Search of human proteins with 11095447

Search of human proteins with 11095447

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11095447 major histocompatibility complex, class II, DQ
alpha 2 [Homo sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11095447 major histocompatibility complex, class II, DQ alpha...   519   e-147
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    463   e-131
gi|18426975 major histocompatibility complex, class II, DQ alpha...   463   e-131
gi|113430811 PREDICTED: similar to major histocompatibility comp...   462   e-131
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   461   e-130
gi|169217612 PREDICTED: similar to major histocompatibility comp...   459   e-129
gi|239740747 PREDICTED: similar to major histocompatibility comp...   459   e-129
gi|239740697 PREDICTED: similar to major histocompatibility comp...   459   e-129
gi|239740861 PREDICTED: similar to major histocompatibility comp...   445   e-125
gi|239513953 PREDICTED: similar to major histocompatibility comp...   445   e-125
gi|24797074 major histocompatibility complex, class II, DP alpha...   289   1e-78
gi|4504401 major histocompatibility complex, class II, DO alpha ...   281   3e-76
gi|169218140 PREDICTED: similar to major histocompatibility comp...   279   1e-75
gi|52426774 major histocompatibility complex, class II, DR alpha...   271   5e-73
gi|239752547 PREDICTED: similar to major histocompatibility comp...   208   4e-54
gi|18765715 major histocompatibility complex, class II, DM alpha...   100   2e-21
gi|18641375 major histocompatibility complex, class II, DR beta ...    70   2e-12
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    70   2e-12
gi|52630344 major histocompatibility complex, class II, DR beta ...    69   3e-12
gi|239758095 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239758090 PREDICTED: major histocompatibility complex, class ...    69   3e-12
gi|239740855 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239740853 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239740749 PREDICTED: similar to major histocompatibility comp...    69   3e-12
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...    69   4e-12

>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  519 bits (1336), Expect = e-147
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
           FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 241 QGLRSVGASRHQGLL 255
           QGLRSVGASRHQGLL
Sbjct: 241 QGLRSVGASRHQGLL 255


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  463 bits (1192), Expect = e-131
 Identities = 226/255 (88%), Positives = 239/255 (93%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVWQLP+F +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  463 bits (1191), Expect = e-131
 Identities = 228/255 (89%), Positives = 236/255 (92%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKALLLGALALT VMSPCGGEDIVADHVAS GVN YQ +GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KET W+ P FSKF  FDPQ ALRNMAV KH L  M+++ NSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVGLMGIVVGTVFII
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 241 QGLRSVGASRHQGLL 255
           QGLRSVGASRHQG L
Sbjct: 241 QGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  462 bits (1190), Expect = e-131
 Identities = 226/255 (88%), Positives = 239/255 (93%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVWQLP+F +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  461 bits (1186), Expect = e-130
 Identities = 225/255 (88%), Positives = 238/255 (93%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVWQLP+F +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 241 RGLRSVGASRHQGPL 255


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  459 bits (1180), Expect = e-129
 Identities = 225/255 (88%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQ+THEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVW+LP+F + + FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHR-LRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  459 bits (1180), Expect = e-129
 Identities = 225/255 (88%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQ+THEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVW+LP+F + + FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHR-LRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  459 bits (1180), Expect = e-129
 Identities = 225/255 (88%), Positives = 240/255 (94%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQ+THEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DLE KETVW+LP+F + + FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLERKETVWKLPLFHR-LRFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTV II
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  445 bits (1144), Expect = e-125
 Identities = 220/255 (86%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DL  KETVW LP+  +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTVFII
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  445 bits (1144), Expect = e-125
 Identities = 220/255 (86%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DL  KETVW LP+  +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTVFII
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLRSVGASRHQG L
Sbjct: 240 RGLRSVGASRHQGPL 254


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  289 bits (740), Expect = 1e-78
 Identities = 141/251 (56%), Positives = 184/251 (73%), Gaps = 1/251 (0%)

Query: 5   KALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYVDLET 64
           +A++L AL+L  ++S  G   I ADHV++Y   F Q+H P+G++  EFD DE FYVDL+ 
Sbjct: 11  RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69

Query: 65  KETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSKFPVT 124
           KETVW L  F +  SF+ Q  L N+A+  + L  ++++SN T ATN+ PEVTVF K PV 
Sbjct: 70  KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129

Query: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSAD 184
           LGQPNTLIC +D  FPPV+N+TWL NG  VTEGV+E+ FL ++D+SF K  YLTF+PSA+
Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189

Query: 185 EIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFIIQGLR 244
           + YDC+VEHWGLD+PLLKHWE + P  M E TET++CALGL +GL+GI+VGTV II+ LR
Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249

Query: 245 SVGASRHQGLL 255
           S    R QG L
Sbjct: 250 SGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  281 bits (720), Expect = 3e-76
 Identities = 135/242 (55%), Positives = 170/242 (70%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           M L   L+LG   L  ++SP       ADH+ SYG  FYQS+G SGQ+THEFD ++ F V
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DL+  E VW+LP F  F  FDPQ  L  +A  K  L+ ++ +SN + A N  P VTV  K
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
             V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ETLVCALGL++GL+G +VGTV II
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 241 QG 242
            G
Sbjct: 241 MG 242


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  279 bits (714), Expect = 1e-75
 Identities = 136/147 (