTSRSRCSPSPGRSR 156
           SP     SV+   +PAG   R P PRA    H+P  ++ +I  G +  R R      R  
Sbjct: 85  SPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGS 144

Query: 157 LARRPLAHLIQAV-DFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHR 215
             RR      Q V   L G+      GA      G +G  R  +  P     +P  A  R
Sbjct: 145 GKRRGWGLRPQRVRSRLAGL-GAPRGGAAAPRGWGGQGAERLGVHQP----GLPTHAALR 199

Query: 216 LLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR-ARTEVAGNVHVG 274
              GG   GGG       R +  RAR   S  P PRR R  G   R   R  +A +  + 
Sbjct: 200 GGGGGSEGGGGGA-----RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLS 254

Query: 275 HPG---REGAAGEGAGRDPESSA----------------DRRGCDCAAWGVSLAPPPLQ- 314
            P    R  + G GA     ++A                 R GC     G   AP  LQ 
Sbjct: 255 RPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPGGLQD 314

Query: 315 -AGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSL--LLQPVKPGTAAPSPRAEAVSA 368
             G     + HP  +  P +      R   A  L  L QP  P   AP P    +SA
Sbjct: 315 CRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPPKLAPPPLPPWLSA 371


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 60/193 (31%), Positives = 68/193 (35%), Gaps = 51/193 (26%)

Query: 209 PRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVA 268
           PR AP     GGRAAGG  R   RRR    R R SRS A  PRRR R     RR R    
Sbjct: 366 PRSAPSSQGRGGRAAGGAGRRRRRRR----RRRRSRSSASAPRRRGR-----RRPRPA-- 414

Query: 269 GNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT 328
                  P R  +      R    S   RG          AP P       RGH      
Sbjct: 415 -------PPRGSSRSLSRARSSSDSGSGRG----------APGPGPEPGSERGHG----- 452

Query: 329 DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRA-------EAVSAARSDAPRPKGREI 381
                    G R +  P       +P + +PSP A       E  S++RS  P P+    
Sbjct: 453 -------GHGKRAKERP----PRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSS 501

Query: 382 RGEPGDLRPRGAE 394
              P   R R AE
Sbjct: 502 SRSPSKSRSRSAE 514



 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 72/305 (23%), Positives = 99/305 (32%), Gaps = 59/305 (19%)

Query: 89  RPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTSRSRC 148
           RP     P   P+S SP V               R KA A APT           +R + 
Sbjct: 327 RPGSAHSPPDKPSSPSPRV---------------RDKAAAAAPT---------PPARGKE 362

Query: 149 SPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDI 208
           SPSP  +  ++                      G       G R RRRRR    RS    
Sbjct: 363 SPSPRSAPSSQ--------------------GRGGRAAGGAGRRRRRRRRRRRSRSSASA 402

Query: 209 PRRAPHRLLAGGRAAGGGRRVGSRRRATVT-RARPSRSLAPPPRRRRRAGQTHRRARTEV 267
           PRR   R        G  R +   R ++ +   R +    P P   R  G   +RA+   
Sbjct: 403 PRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERP 462

Query: 268 AGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRL 327
                       GA G   G + +SS+   G    +W  S +P   ++    +    P  
Sbjct: 463 PRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSR 522

Query: 328 TDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA-ARSDAPRPKGREIRGEPG 386
           +  P   +SR   G+G              A    AEA  A  RS +  P  +  R  P 
Sbjct: 523 SPSPKKPLSRDKDGEG-------------RARHSEAEATRARRRSRSYSPIRKRRRDSPS 569

Query: 387 DLRPR 391
            + PR
Sbjct: 570 FMEPR 574



 Score = 32.7 bits (73), Expect = 0.66
 Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 30/146 (20%)

Query: 18  SPRSQEALRVGGEVGSRADLWGGG------RGYCGTRVEVEGARLAEVPPWV-PSLVPPG 70
           S RS    R   + GS     G G      RG+ G      G R  E PP   P+   P 
Sbjct: 419 SSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGG-----HGKRAKERPPRARPASTSPS 473

Query: 71  SGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHA 130
            G AH R    E    S  P P  + +   +S+SPS           ++ S  A+   H+
Sbjct: 474 PG-AHGRRGGPEGKSSSRSPGPHPRSW--SSSRSPS-----------KSRSRSAEKRPHS 519

Query: 131 PTHSLLSIPGAKTSRSRCSPSPGRSR 156
           P+ S    P  K   SR     GR+R
Sbjct: 520 PSRS----PSPKKPLSRDKDGEGRAR 541


>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
           sapiens]
          Length = 470

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)

Query: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
           PS  +K     P      IP   G + + +R      ++RL RR    +I          
Sbjct: 21  PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80

Query: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
             GG+   +A GA      G++  RRRRL              APR R  +    PRR P
Sbjct: 81  GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134

Query: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
            RL A      +   G R  S R   R  +  AR  R L P P     RAG T  R R  
Sbjct: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192

Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
           +     +  PG      +  G +  + A  R   CA  G    P P+  G P      PR
Sbjct: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246

Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
             DVP        R  G      +  +PG+ A S RA   S   + A RP   E    PG
Sbjct: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299

Query: 387 DLRP 390
             RP
Sbjct: 300 AARP 303



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
           L P +   IP R P R+  G     G ++  +R  A  ++ R          RRRR G  
Sbjct: 19  LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69

Query: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
               R    G    G  G  GAA  GAG   +    RR          LA P     PLQ
Sbjct: 70  IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114

Query: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
            G   R   H  LT   P  +  R     G P+     ++P +A    R    SA   R 
Sbjct: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172

Query: 372 DAPRPKGREIRGEPGDLRP 390
             P P     R     LRP
Sbjct: 173 LPPAPAAGLWRAGCTRLRP 191


>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
           sapiens]
          Length = 470

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 86/304 (28%), Positives = 110/304 (36%), Gaps = 54/304 (17%)

Query: 120 PSPRAKAHAHAPTHSLLSIP---GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFL---- 172
           PS  +K     P      IP   G + + +R      ++RL RR    +I          
Sbjct: 21  PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGR 80

Query: 173 --GGIHDFSATGALGVHDRGSRGRRRRRLL-------------APRSRCDI----PRRAP 213
             GG+   +A GA      G++  RRRRL              APR R  +    PRR P
Sbjct: 81  GRGGLPGAAALGA------GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRP 134

Query: 214 HRLLAGG---RAAGGGRRVGSRR---RATVTRARPSRSLAPPPRRRR-RAGQTHRRARTE 266
            RL A      +   G R  S R   R  +  AR  R L P P     RAG T  R R  
Sbjct: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT--RLRPL 192

Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
           +     +  PG      +  G +  + A  R   CA  G    P P+  G P      PR
Sbjct: 193 LLQPPPMLSPG----LAQSPGVELHARAHSRAHTCAGGGEG-DPGPIVGGRPEN-EDSPR 246

Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
             DVP        R  G      +  +PG+ A S RA   S   + A RP   E    PG
Sbjct: 247 FPDVP-------TRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPG 299

Query: 387 DLRP 390
             RP
Sbjct: 300 AARP 303



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 200 LAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQT 259
           L P +   IP R P R+  G     G ++  +R  A  ++ R          RRRR G  
Sbjct: 19  LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR---------LRRRRQGAV 69

Query: 260 HRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP-----PLQ 314
               R    G    G  G  GAA  GAG   +    RR          LA P     PLQ
Sbjct: 70  IVGRRRACPGR---GRGGLPGAAALGAG--AQQPRRRR----------LAQPPGSRAPLQ 114

Query: 315 AGEPSRGHPHPRLT-DVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSA--ARS 371
            G   R   H  LT   P  +  R     G P+     ++P +A    R    SA   R 
Sbjct: 115 VGGAPRRRAH--LTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG 172

Query: 372 DAPRPKGREIRGEPGDLRP 390
             P P     R     LRP
Sbjct: 173 LPPAPAAGLWRAGCTRLRP 191


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 94/349 (26%), Positives = 118/349 (33%), Gaps = 67/349 (19%)

Query: 64  PSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPR 123
           PS  PPG G+   R P  +  P       R   F  P     SV S  P+    RAP P 
Sbjct: 176 PSAHPPGRGSG--RVPRGQ--PEQQAWEQRSSHFLAPEG---SVASLLPSAKPARAPRPA 228

Query: 124 AKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLI--QAVDFLGGIH----- 176
            +A   A   S          R        R    + PLA L+   AV     +      
Sbjct: 229 PRAREEAAAGS--------RGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP 280

Query: 177 -----DFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAAGG 225
                  ++   L     GSR        RR R  A RS        P  L  GG   G 
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340

Query: 226 GRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG---R 278
            RR G   R    R +     +PP    P    RAG+     +    G    G PG   R
Sbjct: 341 RRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVSPR 396

Query: 279 EGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQMS 336
           EGA GEG  R   +   R    C    +  +P   Q G P R      PRL+        
Sbjct: 397 EGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS-------- 443

Query: 337 RGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
                  APS   + V  G  A +P  E +S+ R+ AP  +GR+    P
Sbjct: 444 -------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 484



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 112/429 (26%), Positives = 139/429 (32%), Gaps = 120/429 (27%)

Query: 84  LPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAK- 142
           +PM+ R +P    F V TSQS S             PSPR +     P   + + P A+ 
Sbjct: 10  VPMTRRASPVFTGFCVNTSQSESF-----------DPSPRGR---DGPWRHVETFPRARG 55

Query: 143 ----TSRSR-CSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHD--------- 188
               + R+R   P P       R    L +A     G H F    +L  H          
Sbjct: 56  VEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFH-FQPFLSLSPHQERGRSKPSP 114

Query: 189 ------RGSRGR-----------------RRRRLLAPRSRCD------IPRRAPH----- 214
                 RG  G+                  RR L +PR           PR  PH     
Sbjct: 115 PVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFR 174

Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAP--------PPRRRRRAGQTHRRARTE 266
           R  A     G GR    +        R S  LAP        P  +  RA +   RAR E
Sbjct: 175 RPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREE 234

Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLA--PPPLQAGEPSRGHPH 324
            A     G  G E  A  G+ + P   A        +   SLA  PPPLQ          
Sbjct: 235 AAAGSR-GRGGAERPAARGSAQQP-PLARLLLASAVSLAASLARSPPPLQ---------- 282

Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDA----PRPKGRE 380
           PRL      +++  + G  APSL          +P PR     A RS A    P P+   
Sbjct: 283 PRLGSASPPRLAAPLAGSRAPSL----------SPFPRRCRRRAERSPAGHGLPLPRSLS 332

Query: 381 IRGE-PGDLRPRGAE---------GCTAPAPTGLFREDASPSCP-----REVLGSWMRKS 425
             GE  G  R RG E         GC   +P       A P+ P     R     W RK 
Sbjct: 333 RGGEVVGARRRRGGEERRVRGRRQGCALGSPP----IPAGPAAPGRAGERRAARQW-RKR 387

Query: 426 LLSPAPRPR 434
              P   PR
Sbjct: 388 GGGPGVSPR 396


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 94/349 (26%), Positives = 118/349 (33%), Gaps = 67/349 (19%)

Query: 64  PSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPR 123
           PS  PPG G+   R P  +  P       R   F  P     SV S  P+    RAP P 
Sbjct: 176 PSAHPPGRGSG--RVPRGQ--PEQQAWEQRSSHFLAPEG---SVASLLPSAKPARAPRPA 228

Query: 124 AKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLI--QAVDFLGGIH----- 176
            +A   A   S          R        R    + PLA L+   AV     +      
Sbjct: 229 PRAREEAAAGS--------RGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPP 280

Query: 177 -----DFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAAGG 225
                  ++   L     GSR        RR R  A RS        P  L  GG   G 
Sbjct: 281 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 340

Query: 226 GRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG---R 278
            RR G   R    R +     +PP    P    RAG+     +    G    G PG   R
Sbjct: 341 RRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVSPR 396

Query: 279 EGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQMS 336
           EGA GEG  R   +   R    C    +  +P   Q G P R      PRL+        
Sbjct: 397 EGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS-------- 443

Query: 337 RGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
                  APS   + V  G  A +P  E +S+ R+ AP  +GR+    P
Sbjct: 444 -------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 484



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 112/429 (26%), Positives = 139/429 (32%), Gaps = 120/429 (27%)

Query: 84  LPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAK- 142
           +PM+ R +P    F V TSQS S             PSPR +     P   + + P A+ 
Sbjct: 10  VPMTRRASPVFTGFCVNTSQSESF-----------DPSPRGR---DGPWRHVETFPRARG 55

Query: 143 ----TSRSR-CSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHD--------- 188
               + R+R   P P       R    L +A     G H F    +L  H          
Sbjct: 56  VEVASGRTRWTGPQPLVDTPPARRAGELCEAPQTAPGFH-FQPFLSLSPHQERGRSKPSP 114

Query: 189 ------RGSRGR-----------------RRRRLLAPRSRCD------IPRRAPH----- 214
                 RG  G+                  RR L +PR           PR  PH     
Sbjct: 115 PVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFR 174

Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAP--------PPRRRRRAGQTHRRARTE 266
           R  A     G GR    +        R S  LAP        P  +  RA +   RAR E
Sbjct: 175 RPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREE 234

Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLA--PPPLQAGEPSRGHPH 324
            A     G  G E  A  G+ + P   A        +   SLA  PPPLQ          
Sbjct: 235 AAAGSR-GRGGAERPAARGSAQQP-PLARLLLASAVSLAASLARSPPPLQ---------- 282

Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDA----PRPKGRE 380
           PRL      +++  + G  APSL          +P PR     A RS A    P P+   
Sbjct: 283 PRLGSASPPRLAAPLAGSRAPSL----------SPFPRRCRRRAERSPAGHGLPLPRSLS 332

Query: 381 IRGE-PGDLRPRGAE---------GCTAPAPTGLFREDASPSCP-----REVLGSWMRKS 425
             GE  G  R RG E         GC   +P       A P+ P     R     W RK 
Sbjct: 333 RGGEVVGARRRRGGEERRVRGRRQGCALGSPP----IPAGPAAPGRAGERRAARQW-RKR 387

Query: 426 LLSPAPRPR 434
              P   PR
Sbjct: 388 GGGPGVSPR 396


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 94/351 (26%), Positives = 119/351 (33%), Gaps = 64/351 (18%)

Query: 55  RLAEVPPWVPSLVP-PGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPA 113
           RL  VP       P P  GA   R            P PR++  P    + P+  +    
Sbjct: 84  RLGRVPLTFREASPGPAPGAPRARGSCGR------EPGPRRRRAPSSAGKRPAAAA---- 133

Query: 114 GVFVRAPSPRAKAHAHAPTHSLLSIP----GAKTSRSRCSPSPGRSRLARRPLAHLIQAV 169
               RA  PR ++ A     S+ S      G    R  C     R    RRPL       
Sbjct: 134 ----RAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHC-RCHCRRRPLPKPPPLQ 188

Query: 170 DFLGGIHDFSATGALGVHDRGSRGR------RRRRLLAPRSRCDIPRRAPHRLLAGGRAA 223
             LG     ++   L     GSR        RR R  A RS        P  L  GG   
Sbjct: 189 PRLGS----ASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVV 244

Query: 224 GGGRRVGSRRRATVTRARPSRSLAPP----PRRRRRAGQTHRRARTEVAGNVHVGHPG-- 277
           G  RR G   R    R +     +PP    P    RAG+     +    G    G PG  
Sbjct: 245 GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRG----GGPGVS 300

Query: 278 -REGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRG--HPHPRLTDVPGTQ 334
            REGA GEG  R   +   R    C    +  +P   Q G P R      PRL+      
Sbjct: 301 PREGAQGEGV-RGGVTPRARGSSTC----LRPSPATWQGGAPYRAIFAAGPRLS------ 349

Query: 335 MSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
                    APS   + V  G  A +P  E +S+ R+ AP  +GR+    P
Sbjct: 350 ---------APSAEAEEVPGGHTASNPTYEPLSSRRTKAP-SEGRDSPSSP 390


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 46/137 (33%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
           G PG  G +G    R P     + G D        A  P +AGE  RG P P+     PG
Sbjct: 228 GEPGEPGVSGPMGPRGPPGPPGKPGDD------GEAGKPGKAGE--RGPPGPQGARGFPG 279

Query: 333 TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG-REIRGEPGDLRP 390
           T    GV+G +G P   L   K    AP  + E+ S   + +P P G R + GE G   P
Sbjct: 280 TPGLPGVKGHRGYPG--LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 337

Query: 391 RGAEGCTA----PAPTG 403
            GA G       P P G
Sbjct: 338 AGAAGARGNDGQPGPAG 354



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPG 332
           G  G  G AG      P     +RG      GV    PP + G P +RG P        G
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-----GQDG 522

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
               +G  G+  PS        G A P   A        +   P  R + G PGD  P+G
Sbjct: 523 LAGPKGAPGERGPS--------GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQG 573

Query: 393 AEGCTAPAPTGLFREDASPSCP 414
             G     P+G   ED  P  P
Sbjct: 574 KVG-----PSGAPGEDGRPGPP 590



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G  G  G  GE     P  +A  RG D        A PP   G P+ G   P      G 
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQP---GPAGPPGPVG-PAGGPGFPGAPGAKGE 376

Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-----PRAEAVSAARSDAPRPKGREIRGEPGD 387
               G RG +GA     +P  PG+  P+     P  + +  A+  A  P      G PG 
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 436

Query: 388 LRPRGAEGCTAP 399
             P G +G T P
Sbjct: 437 RGPPGPQGATGP 448



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL--QAGEPSRGHPHPRLTDVP 331
            G PG++GA G    R P                 + PP L   AGEP R    P     P
Sbjct: 1002 GEPGKQGAPGASGDRGPPG--------------PVGPPGLTGPAGEPGR-EGSPGADGPP 1046

Query: 332  GTQMSRGVRGQ-------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKG-REIR 382
            G   + GV+G        GAP     P  PG A P+ +      A +  P  P G    R
Sbjct: 1047 GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR 1106

Query: 383  GEPGDLRPRGAEG 395
            G  G   PRG +G
Sbjct: 1107 GIQGPQGPRGDKG 1119



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 40/157 (25%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G  G  GA G+   +  +  A ++G D  A G     P   +G P    P    T V G 
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKG-DAGAPG-----PQGPSGAPGPQGP----TGVTGP 883

Query: 334 QMSRGVRGQ-------------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
           + +RG +G              G P     P  PG   PS + +    AR D+  P GR 
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK-DGPKGARGDSG-PPGRA 941

Query: 381 -------------IRGEPGDLRPRGAEGCTAPAPTGL 404
                         +GEPGD  P GAEG   P P GL
Sbjct: 942 GEPGLQGPAGPPGEKGEPGDDGPSGAEG--PPGPQGL 976



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 18/133 (13%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPG 332
            G PG +G +G      P+  A +RG         +   P Q GE  RG P  P  +  PG
Sbjct: 957  GEPGDDGPSGAEGPPGPQGLAGQRG---------IVGLPGQRGE--RGFPGLPGPSGEPG 1005

Query: 333  TQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
             Q + G  G   P   + P  PG   P+  P  E    A     R     ++G+ G+   
Sbjct: 1006 KQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 1063

Query: 391  RGAEGCTAPAPTG 403
             GA G  AP P G
Sbjct: 1064 VGAPG--APGPPG 1074



 Score = 37.4 bits (85), Expect = 0.027
 Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 24/142 (16%)

Query: 274  GHPGREGAAGEGA--GRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
            G PGREG+ G     GRD  +       +  A G   AP P   G P    P        
Sbjct: 1032 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP--PGSPGPAGP-------T 1082

Query: 332  GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE------- 384
            G Q  RG  G   P   + P  P  A      +     + +A  P  R ++G        
Sbjct: 1083 GKQGDRGEAGAQGP---MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139

Query: 385  --PGDLRPRGAEGCTAPA-PTG 403
              PG   P G +G + PA P+G
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSG 1161



 Score = 36.2 bits (82), Expect = 0.060
 Identities = 41/140 (29%), Positives = 49/140 (35%), Gaps = 30/140 (21%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G PG++G  G      P   A  RG   A         P   G P  G         PG 
Sbjct: 630 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-------GKPGD 682

Query: 334 QMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG----REIRGEPGDL 388
           Q   GV G+ GAP L+            PR E        +P  +G    R + G PG  
Sbjct: 683 Q---GVPGEAGAPGLV-----------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 728

Query: 389 RPRGAEGCTAP----APTGL 404
            P+GA G   P     P GL
Sbjct: 729 GPKGASGPAGPPGAQGPPGL 748



 Score = 35.4 bits (80), Expect = 0.10
 Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVS--LAPPPLQAGEPSRGHPHPR 326
           G PG  GAAG    +        +G + A       G++  + PP        +G   P 
Sbjct: 750 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP- 808

Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
               PG   S G RG         P  P   A  P A+    A+ +      +   G PG
Sbjct: 809 ----PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864

Query: 387 DLRPRGAEGCTAPAPTGL 404
              P GA G     PTG+
Sbjct: 865 PQGPSGAPG--PQGPTGV 880



 Score = 34.3 bits (77), Expect = 0.23
 Identities = 40/151 (26%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 247 APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGV 306
           A PP     AG+   +     +G    G PG  G  GEG     +      G        
Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698

Query: 307 SLAPPPLQAGEP-SRGHPHPR-LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
                P + G P ++G   PR L   PGT   +G  G   P        PG   P P  +
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGP--------PGAQGP-PGLQ 749

Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
            +   R  A     +  RG+ G+  P GA G
Sbjct: 750 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 780


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 46/137 (33%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
           G PG  G +G    R P     + G D        A  P +AGE  RG P P+     PG
Sbjct: 159 GEPGEPGVSGPMGPRGPPGPPGKPGDD------GEAGKPGKAGE--RGPPGPQGARGFPG 210

Query: 333 TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG-REIRGEPGDLRP 390
           T    GV+G +G P   L   K    AP  + E+ S   + +P P G R + GE G   P
Sbjct: 211 TPGLPGVKGHRGYPG--LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 268

Query: 391 RGAEGCTA----PAPTG 403
            GA G       P P G
Sbjct: 269 AGAAGARGNDGQPGPAG 285



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPG 332
           G  G  G AG      P     +RG      GV    PP + G P +RG P        G
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP-----GQDG 453

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
               +G  G+  PS        G A P   A        +   P  R + G PGD  P+G
Sbjct: 454 LAGPKGAPGERGPS--------GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQG 504

Query: 393 AEGCTAPAPTGLFREDASPSCP 414
             G     P+G   ED  P  P
Sbjct: 505 KVG-----PSGAPGEDGRPGPP 521



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G  G  G  GE     P  +A  RG D        A PP   G P+ G   P      G 
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQP---GPAGPPGPVG-PAGGPGFPGAPGAKGE 307

Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-----PRAEAVSAARSDAPRPKGREIRGEPGD 387
               G RG +GA     +P  PG+  P+     P  + +  A+  A  P      G PG 
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 367

Query: 388 LRPRGAEGCTAP 399
             P G +G T P
Sbjct: 368 RGPPGPQGATGP 379



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL--QAGEPSRGHPHPRLTDVP 331
            G PG++GA G    R P                 + PP L   AGEP R    P     P
Sbjct: 933  GEPGKQGAPGASGDRGPPG--------------PVGPPGLTGPAGEPGR-EGSPGADGPP 977

Query: 332  GTQMSRGVRGQ-------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKG-REIR 382
            G   + GV+G        GAP     P  PG A P+ +      A +  P  P G    R
Sbjct: 978  GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGAR 1037

Query: 383  GEPGDLRPRGAEG 395
            G  G   PRG +G
Sbjct: 1038 GIQGPQGPRGDKG 1050



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 40/157 (25%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G  G  GA G+   +  +  A ++G D  A G     P   +G P    P    T V G 
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKG-DAGAPG-----PQGPSGAPGPQGP----TGVTGP 814

Query: 334 QMSRGVRGQ-------------GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
           + +RG +G              G P     P  PG   PS + +    AR D+  P GR 
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK-DGPKGARGDSG-PPGRA 872

Query: 381 -------------IRGEPGDLRPRGAEGCTAPAPTGL 404
                         +GEPGD  P GAEG   P P GL
Sbjct: 873 GEPGLQGPAGPPGEKGEPGDDGPSGAEG--PPGPQGL 907



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 18/133 (13%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPG 332
            G PG +G +G      P+  A +RG         +   P Q GE  RG P  P  +  PG
Sbjct: 888  GEPGDDGPSGAEGPPGPQGLAGQRG---------IVGLPGQRGE--RGFPGLPGPSGEPG 936

Query: 333  TQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
             Q + G  G   P   + P  PG   P+  P  E    A     R     ++G+ G+   
Sbjct: 937  KQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA 994

Query: 391  RGAEGCTAPAPTG 403
             GA G  AP P G
Sbjct: 995  VGAPG--APGPPG 1005



 Score = 37.4 bits (85), Expect = 0.027
 Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 24/142 (16%)

Query: 274  GHPGREGAAGEGA--GRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
            G PGREG+ G     GRD  +       +  A G   AP P   G P    P        
Sbjct: 963  GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP--PGSPGPAGP-------T 1013

Query: 332  GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE------- 384
            G Q  RG  G   P   + P  P  A      +     + +A  P  R ++G        
Sbjct: 1014 GKQGDRGEAGAQGP---MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070

Query: 385  --PGDLRPRGAEGCTAPA-PTG 403
              PG   P G +G + PA P+G
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSG 1092



 Score = 36.2 bits (82), Expect = 0.060
 Identities = 41/140 (29%), Positives = 49/140 (35%), Gaps = 30/140 (21%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G PG++G  G      P   A  RG   A         P   G P  G         PG 
Sbjct: 561 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-------GKPGD 613

Query: 334 QMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG----REIRGEPGDL 388
           Q   GV G+ GAP L+            PR E        +P  +G    R + G PG  
Sbjct: 614 Q---GVPGEAGAPGLV-----------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD 659

Query: 389 RPRGAEGCTAP----APTGL 404
            P+GA G   P     P GL
Sbjct: 660 GPKGASGPAGPPGAQGPPGL 679



 Score = 35.4 bits (80), Expect = 0.10
 Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVS--LAPPPLQAGEPSRGHPHPR 326
           G PG  GAAG    +        +G + A       G++  + PP        +G   P 
Sbjct: 681 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP- 739

Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
               PG   S G RG         P  P   A  P A+    A+ +      +   G PG
Sbjct: 740 ----PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795

Query: 387 DLRPRGAEGCTAPAPTGL 404
              P GA G     PTG+
Sbjct: 796 PQGPSGAPG--PQGPTGV 811



 Score = 34.3 bits (77), Expect = 0.23
 Identities = 40/151 (26%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 247 APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGV 306
           A PP     AG+   +     +G    G PG  G  GEG     +      G        
Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSG--FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 629

Query: 307 SLAPPPLQAGEP-SRGHPHPR-LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
                P + G P ++G   PR L   PGT   +G  G   P        PG   P P  +
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGP--------PGAQGP-PGLQ 680

Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
            +   R  A     +  RG+ G+  P GA G
Sbjct: 681 GMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 711


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 114/415 (27%), Positives = 138/415 (33%), Gaps = 108/415 (26%)

Query: 15   LSPSPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGS-GA 73
            L   P  + A  + G  G R D   G +G  G+  + +G R    P   P   P G+ G 
Sbjct: 726  LQGMPGERGAAGLPGPKGDRGD--AGPKGADGSPGK-DGVRGLTGPIGPPG--PAGAPGD 780

Query: 74   AHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTH 133
                 PS  A P   R AP  +  P P           PAG F   P    +  A     
Sbjct: 781  KGESGPSGPAGPTGARGAPGDRGEPGPPG---------PAG-FAGPPGADGQPGAKGE-- 828

Query: 134  SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRG 193
                 PG   ++    P PG +  A  P           G I +  A GA G   RGS G
Sbjct: 829  -----PGDAGAKGDAGP-PGPAGPAGPP-----------GPIGNVGAPGAKGA--RGSAG 869

Query: 194  RRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--PR 251
                    P      P        A GR    G               PS +  PP  P 
Sbjct: 870  --------PPGATGFPG-------AAGRVGPPG---------------PSGNAGPPGPPG 899

Query: 252  RRRRAGQTHRRARTEVAGNV-------------HVGHPGREGAAGEGAGRDPESSADRRG 298
               + G    R  T  AG                 G PG +G AG      P+  A +RG
Sbjct: 900  PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRG 959

Query: 299  CDCAAWGVSLAPPPLQAGEPSRGHPH-PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTA 357
                     +   P Q GE  RG P  P  +  PG Q   G  G+  P   + P  PG A
Sbjct: 960  ---------VVGLPGQRGE--RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP--PGLA 1006

Query: 358  AP--------SPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCT-APAPTG 403
             P        +P AE  S  R  +P  KG   RGE G   P GA G   AP P G
Sbjct: 1007 GPPGESGREGAPGAEG-SPGRDGSPGAKGD--RGETGPAGPPGAPGAPGAPGPVG 1058



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 47/150 (31%), Positives = 57/150 (38%), Gaps = 19/150 (12%)

Query: 273 VGHPGREGAAGEG--AGR----DPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHP--H 324
           +G PG +GAAGE   AG      P  +    G D  A       P   AGE     P   
Sbjct: 580 MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639

Query: 325 PRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGE 384
           P    +PG     G  G+       Q V     AP P     S AR +   P  R ++G 
Sbjct: 640 PGFQGLPGPAGPPGEAGKPGE----QGVPGDLGAPGP-----SGARGERGFPGERGVQGP 690

Query: 385 PGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
           PG   PRGA G  AP   G   +  +P  P
Sbjct: 691 PGPAGPRGANG--APGNDGAKGDAGAPGAP 718



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 57/182 (31%), Positives = 69/182 (37%), Gaps = 22/182 (12%)

Query: 240  ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
            A+ +R  A PP      G   R      +GN   G PG  G AG+  G+ P       G 
Sbjct: 861  AKGARGSAGPPGATGFPGAAGRVGPPGPSGNA--GPPGPPGPAGKEGGKGPRGETGPAG- 917

Query: 300  DCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVPGTQMSRGVRGQ----GAPSLLLQPVKP 354
                  V    PP  AGE  S G   P     PGT   +G+ GQ    G P    +   P
Sbjct: 918  --RPGEVGPPGPPGPAGEKGSPGADGP--AGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973

Query: 355  GTAAPS--PRAEAVSAARSD--APRPKGRE-IRGEPGDLRPRGAEGCTAPAPTGLFREDA 409
            G   PS  P  +  S A  +   P P G   + G PG+    G EG  AP   G    D 
Sbjct: 974  GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE---SGREG--APGAEGSPGRDG 1028

Query: 410  SP 411
            SP
Sbjct: 1029 SP 1030



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 46/143 (32%), Positives = 57/143 (39%), Gaps = 23/143 (16%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
           G PG  GA+G    R P     + G D        A  P + GE  RG P P+    +PG
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPGKNGDD------GEAGKPGRPGE--RGPPGPQGARGLPG 257

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPS-PRAEAVSAARSDAPRPKG-------REIRGE 384
           T    G++G    S L      G A P+ P+ E  S   + AP   G       R   G 
Sbjct: 258 TAGLPGMKGHRGFSGL--DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGA 315

Query: 385 PGDLRPRGAEGCTA----PAPTG 403
           PG    RG +G T     P PTG
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTG 338



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G PG  GA GE   + P  S   +G      G    P P  A  P+           PG 
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQG----VRGEPGPPGPAGAAGPAGN---------PGA 390

Query: 334 QMSRGVRG-QGAPSLLLQPVKPGTAAPS-------PRAEAVSAARSDAPRPKG-REIRGE 384
               G +G  GAP +   P  PG   PS       P     ++    AP  KG    +GE
Sbjct: 391 DGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE 450

Query: 385 PGDL------RPRGAEGCTA----PAPTGL 404
           PG +       P G EG       P PTGL
Sbjct: 451 PGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR--GHPHPRLTDVP 331
            G PG  G +GE   + P  ++  RG         LA PP ++G          P     P
Sbjct: 971  GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030

Query: 332  GTQMSRGVRG-QGAPSLLLQPVKPGTAAPS----PRAEAVSAARSDAPRPKGREIRGEPG 386
            G +  RG  G  G P     P  PG   P+     R E   A  +    P G   RG  G
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG--ARGPAG 1088

Query: 387  DLRPRGAEGCT 397
               PRG +G T
Sbjct: 1089 PQGPRGDKGET 1099



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 47/152 (30%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----SRGHPHPR-LT 328
           G PG +G +GE     P S  D  G       V +  PP  AGE     +RG P P  L 
Sbjct: 425 GPPGPKGNSGEPGA--PGSKGDT-GAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLP 481

Query: 329 DVPGTQMSRGVRGQGAPSLLLQPVKP----GTAAPS-PRAEAVSAAR-SDAPRPKGREIR 382
             PG +   G RG      +  P  P    G+  P+ P+     A R  +A  P  + + 
Sbjct: 482 GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541

Query: 383 GEPGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
           G PG   P G  G   P P G   +D  P  P
Sbjct: 542 GSPGSPGPDGKTG--PPGPAG---QDGRPGPP 568



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 42/139 (30%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G PG  G AGE   + P  S   +G          A PP +AG+P      P     PG 
Sbjct: 620 GPPGPAGPAGERGEQGPAGSPGFQGLP------GPAGPPGEAGKPGE-QGVPGDLGAPGP 672

Query: 334 QMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGA 393
             +RG RG      +  P  P     +  A     A+ DA  P     +G PG     G 
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732

Query: 394 EGCTA-PAPTGLFREDASP 411
            G    P P G  R DA P
Sbjct: 733 RGAAGLPGPKG-DRGDAGP 750



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 272 HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
           H G  G +GA G+     P+      G + A   +     P + G P  G P P      
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP--GAPGP-----A 319

Query: 332 GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-PKGRE----IRGEPG 386
           G + + G  G   P     P   G A P     AV A     P+ P+G E    +RGEPG
Sbjct: 320 GARGNDGATGAAGP-----PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374

Query: 387 DLRPRGAEG 395
              P GA G
Sbjct: 375 PPGPAGAAG 383



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 15/152 (9%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-----GHPHPRLT 328
           G PG  GAAG       +     +G + A  G++ AP    A  PS      G P P+  
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAP-GIAGAPGFPGARGPSGPQGPGGPPGPKGN 432

Query: 329 D----VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS-PRAEAVSAARSDAPRPKGREIRG 383
                 PG++   G +G+  P  +  P  PG A     R        +  P P G   RG
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGP--PGPAGEEGKRGARGEPGPTGLPGPPGE--RG 488

Query: 384 EPGDLRPRGAEGCTAPAPTGLFREDASPSCPR 415
            PG     GA+G   P      R    P+ P+
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520



 Score = 35.4 bits (80), Expect = 0.10
 Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 22/162 (13%)

Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAG--EPSRGHPHPRLTDV 330
           +G PG  GA G+     P   A   G   A        PP  AG   P      P     
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE 828

Query: 331 PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAV--------------SAARSDAPRP 376
           PG   ++G  G   P+    P  P     +P A+                +A R   P P
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888

Query: 377 KGREIRGEPGDLRPRGAEGCTAP----APTGLFREDASPSCP 414
            G    G PG   P G EG   P     P G   E   P  P
Sbjct: 889 SGN--AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928



 Score = 32.3 bits (72), Expect = 0.87
 Identities = 42/158 (26%), Positives = 54/158 (34%), Gaps = 35/158 (22%)

Query: 277 GREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS----RGHPHPRLT---- 328
           G EG  G+   R P   A   G D       L  PP   G P      G+  P+L+    
Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYD 168

Query: 329 -------DVPGTQMSRGVRG-------------QGAPSLLLQPVKPGTAAP-SPRAEAVS 367
                   VPG     G RG             QG P    +P +PG + P  PR     
Sbjct: 169 EKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG---EPGEPGASGPMGPRGPPGP 225

Query: 368 AARSDAPRPKGREIRGEPGDLRPRGAEGCTA-PAPTGL 404
             ++      G+   G PG+  P G +G    P   GL
Sbjct: 226 PGKNGDDGEAGKP--GRPGERGPPGPQGARGLPGTAGL 261



 Score = 32.3 bits (72), Expect = 0.87
 Identities = 46/145 (31%), Positives = 52/145 (35%), Gaps = 33/145 (22%)

Query: 274  GHPGREGAAG-EGA-GRD--PESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
            G  GREGA G EG+ GRD  P +  DR     A        PP   G P  G P P    
Sbjct: 1010 GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG-------PPGAPGAP--GAPGP---- 1056

Query: 330  VPGTQMSRGVRGQGAPSLLLQPVKP----GTAAPS-PRAEAVSAARSDAPRPKGRE---- 380
              G     G RG+  P+    PV P    G A P  PR +            KG      
Sbjct: 1057 -VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115

Query: 381  ------IRGEPGDLRPRGAEGCTAP 399
                    G PG+  P GA G   P
Sbjct: 1116 LQGPPGPPGSPGEQGPSGASGPAGP 1140


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
          Length = 1124

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 84/347 (24%), Positives = 115/347 (33%), Gaps = 42/347 (12%)

Query: 60   PPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRA 119
            PP  PS  PP        AP  + +P S   +P   P   P  Q+P  ++  P  V    
Sbjct: 683  PPVSPSATPPSQAPPSLAAPPLQ-VPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSP 741

Query: 120  PS-----------PRAKAHAHAPTHSLLSIPGAKTSRSRCSPSPGRS--RLARRPLAHLI 166
            P+           PR      AP   +   P A    S  +  P ++   LA  PL  L 
Sbjct: 742  PASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALP 801

Query: 167  QAVDFLGGIHDFSATGALGVHDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGG 226
                   G   FS + +L +    +   +   +LA      +P   P    A        
Sbjct: 802  SPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAA-PLLQVPPSPP----ASPTLQAPR 856

Query: 227  RRVGSRRRATVTRARPSRSLAP--PPRRRRRAGQT--------HRRARTEVAGNVHVGHP 276
            R        +V+  R + +LAP  PP   R    T        H  + T     +     
Sbjct: 857  RPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDS 916

Query: 277  GREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT--- 333
            G EG    GA   P   A+   C  AAW    APP    G P    P P  T  PG+   
Sbjct: 917  GPEG----GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADG 971

Query: 334  -----QMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR 375
                 +         AP  L     PGT+     A A + A S +P+
Sbjct: 972  LCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 1018



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 87/342 (25%), Positives = 115/342 (33%), Gaps = 72/342 (21%)

Query: 123 RAKAHAHAPTHSLLSIPGAKTSRSRCSPSP-------------GRSRLARRPLAHLIQAV 169
           +AKA A A T +  + PG  T R   SP P                 + R+PLA     +
Sbjct: 7   KAKAGAAARTPAARA-PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65

Query: 170 DFLGGIHDFSATGALGVHDRG--SRGRRRRRLLAPRSRCDIPRR--APHRLLAGGRAAGG 225
              G     SA  A      G  SR    R   + R     P +  +P  + + GRA+G 
Sbjct: 66  G--GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGT 123

Query: 226 GR-----RVGSRRRATVTRAR------PSRSLAPPPRRRRRAGQTH-----RRARTEVAG 269
            R     + G R  A  T AR      P RS      RR  +G T        AR   A 
Sbjct: 124 TRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAA 183

Query: 270 NVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
              VG P         A   P +   R+    A+   +  P P     PS G    R   
Sbjct: 184 GTEVGLP----RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR--- 236

Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLR 389
                 SR +     P  L  P + G   PS R    + A    P+PKG +    P    
Sbjct: 237 ----PASRSLSSSATP--LSSPARSG---PSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287

Query: 390 PRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLLSPAP 431
           P               R+DA+P+     LG      L +P+P
Sbjct: 288 P---------------RKDAAPA-----LGPLSSSPLATPSP 309



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 17  PSPRSQEALRVGGEV----GSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGSG 72
           P P  Q+ LR+  E     G   +         G R +  G       P  PS   P   
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPT-----PGTPS---PAMA 177

Query: 73  AAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPT 132
              R A +   LP   RPAP  +P P       SV S +       +P+ R +  A    
Sbjct: 178 RRSRAAGTEVGLP---RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG- 233

Query: 133 HSLLSIPGAKTSRSRCSP--SPGRS 155
              L  P +++  S  +P  SP RS
Sbjct: 234 ---LQRPASRSLSSSATPLSSPARS 255



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 31/110 (28%), Positives = 36/110 (32%), Gaps = 14/110 (12%)

Query: 307 SLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAV 366
           SLAPPPLQ        PH      P            AP  L  P  P T  P     ++
Sbjct: 540 SLAPPPLQTASAPLTTPHLETPPCP------------APCPLQAPPSPLTTPPPETPSSI 587

Query: 367 SAARSDAPRP-KGREIRGEPG-DLRPRGAEGCTAPAPTGLFREDASPSCP 414
           +     AP       ++G P   L P       AP    L    A PS P
Sbjct: 588 ATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPP 637



 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 78  APSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDT-PAGVFVRAPSPRAKAHAHAPTHSLL 136
           AP   AL    R   R    P P + SP++   +  AG  V  P P   A    PT    
Sbjct: 150 APKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR 206

Query: 137 SIPGAKTSRSRCSPSPGRSR 156
               + +  S   PSP   R
Sbjct: 207 KSVSSASEHSTTEPSPAARR 226


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPH-PRLTDVP 331
           G PG +G  G+     P+     +G D  +    +   P ++G P  +G P  P L  +P
Sbjct: 279 GEPGEQGEKGDAGENGPKGDTGEKG-DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLP 337

Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
           G +   G  G QG P L   P  PGT     R EA          P GR  RGEPG   P
Sbjct: 338 GIKGEPGFIGPQGEPGL---PGLPGTKGE--RGEA---------GPPGRGERGEPGAPGP 383

Query: 391 RGAEG 395
           +G +G
Sbjct: 384 KGKQG 388



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 41/167 (24%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-------RGHPHPR 326
           G PG +G  GE   R P+ S   RG    +       PP Q G+          G+ H  
Sbjct: 379 GAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEA 438

Query: 327 LTDV-----------PGTQMSRGVRG-QGAPSLL-------------------LQPVKPG 355
           L  +           PG Q  +G +G QG+P +                    +   K G
Sbjct: 439 LQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG 498

Query: 356 TAAPS-PRAEAVSAARSDA--PRPKGREIRGEPGDLRPRGAEGCTAP 399
              P  P A  +   + D+  P P+G  I G PG   P G  G   P
Sbjct: 499 IGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGP 545



 Score = 33.5 bits (75), Expect = 0.39
 Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 36/161 (22%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-----QAGEPS-------RG 321
           G PG  G  GE     P     ++G        S+  P +     Q GEP         G
Sbjct: 222 GVPGEPGKPGEQGLMGPLGPPGQKG--------SIGAPGIPGMNGQKGEPGLPGAVGQNG 273

Query: 322 HPHPRLTDVPGTQMSRGVRGQGAPSLLL-QPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
            P P+    PG Q  +G  G+  P     +   PG++A   + E   + R   P  KG  
Sbjct: 274 IPGPK--GEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR---PGQKGEP 328

Query: 381 ----------IRGEPGDLRPRGAEGCTAPAPTGLFREDASP 411
                     I+GEPG + P+G  G      T   R +A P
Sbjct: 329 GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGP 369


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPH-PRLTDVP 331
           G PG +G  G+     P+     +G D  +    +   P ++G P  +G P  P L  +P
Sbjct: 279 GEPGEQGEKGDAGENGPKGDTGEKG-DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLP 337

Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRP 390
           G +   G  G QG P L   P  PGT     R EA          P GR  RGEPG   P
Sbjct: 338 GIKGEPGFIGPQGEPGL---PGLPGTKGE--RGEA---------GPPGRGERGEPGAPGP 383

Query: 391 RGAEG 395
           +G +G
Sbjct: 384 KGKQG 388



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 41/167 (24%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-------RGHPHPR 326
           G PG +G  GE   R P+ S   RG    +       PP Q G+          G+ H  
Sbjct: 379 GAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEA 438

Query: 327 LTDV-----------PGTQMSRGVRG-QGAPSLL-------------------LQPVKPG 355
           L  +           PG Q  +G +G QG+P +                    +   K G
Sbjct: 439 LQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGG 498

Query: 356 TAAPS-PRAEAVSAARSDA--PRPKGREIRGEPGDLRPRGAEGCTAP 399
              P  P A  +   + D+  P P+G  I G PG   P G  G   P
Sbjct: 499 IGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGP 545



 Score = 33.5 bits (75), Expect = 0.39
 Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 36/161 (22%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-----QAGEPS-------RG 321
           G PG  G  GE     P     ++G        S+  P +     Q GEP         G
Sbjct: 222 GVPGEPGKPGEQGLMGPLGPPGQKG--------SIGAPGIPGMNGQKGEPGLPGAVGQNG 273

Query: 322 HPHPRLTDVPGTQMSRGVRGQGAPSLLL-QPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
            P P+    PG Q  +G  G+  P     +   PG++A   + E   + R   P  KG  
Sbjct: 274 IPGPK--GEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR---PGQKGEP 328

Query: 381 ----------IRGEPGDLRPRGAEGCTAPAPTGLFREDASP 411
                     I+GEPG + P+G  G      T   R +A P
Sbjct: 329 GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGP 369


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 53/197 (26%), Positives = 68/197 (34%), Gaps = 31/197 (15%)

Query: 240 ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
           A P     PP     +  Q  R A  EV      GHPG  G  G      P  +    G 
Sbjct: 599 AGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAG- 657

Query: 300 DCAAWGVSLAPPPLQAGEPSRGHPHPR----LTDVPGTQMSRGVRGQ----GAPSLLLQP 351
                  +  PP +Q      G P P+    L  +PG +   G  G+    G P    +P
Sbjct: 658 -------AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP 710

Query: 352 VKPG-TAAPSPRAEAVSAARSDAPRPKGRE----------IRGEPGDLRPRGAEGCTAP- 399
             PG   A  P         S AP P+G            + G+ GD  P G +G   P 
Sbjct: 711 GLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPR 770

Query: 400 APTGLFREDASPSCPRE 416
            P G   ++ SP  P E
Sbjct: 771 GPPG---KNGSPGSPGE 784



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHP-HPRLTDVP 331
           VG PG  G  G+   R  + +A   G             P   G P +G    P L   P
Sbjct: 418 VGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSP 477

Query: 332 GTQMSRGVRG-QGAPSLLLQPVK---PGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGD 387
           G     G +G +GAP +   P     PG     P     S    D   P  R + G PG 
Sbjct: 478 GLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGP--SGPPGDKGSPGSRGLPGFPGP 535

Query: 388 LRPRGAEGCT---APAPTGLFREDASPSCP 414
             P G +G +   +P    L  +D    CP
Sbjct: 536 QGPAGRDGLSSLLSPGDINLLAKDVCNDCP 565



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 39/223 (17%)

Query: 188 DRGSRGR--RRRRLLAPRS---RCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARP 242
           D+G++G   R    + P S   +C +P+   H   A     G   +    R + +  A+ 
Sbjct: 182 DQGAQGACGRGNTSVLPSSVAPQCSMPKGTGHEFSAALGTQGPADQRADARASCILAAKT 241

Query: 243 SRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEG--AGRDPESSADRRGCD 300
           +      P  ++  G+   R    + G      PG  G  GE   AGR  E         
Sbjct: 242 A------PGLKQLNGEPGERGEDGLPGK-----PGLRGEIGEQGLAGRPGEKGEA----- 285

Query: 301 CAAWGVSLAP--PPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAA 358
               G+  AP  P ++  +  +G        +PG +  RG +G+  P+    P  PGT +
Sbjct: 286 ----GLPGAPGFPGVRGEKGDQGEKGE--LGLPGLKGDRGEKGEAGPAG--PPGLPGTTS 337

Query: 359 ---PSPRA---EAVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
              P PR    +     + D   P    ++G PG+L P+G  G
Sbjct: 338 LFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTG 380


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 53/197 (26%), Positives = 68/197 (34%), Gaps = 31/197 (15%)

Query: 240  ARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGC 299
            A P     PP     +  Q  R A  EV      GHPG  G  G      P  +    G 
Sbjct: 1152 AGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAG- 1210

Query: 300  DCAAWGVSLAPPPLQAGEPSRGHPHPR----LTDVPGTQMSRGVRGQ----GAPSLLLQP 351
                   +  PP +Q      G P P+    L  +PG +   G  G+    G P    +P
Sbjct: 1211 -------AAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP 1263

Query: 352  VKPG-TAAPSPRAEAVSAARSDAPRPKGRE----------IRGEPGDLRPRGAEGCTAP- 399
              PG   A  P         S AP P+G            + G+ GD  P G +G   P 
Sbjct: 1264 GLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPR 1323

Query: 400  APTGLFREDASPSCPRE 416
             P G   ++ SP  P E
Sbjct: 1324 GPPG---KNGSPGSPGE 1337



 Score = 37.4 bits (85), Expect = 0.027
 Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 273 VGHPGREGAAGE-GAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDV 330
           VG PG +G  G+ G G   +     +G       + L  PP + G    RG P       
Sbjct: 507 VGAPGPKGEKGDVGIGPFGQGEKGEKG------SLGLPGPPGRDGSKGMRGEPGE--LGE 558

Query: 331 PGTQMSRGVRG-QGAPSLLLQPVKPG-TAAPSPRAEAVSAARSDAPRPKGRE-IRGEPGD 387
           PG     G+RG QG P L   P  PG   AP  + E            +G +   G+PGD
Sbjct: 559 PGLPGEVGMRGPQGPPGL---PGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGD 615

Query: 388 LRPRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLL---SPAPRPR 434
              +G  G +  A     + D  P+ P  V GS +++  L     AP PR
Sbjct: 616 TGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPR 665



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 22/142 (15%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----SRGHPHPR--- 326
           G PG  G  GE   R  +    + G         LA  P + GE     + G P  R   
Sbjct: 759 GPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK 818

Query: 327 -------LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAA---PSPRA---EAVSAARSDA 373
                     +PG +  RG +G+  P+    P  PGT +   P PR    +     + D 
Sbjct: 819 GDQGEKGELGLPGLKGDRGEKGEAGPAG--PPGLPGTTSLFTPHPRMPGEQGPKGEKGDP 876

Query: 374 PRPKGREIRGEPGDLRPRGAEG 395
             P    ++G PG+L P+G  G
Sbjct: 877 GLPGEPGLQGRPGELGPQGPTG 898



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 46/151 (30%), Positives = 56/151 (37%), Gaps = 27/151 (17%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGC--DCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDV 330
            G PG++G  GE      E S    G   D  A G+   P   + GEP  RG P   L   
Sbjct: 943  GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPG--LPGP 1000

Query: 331  PGTQMSRG-VRG--------------QGAPSLLLQPVK---PGTAAPSPRAEAVSAARSD 372
             GT+ + G VRG              +GAP +   P     PG     P     S    D
Sbjct: 1001 LGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGP--SGPPGD 1058

Query: 373  APRPKGREIRGEPGDLRPRGAEGCTAPAPTG 403
               P  R + G PG   P G +G  AP   G
Sbjct: 1059 KGSPGSRGLPGFPGPQGPAGRDG--APGNPG 1087



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
           G PGR+G+ G    R         G            PP   G P R    P L    G 
Sbjct: 539 GPPGRDGSKGM---RGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGA-PGLQGERGE 594

Query: 334 QMSRGVRGQ-------GAPSLLLQPVKPG-TAAPSPRAEAVSAARSDAPRPKGREI---- 381
           + +RG +G+       G P    Q  +PG +    P+ E      +  P   G  +    
Sbjct: 595 KGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEG 654

Query: 382 -RGEPGDLRPRGAEGCTAPAPTG 403
            +GE G   PRG +G  AP P G
Sbjct: 655 LKGEQGAPGPRGHQG--APGPPG 675


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 46/134 (34%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-GHPH----PRLT 328
            G PG +G  GE         +  RG         LA     AGEP R G+P     P   
Sbjct: 969  GSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGT---AGEPGRDGNPGSDGLPGRD 1025

Query: 329  DVPGTQMSRGVRGQ-GAPSLLLQPVKPGTAAPS----PRAEAVSAARSDAPRPKGREIRG 383
              PG +  RG  G  GAP     P  PG   P+     R E+  A  + AP P G   RG
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGS--RG 1083

Query: 384  EPGDLRPRGAEGCT 397
             PG   PRG +G T
Sbjct: 1084 APGPQGPRGDKGET 1097



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 55/190 (28%), Positives = 67/190 (35%), Gaps = 23/190 (12%)

Query: 242 PSRSLAPPPRRRRRAGQTHRRARTEVAGNVHV-GHPGREGAAGEGAGRDPESSADRRGCD 300
           P  + AP P   R  G    R R  + G     G+ G  G+ G+     P  +A   G  
Sbjct: 290 PGENGAPGPMGPR--GAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347

Query: 301 CAAWGVSLAPPPLQAGEPS-RGHPHPR-------LTDVPGTQMSRGVRGQ-------GAP 345
            A   V  A  P   G P  RG P P+           PG   S G +G+       GAP
Sbjct: 348 GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407

Query: 346 SLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEGCT-APAPTGL 404
            L+     PG A     A      R  A  P     +GEPG    RG  G    P   G 
Sbjct: 408 GLMGARGPPGPAG----ANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGE 463

Query: 405 FREDASPSCP 414
             +D SP  P
Sbjct: 464 DGKDGSPGEP 473



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 43/147 (29%), Positives = 53/147 (36%), Gaps = 16/147 (10%)

Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPG 332
           +G PG +G  GE  G   +    + G       +    P  Q G+   G   P L  + G
Sbjct: 734 LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGA-PGLPGIAG 792

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTA----APSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
            + S G RG+  P        PG A    AP    E        AP  KG    G PG  
Sbjct: 793 PRGSPGERGETGP--------PGPAGFPGAPGQNGEPGGKGERGAPGEKGEG--GPPGVA 842

Query: 389 RPRGAEG-CTAPAPTGLFREDASPSCP 414
            P G  G    P P G+  E  SP  P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGP 869



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 43/152 (28%), Positives = 56/152 (36%), Gaps = 13/152 (8%)

Query: 274 GHPGREGAAGEGAG---RDPESSADRRGCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTD 329
           G PG +G AGE        P  +A   G D    G  +   P   G P S G P P    
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP---- 553

Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAA-PSPRA-EAVSAARSDAPRPKGREIRGEPGD 387
            PG+Q   G  G   PS      +PG    P P+  +       +   P G   +G PG 
Sbjct: 554 -PGSQGESGRPGPPGPSG--PRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK 610

Query: 388 LRPRGAEGCTAPAPTGLFREDASPSCPREVLG 419
               G +G   P   G  + D  P  P+ + G
Sbjct: 611 NGETGPQGPPGPTGPGGDKGDTGPPGPQGLQG 642



 Score = 37.4 bits (85), Expect = 0.027
 Identities = 39/132 (29%), Positives = 45/132 (34%), Gaps = 28/132 (21%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR-LTDVPG 332
           G PG +G AG    R P   A   G    A      PP  + G+ + G P P      PG
Sbjct: 669 GAPGGKGDAGAPGERGPPGLAGAPGLRGGA-----GPPGPEGGKGAAGPPGPPGAAGTPG 723

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
            Q   G RG             G  +P P+         D   P G    G PG   PRG
Sbjct: 724 LQGMPGERG-------------GLGSPGPKG--------DKGEPGGPGADGVPGKDGPRG 762

Query: 393 AEG-CTAPAPTG 403
             G    P P G
Sbjct: 763 PTGPIGPPGPAG 774



 Score = 36.2 bits (82), Expect = 0.060
 Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDVPG 332
           G PG  G  GE   +    +    G    A       PP  AG P  RG   P     PG
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP-----PG 702

Query: 333 TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
            +  +G  G   P        PG AA +P  + +   R     P  +  +GEPG     G
Sbjct: 703 PEGGKGAAGPPGP--------PG-AAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADG 753

Query: 393 AEGCTAP-APTG 403
             G   P  PTG
Sbjct: 754 VPGKDGPRGPTG 765



 Score = 35.8 bits (81), Expect = 0.078
 Identities = 43/133 (32%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 274 GHPGREGAAG--EGAGRDPESSADRRGCDCAAWGVS---LAPPPLQAGEPSRGHP----- 323
           G PG  G  G  E     P++ + +        GV+   LA  P  AG P    P     
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSG 189

Query: 324 HPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAP-RPKGREIR 382
           HP     PG Q   G  GQ  PS    P  PG   PS    A     S  P RP  R + 
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPS--GPPGPPGAIGPS--GPAGKDGESGRPGRPGERGLP 245

Query: 383 GEPGDLRPRGAEG 395
           G PG   P G  G
Sbjct: 246 GPPGIKGPAGIPG 258



 Score = 35.8 bits (81), Expect = 0.078
 Identities = 54/215 (25%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 208 IPRRAPHRLLAGGRAAGG-----GRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRR 262
           +P  A  R   G R   G     G +  +  R     A P  +   P R     G   R 
Sbjct: 478 LPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG 537

Query: 263 ARTEVAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGH 322
                 G    G PG  G+ GE     P   +  RG               Q G    G 
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG---------------QPG--VMGF 580

Query: 323 PHPRLTD-VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPS--PRAEAVSAARSDAPRPKGR 379
           P P+  D  PG    RG  G G P     P K G   P   P        + D   P  +
Sbjct: 581 PGPKGNDGAPGKNGERG--GPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ 638

Query: 380 EIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCP 414
            ++G PG   P G  G   P   G   +  +P  P
Sbjct: 639 GLQGLPGTGGPPGENG--KPGEPGPKGDAGAPGAP 671



 Score = 35.8 bits (81), Expect = 0.078
 Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 30/137 (21%)

Query: 272  HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR----L 327
            H G PG  G AG+   R     A   G          AP P  AG  SRG P P+     
Sbjct: 1048 HPGPPGPVGPAGKSGDRGESGPAGPAG----------APGP--AG--SRGAPGPQGPRGD 1093

Query: 328  TDVPGTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR-------PKGR 379
                G + + G++G +G P     P  PG+  P+ +  A+ +     PR       P G+
Sbjct: 1094 KGETGERGAAGIKGHRGFPG---NPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150

Query: 380  E-IRGEPGDLRPRGAEG 395
            +   G PG + P G  G
Sbjct: 1151 DGTSGHPGPIGPPGPRG 1167



 Score = 34.7 bits (78), Expect = 0.17
 Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 20/138 (14%)

Query: 274 GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-QAGEPS-RGHPHPRLTDVP 331
           GH G +G  GE             G      G + AP P+   G P  RG P      +P
Sbjct: 264 GHRGFDGRNGEKGETGAPGLKGENGLP----GENGAPGPMGPRGAPGERGRP-----GLP 314

Query: 332 GTQMSRGVRG-QGAPSLLLQPVKPGTA----APSPRAEAVSAARSDAPRPKGREIRGEPG 386
           G   +RG  G +G+      P  PGTA    +P  + E   A    +    G+  RGEPG
Sbjct: 315 GAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ--RGEPG 372

Query: 387 DLRPRGAEGCTAPAPTGL 404
                GA+G   P P G+
Sbjct: 373 PQGHAGAQG--PPGPPGI 388



 Score = 32.7 bits (73), Expect = 0.66
 Identities = 40/124 (32%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 274  GHPGREGAAGEGAGRDPESSADRR-GCDCAAWGVSLAPPPLQAGEPSR-GHPHPRLTDVP 331
            G PG  G AGE  GRD    +D   G D +  G          G P   GHP P      
Sbjct: 999  GLPGLAGTAGE-PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP--PGPV 1055

Query: 332  GTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPR 391
            G     G RG+  P+           AP P      A    AP P+G   RG+ G+   R
Sbjct: 1056 GPAGKSGDRGESGPA-------GPAGAPGP------AGSRGAPGPQGP--RGDKGETGER 1100

Query: 392  GAEG 395
            GA G
Sbjct: 1101 GAAG 1104



 Score = 32.3 bits (72), Expect = 0.87
 Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT----D 329
            G PG  GA G      P   A + G    +     A  P  AG  SRG P P+       
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG--SRGAPGPQGPRGDKG 1095

Query: 330  VPGTQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
              G + + G++G +G P     P  PG+  P+ +  A+                G PG  
Sbjct: 1096 ETGERGAAGIKGHRGFPG---NPGAPGSPGPAGQQGAI----------------GSPGPA 1136

Query: 389  RPRGAEGCTAP 399
             PRG  G + P
Sbjct: 1137 GPRGPVGPSGP 1147


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 77/295 (26%), Positives = 104/295 (35%), Gaps = 55/295 (18%)

Query: 140 GAKTSRSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRL 199
           G    +   +   G  R A    +  + A+  L  +   +A   LGV     +GR    +
Sbjct: 10  GGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQGR----V 65

Query: 200 LAPRSRCDIPRRA-----------PH--RLLAGGRAAGGGRRVGSRRRATVTRARPSRSL 246
            A     ++ RRA           PH  RLL          ++    +    R  PS  +
Sbjct: 66  AALEEERELLRRAGPPGALDAWAEPHLERLLR--------EKLDGLAKIRTAREAPSECV 117

Query: 247 APP--------PRRRRRAGQTHRRARTEVAGNVHV-GHPGREGAAGEGAGRDPESSADRR 297
            PP        P RR   G   +  R    G + + G PG  G  GE            +
Sbjct: 118 CPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQ 177

Query: 298 GCDCAAWGVSLAPPPLQAGEP-SRGHPHPRLTDVP-GTQMSRGVRGQGAPSLLLQPVKPG 355
           G D AA       PP   G P +RG P     D P G Q   G +G+      + P  P 
Sbjct: 178 GQDGAAG------PPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGP- 230

Query: 356 TAAPSPRAE-AVSAARSD-----APRPKGREIRGEPGDLRPRGAEGCT-APAPTG 403
              P P+ E  V   + D      P P G   +GEPG + PRG  G   AP P G
Sbjct: 231 ---PGPKGEPGVPGKKGDDGTPSQPGPPGP--KGEPGSMGPRGENGVDGAPGPKG 280


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 52/160 (32%), Positives = 64/160 (40%), Gaps = 33/160 (20%)

Query: 274  GHPGREGAAGE-GAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDV-P 331
            G PG +GA GE G+  D     DR        GV    P ++     RG P PR  D  P
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDR--------GV----PGIKG---DRGEPGPRGQDGNP 2152

Query: 332  GTQMSRGVRG-QGAPSLLLQPVKPGTAA----PSPRAEAVSAARSDAPRPKGREIRGEPG 386
            G    RG+ G +G P L      PG       P P      A  +    P G  ++GEPG
Sbjct: 2153 GLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSG--LKGEPG 2210

Query: 387  DLRP--RGAEGCTA-------PAPTGLFREDASPSCPREV 417
            +  P  RG  G T        P P+GL     SP  P +V
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQV 2250



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 25/143 (17%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPS-RGHPHPRLTDVPG 332
            G PGR+GA+G+            RG         L  P    GEP   G P   +  +PG
Sbjct: 2257 GAPGRDGASGKDGD---------RGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPG 2307

Query: 333  TQMSRGVRGQGAPSLLLQP-VKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPR 391
             +  +G  G  A  L+ +P  K     P PR E   A R+           GEPGD    
Sbjct: 2308 AKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRA-----------GEPGDPGED 2356

Query: 392  GAEGCTAPAPTGLFREDASPSCP 414
            G +G  AP P G F+ D     P
Sbjct: 2357 GQKG--APGPKG-FKGDPGVGVP 2376



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPP---PLQAGEPSR-GHPHPR-LT 328
            G PG  G AGE   R P     R G D        + P     +AG+P R G P  R   
Sbjct: 1758 GDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQ 1817

Query: 329  DVPGTQMSRGVRGQ----GAPSLLLQPVKPGTAAPSPR----AEAVSAARSDAPRPKGRE 380
             +PG     G+ G+    G P L  +  +PG      R     ++ ++ R     PKG  
Sbjct: 1818 GLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGE- 1876

Query: 381  IRGEPGDLRPRGAEGCTAPAPTG 403
             RG PG L P+G  G   P P G
Sbjct: 1877 -RGAPGILGPQGPPG--LPGPVG 1896



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEP----------SRGHP 323
            G PG  G  G    + P  SA  +G             P +AG P          S G P
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLP 1331

Query: 324  HPRLTDVPGTQMSRGVRGQ-GAPSLLLQPVKPG----------TAAPSPRAEAVSAARSD 372
             PR    PG +  RG +G+ GAP  ++    PG          +  P PR          
Sbjct: 1332 GPR--GDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRG 1389

Query: 373  APRPKGREIRGEPGDLRPRG----AEGCTAPAPTGLFREDASP 411
             P   G  ++G+ GD   RG     EG  AP   GL     SP
Sbjct: 1390 PPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 46/158 (29%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT 333
            G PG  G A +G   D     +R        G++   P L     S G   P     PG 
Sbjct: 1389 GPPGLPGTAMKG---DKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGP--VGPPGK 1443

Query: 334  QMSRGVRGQGAPSLLLQPVKPGTAA----------------PSPRAEAVSAARSDAPRPK 377
            +  +G    GAP L  QP  PG                   P P  EA        P P 
Sbjct: 1444 KGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPA 1503

Query: 378  GREIRGEPGDLRPRGAEGCTA-PAPTGLFREDASPSCP 414
            G   RG PG     GA+G    P PTG   E   P  P
Sbjct: 1504 GS--RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP 1539



 Score = 38.9 bits (89), Expect = 0.009
 Identities = 45/151 (29%), Positives = 56/151 (37%), Gaps = 29/151 (19%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGC-----DCAAWGVSLAPPPLQAGEPS-------RG 321
            G PGREG  G      P  S    G      D    GV L  P  + GEP         G
Sbjct: 2428 GPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPG 2487

Query: 322  HPHPR-LTDVPGTQMSRGVRG----------QGAPSLLLQPVKPGTAAPS-----PRA-E 364
               PR LT  PG++  RG +G          +G  +++L P  P  A        PR  +
Sbjct: 2488 QEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLD 2547

Query: 365  AVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
                 R D   P  +  +GEPGD    G  G
Sbjct: 2548 GDKGPRGDNGDPGDKGSKGEPGDKGSAGLPG 2578



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 47/152 (30%), Positives = 55/152 (36%), Gaps = 30/152 (19%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAW-----GVSLAPPPL----QAGEPSR---- 320
            G PG  G AGE   R P   A  RG    A      G    P P     + GEP R    
Sbjct: 1483 GFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDP 1542

Query: 321  -------GHPHPRLTDV--PGTQMSRGVRGQGAPSLLLQPVKPGTAA-PSPRAEAVSAAR 370
                     P     DV   G + + GV+G+  P  L+ P  PG    P  R       R
Sbjct: 1543 AVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGR 1602

Query: 371  ------SDAPRPKGREIR-GEPGDLRPRGAEG 395
                  S  P  KG   R G PG + PRG +G
Sbjct: 1603 AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDG 1634



 Score = 36.6 bits (83), Expect = 0.046
 Identities = 49/180 (27%), Positives = 63/180 (35%), Gaps = 36/180 (20%)

Query: 247  APPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRD------PESSADRRGCD 300
            A PP R   AG         V G    G PG+EG  G    R       P+     +G +
Sbjct: 2646 AGPPGRPGLAGHKGEMGEPGVPGQS--GAPGKEGLIGPKGDRGFDGQPGPKGDQGEKG-E 2702

Query: 301  CAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP----GTQMSRGVRGQGAPSLLLQPVKPGT 356
                G+   P P    + S G P P  +  P    G Q  +G RG     ++  P  PG 
Sbjct: 2703 RGTPGIGGFPGP-SGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPG- 2760

Query: 357  AAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEG---CTAPAPTGLFREDASPSC 413
             AP  R E                 +G PG   PRG +G    T     G  R++ S  C
Sbjct: 2761 -APGERGE-----------------QGRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHC 2802



 Score = 33.1 bits (74), Expect = 0.51
 Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 39/163 (23%)

Query: 244  RSLAPPPRRRRRAGQTHRRARTEVAGN-----VHVGHPGREGAAGEGAGRDPESSADRRG 298
            R L  PP  R   G+        + G+     V +G PG  GA G+   R P      +G
Sbjct: 2492 RGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKG 2551

Query: 299  CDCAAWGVSLAPPPLQAGEP----SRGHPHPR-LTDVPGTQMSRGVRG-QGAPSLLLQPV 352
                        P    G+P    S+G P  +    +PG    RG+ G QG P     P 
Sbjct: 2552 ------------PRGDNGDPGDKGSKGEPGDKGSAGLPGL---RGLLGPQGQPGAAGIPG 2596

Query: 353  KPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRGAEG 395
             PG    SP  + V   R +         +G+ G + PRG +G
Sbjct: 2597 DPG----SPGKDGVPGIRGE---------KGDVGFMGPRGLKG 2626



 Score = 32.7 bits (73), Expect = 0.66
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 27/112 (24%)

Query: 311  PPLQAGEPSR-GHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAP--SPRAEAVS 367
            PP   G P R G P P+    PG+  ++G RG   P    +P  PG A    +P A  + 
Sbjct: 1270 PPGDPGLPGRTGAPGPQ--GPPGSATAKGERG--FPGADGRPGSPGRAGNPGTPGAPGLK 1325

Query: 368  AARSDAPRPKGREIRGEPGDLRPRGAEGCTAPAPTGLFREDASPSCPREVLG 419
             +    P P     RG+PG+  PRG +G               P  P +V+G
Sbjct: 1326 GSPG-LPGP-----RGDPGERGPRGPKG--------------EPGAPGQVIG 1357



 Score = 32.7 bits (73), Expect = 0.66
 Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPL-QAGEPSRGHPHPRLTDVPG 332
            G PG+ G+ GE   R P  +   +G           P PL +AGE     P       PG
Sbjct: 1456 GLPGQPGSPGEQGPRGPPGAIGPKGDRGF-------PGPLGEAGEKGERGP-------PG 1501

Query: 333  TQMSRGVRG-QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREI---RGEPGDL 388
               SRG+ G  G P        PG      + E     R   P   G  +   +GE GD+
Sbjct: 1502 PAGSRGLPGVAGRPGAKGPEGPPGPTGR--QGEKGEPGRPGDPAVVGPAVAGPKGEKGDV 1559

Query: 389  RPRGAEGCT 397
             P G  G T
Sbjct: 1560 GPAGPRGAT 1568


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 52/179 (29%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 210 RRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP---PRRRRRAGQTHRRARTE 266
           R+ PH+   GG    G  R  SR   T T A P+RS  PP   PR      Q+   A   
Sbjct: 3   RKRPHQQGGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGA 62

Query: 267 VAGNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPR 326
           V       HP R    GE         A  RG    +    L+  PL+ G   RG P   
Sbjct: 63  VPSPPAAAHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRP--- 119

Query: 327 LTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEP 385
                      G      PS  L P  PG       A A   A   A    GR  R  P
Sbjct: 120 -----------GKGPPPNPSRRLPPAPPGGRRTWLSALATGPAAGGA----GRRRRSPP 163


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 46/173 (26%), Positives = 62/173 (35%), Gaps = 26/173 (15%)

Query: 250 PRRRRRAGQTHRRARTEVAGNVH----VGHPGREGAAGEGAGRDPESSADRRGCDCAAWG 305
           P ++ +AG+   + +   AGN       G  GR G +GE   + P      +G  C A  
Sbjct: 669 PGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACP 728

Query: 306 VSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEA 365
                    AG P +          PG +  +G  G G P    QP  PG   P P  + 
Sbjct: 729 SLQGTVTDMAGRPGQ----------PGPKGEQGPEGVGRPGKPGQPGLPGVQGP-PGLKG 777

Query: 366 VSAARSDAPRPKGREIRGEPGDLRPRGAEGCTA-------PAPTGLFREDASP 411
           V       P P GR ++G  G+    G  G          P PTG      SP
Sbjct: 778 VQG----EPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSP 826



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGC--DCAAWGVSLAP-PPLQAGEPS-RGHPHPRLTD 329
            GHPG  G  G+     P  S  R G   +  A G    P PP   G P   G P P    
Sbjct: 1249 GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGIS 1308

Query: 330  VPGTQMSRGVRGQ-GAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
              G +  RG  G+ G   L  QP  PG   P        AA  + P P  +   G PG  
Sbjct: 1309 AVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGP-PGKQGFYGPPGPK 1367

Query: 389  RPRGAEG 395
               GA G
Sbjct: 1368 GDPGAAG 1374



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 274  GHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSR-GHPHPRLTDVPG 332
            G PG  G AG    R P+ ++  +G            PP   G P + G P P     PG
Sbjct: 1126 GLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGP-----PG 1180

Query: 333  TQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLRPRG 392
             Q  +G  G   PS L  P  PG   P P  +  +       +     +RG+PG   P G
Sbjct: 1181 PQAEKGSEGIRGPSGL--PGSPGPPGP-PGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPG 1237

Query: 393  AEGCTAPAPTGLFREDASPSCP 414
              G     P G   +   P  P
Sbjct: 1238 LMG-----PPGFKGKTGHPGLP 1254



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 56/192 (29%), Positives = 71/192 (36%), Gaps = 44/192 (22%)

Query: 265 TEVAGNVHVGHPGREGAAG-EGAGRDPESSADRRGCDCAAWGVSLAPPPLQA-----GEP 318
           T++AG    G PG +G  G EG GR  +             GV   PP L+      G P
Sbjct: 735 TDMAGRP--GQPGPKGEQGPEGVGRPGKPGQP------GLPGVQ-GPPGLKGVQGEPGPP 785

Query: 319 SRG----HPHPRLTDVPGTQMSRGVRG----------QGAPSLLLQPVKPGTAAPSPRAE 364
            RG       P    +PG Q   G RG          QG+P      VK  T    P   
Sbjct: 786 GRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPG-----VKGATGPVGPPGA 840

Query: 365 AVSAARSDAPRPKGREIRGEPGDLRPRGAEG----CTAPAPTGLFREDASPSCPREVLGS 420
           +VS       +     +RG PG+  PRG +G    C+ P+   L      P  P    G 
Sbjct: 841 SVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLI-FSGMPGAP----GL 895

Query: 421 WMRKSLLSPAPR 432
           WM  S   P P+
Sbjct: 896 WMGSS-WQPGPQ 906



 Score = 36.2 bits (82), Expect = 0.060
 Identities = 42/138 (30%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 272  HVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVP 331
            HVG PG  G  G        S+   +G   A     LA  P Q G P  GHP P     P
Sbjct: 1292 HVGPPGPPGQPGPAG----ISAVGLKGDRGATGERGLAGLPGQPGPP--GHPGP--PGEP 1343

Query: 332  GTQMSRGVRGQGAPSLLLQPVKP--GTAAPSPRAEAVSAARSDAPRPKGREIR----GEP 385
            GT  + G  G         P  P     A   + +A    R+  P   G+       G P
Sbjct: 1344 GTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPP 1403

Query: 386  GDLRPRGAEGCTAPAPTG 403
            G    RG  G  AP P+G
Sbjct: 1404 GPAGERGHPG--APGPSG 1419



 Score = 33.9 bits (76), Expect = 0.30
 Identities = 38/136 (27%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 273  VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPG 332
            VG PG  G  G    R  E     RG       +     P   G P           +PG
Sbjct: 1017 VGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPG----------LPG 1066

Query: 333  TQMSRGVRG----QGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDL 388
             Q  RG+ G    +G P    QP  PG   P P    +   R            GE G+ 
Sbjct: 1067 LQGERGLTGLTGDKGEPGPPGQPGYPGATGP-PGLPGIKGERGYTGSA------GEKGEP 1119

Query: 389  RPRGAEGCTA-PAPTG 403
             P G+EG    P P G
Sbjct: 1120 GPPGSEGLPGPPGPAG 1135


>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
           sapiens]
          Length = 609

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 101/369 (27%), Positives = 125/369 (33%), Gaps = 80/369 (21%)

Query: 89  RPAPRQKPFPVPT----SQSPSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTS 144
           R  PR    P  T    +  P V+   PA       +P A         SL   PGA   
Sbjct: 193 RTMPRDTGQPTRTMLWDTGQPCVLPQGPA------VTPPAFPGVQETLPSLPVAPGAPGQ 246

Query: 145 RSRCSPSPGRSRLARRPLAHLIQAVDFLGGIHDFSATG----------------ALGV-- 186
           R R SP   R R  R+ L HL    D L G HD    G                +LG+  
Sbjct: 247 RGRPSPYSLRVRGPRQDLPHL----DGLHGAHDHHGLGHASAQAAQQPTRAVQPSLGIPH 302

Query: 187 -------HDRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTR 239
                  H +   GRR R  L PR R   PR    R +   ++ GGG   G    A    
Sbjct: 303 VVAEELEHSKPGGGRRSRE-LRPRYR---PRTPWLRTVCRTQSPGGGG--GQDPTALGAA 356

Query: 240 ARPSRSLAPPPRRRRRAGQTH----RRARTEVAGNVHVGHPGREG-----AAGEGAGRDP 290
           A  +R    PPRRR     T     RR R  V   + +   G EG     A  + A RD 
Sbjct: 357 ALGTR----PPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACRDR 412

Query: 291 ESSADRRGCDCAAW-----GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAP 345
           E + +      A       G+  A PP Q     R  PH  +        ++GV      
Sbjct: 413 EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472

Query: 346 SLLLQPVKPG------TAAPSPRAEAVSAARSDAPRPK----GREIR---GEPGDLRPRG 392
           S    P  PG      +  P P A+  S A    P P     GR +R   G P  +   G
Sbjct: 473 S----PSAPGGDQDRVSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSG 528

Query: 393 AEGCTAPAP 401
             G     P
Sbjct: 529 RRGGAKAQP 537


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 80/335 (23%), Positives = 105/335 (31%), Gaps = 62/335 (18%)

Query: 60  PPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRA 119
           PP  PS  PP        AP  + +P S   +P   P   P  Q+P  ++  P  +  + 
Sbjct: 458 PPVSPSATPPSQAPPSLAAPPLQ-VPPSPPASPPMSPSATPPPQAPPPLAAPPLQL-AKP 515

Query: 120 PSPRAKAHAHAPTHSLLSIPGAKTSRSRCSPS---PGRSRLARRPLAHLIQAVDFLGGIH 176
           P     A A  P  +L S P +   ++  SPS   P        P A  + A   L    
Sbjct: 516 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 575

Query: 177 DFSATGALGVH--------DRGSRGRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRR 228
              A+  L           D    G R    LAP      P R+P   L+G   AG    
Sbjct: 576 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP-PSRSPSSTLSGPDLAG---- 630

Query: 229 VGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVGHPGREGAAGEGAGR 288
                                          H  + T     +     G EG    GA  
Sbjct: 631 -------------------------------HSSSATSTPEELRGYDSGPEG----GAAA 655

Query: 289 DPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGT--------QMSRGVR 340
            P   A+   C  AAW    APP    G P    P P  T  PG+        +      
Sbjct: 656 SPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATG-PGSADGLCTIYETEGPES 714

Query: 341 GQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPR 375
              AP  L     PGT+     A A + A S +P+
Sbjct: 715 ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 749



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 88/352 (25%), Positives = 118/352 (33%), Gaps = 62/352 (17%)

Query: 123 RAKAHAHAPTHSLLSIPGAKTSRSRCSPSP-------------GRSRLARRPLAHLIQAV 169
           +AKA A A T +  + PG  T R   SP P                 + R+PLA     +
Sbjct: 7   KAKAGAAARTPAARA-PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65

Query: 170 DFLGGIHDFSATGALGVHDRG--SRGRRRRRLLAPRSRCDIPRR--APHRLLAGGRAAGG 225
              G     SA  A      G  SR    R   + R     P +  +P  + + GRA+G 
Sbjct: 66  G--GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGT 123

Query: 226 GR-----RVGSRRRATVTRAR------PSRSLAPPPRRRRRAGQTH-----RRARTEVAG 269
            R     + G R  A  T AR      P RS      RR  +G T        AR   A 
Sbjct: 124 TRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAA 183

Query: 270 NVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD 329
              VG P         A   P +   R+    A+   +  P P     PS G    R   
Sbjct: 184 GTEVGLP----RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR--- 236

Query: 330 VPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPGDLR 389
                 SR +     P  L  P + G   PS R    + A    P+PKG +    P    
Sbjct: 237 ----PASRSLSSSATP--LSSPARSG---PSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287

Query: 390 PR----------GAEGCTAPAPTGLFREDASPSCPREVLGSWMRKSLLSPAP 431
           PR           +     P+P+   +  A P+ P     S +   L +P P
Sbjct: 288 PRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLP 339



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 17  PSPRSQEALRVGGEV----GSRADLWGGGRGYCGTRVEVEGARLAEVPPWVPSLVPPGSG 72
           P P  Q+ LR+  E     G   +         G R +  G       P  PS   P   
Sbjct: 126 PGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPT-----PGTPS---PAMA 177

Query: 73  AAHRRAPSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDTPAGVFVRAPSPRAKAHAHAPT 132
              R A +   LP   RPAP  +P P       SV S +       +P+ R +  A    
Sbjct: 178 RRSRAAGTEVGLP---RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG- 233

Query: 133 HSLLSIPGAKTSRSRCSP--SPGRS 155
              L  P +++  S  +P  SP RS
Sbjct: 234 ---LQRPASRSLSSSATPLSSPARS 255



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 42/156 (26%), Positives = 56/156 (35%), Gaps = 32/156 (20%)

Query: 55  RLAEVPPWVPSLV----------PPGSGAAHRRAPSAEALPMSHRPAPRQKPFPVPTSQS 104
           +LA+ PP  P  +          PP S         + +LPMS        P   P  Q+
Sbjct: 511 QLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMS--------PLATPPPQA 562

Query: 105 PSVVSDTPAGVFVRAPSPRAKAHAHAPTHSLLSIPGAKTS----RSRCSPSPGRSRLARR 160
           P V++   A +    PSP A     AP       PG  TS    R   + +PG      R
Sbjct: 563 PPVLA---APLLQVPPSPPASPTLQAPRRP--PTPGPDTSVSGPRLTLALAPGPPPPPSR 617

Query: 161 PLAHLIQAVDFLGGIHDFSATGA---LGVHDRGSRG 193
             +  +   D  G  H  SAT     L  +D G  G
Sbjct: 618 SPSSTLSGPDLAG--HSSSATSTPEELRGYDSGPEG 651



 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 78  APSAEALPMSHRPAPRQKPFPVPTSQSPSVVSDT-PAGVFVRAPSPRAKAHAHAPTHSLL 136
           AP   AL    R   R    P P + SP++   +  AG  V  P P   A    PT    
Sbjct: 150 APKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR 206

Query: 137 SIPGAKTSRSRCSPSPGRSR 156
               + +  S   PSP   R
Sbjct: 207 KSVSSASEHSTTEPSPAARR 226


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 28/152 (18%)

Query: 273 VGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTD--- 329
           VG PG +GA G      P+     RG         +  PP  +G+P +    P LT    
Sbjct: 733 VGEPGAKGAMGPAG---PDGHQGPRGEQGLTGMPGIRGPPGPSGDPGK----PGLTGPQG 785

Query: 330 ---VPGTQMSRGVRGQ-GAP---------SLLLQPVKPGT--AAPSPRAEAVSAARSDAP 374
              +PGT    G++G+ GAP         S+L  P  PG   A   P           A 
Sbjct: 786 PQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAG 845

Query: 375 RPKGREI---RGEPGDLRPRGAEGCTAPAPTG 403
            P  +E+   +G PG   PRG  G + P P G
Sbjct: 846 LPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPG 877



 Score = 33.9 bits (76), Expect = 0.30
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 28/153 (18%)

Query: 273 VGHPGREGAAGE-GAGRDP--ESSADRRGCDCAAWGVSLAPPPLQAGEPSRG---HPHPR 326
           +GHPG +G  G+ G+  DP  E    +RG +        A PP    +  RG    P P 
Sbjct: 596 LGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPH 655

Query: 327 -LTDVPGTQMSRGVRG----QGAPSLL-LQPVKPGTAAPSPRAEAVSAARSDAPRPKGRE 380
               VPG+   +G  G    QG P  + LQ ++     P  + +         P PKG +
Sbjct: 656 GPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDK---GPMGPPGPKGDQ 712

Query: 381 -------------IRGEPGDLRPRGAEGCTAPA 400
                        +RG PG +   GA+G   PA
Sbjct: 713 GEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPA 745



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 269 GNVHVGHPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLT 328
           GN+  G PG +G  G      P    DR        G    P PL  G P    P  +  
Sbjct: 563 GNLR-GSPGPKGDMGS-----PGPKGDR-----GFPGTPGIPGPL--GHPGPQGPKGQKG 609

Query: 329 DV--PGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKGREIRGEPG 386
            V  PG +   G RG+  P   + P   G A P    E      +  P P G    G PG
Sbjct: 610 SVGDPGMEGPMGQRGREGP---MGP--RGEAGPPGSGEKGERGAAGEPGPHGPP--GVPG 662

Query: 387 DLRPRGAEGCTAPAPTG 403
            + P+G+ G  +P P G
Sbjct: 663 SVGPKGSSG--SPGPQG 677


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 101/400 (25%), Positives = 139/400 (34%), Gaps = 63/400 (15%)

Query: 55  RLAEVPPWVPSLVPPGSGAAHRRAPSAEALPMSHRPAP------------RQKPFPVPTS 102
           +L  VPP  PS     +GAA  R  S    P S R A             RQ    + TS
Sbjct: 23  KLESVPPPPPSPSAAAAGAAGARG-SETGDPGSPRGAEEPGKKRHERLFHRQDALWISTS 81

Query: 103 QSPSVVSDTPAGVFVRAPSPRAKAHAHAPTH----SLLSIPGAKTSRSRCSPSP---GRS 155
            + +  ++ PA     +P+P + A   +P      SL ++P         SP P   G  
Sbjct: 82  SAGTGGAEPPA----LSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAP 137

Query: 156 RLARRPLAHLIQAVDFLGGIHDFSATGALGVHDRGSRGRRRRRL-LAPRSRCDIPRRAPH 214
             +RRPL   + +  + G   +  A G +        G   RRL +AP      P +   
Sbjct: 138 TSSRRPL---LSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKT-- 192

Query: 215 RLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPPPRRRRRAGQTHRRARTEVAGNVHVG 274
            +   G  AGGG+  GSR     +  +P        +     G +   A T  A      
Sbjct: 193 -VTTSGAKAGGGKGAGSRLSWPESEGKPR---VKGSKSSAGTGASVSAAATAAAAGGGGS 248

Query: 275 HPGREGAAGEGAGRDPESSADRRGCDCAAWGVSLAPPPLQAGEPSRGHPHPRLTDVPGTQ 334
                G  G GAG   + S  R+G         L P P  AG P      P LT  P   
Sbjct: 249 TASTSGGVGAGAGARGKLS-PRKGKSKTLDNSDLHPGP-PAGSP------PPLTLPPTPS 300

Query: 335 MSRGVRGQG------APSLLLQPVKPGTAAPSPRAEAVSAARSDAPRPKG---REIRGEP 385
            +  V          AP + L+P  PG         A +  R       G   +   G P
Sbjct: 301 PATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKSTGGPP 360

Query: 386 GDLRPRGAEGCTAPAPTGLFREDASPSCPREVLGSWMRKS 425
           G            P P  L    +S S  RE+LG+ +R S
Sbjct: 361 G--------SGPLPGPPSL----SSGSGSRELLGAELRAS 388


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,272,963
Number of Sequences: 37866
Number of extensions: 1548362
Number of successful extensions: 11914
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 938
Number of HSP's that attempted gapping in prelim test: 9037
Number of HSP's gapped (non-prelim): 3178
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press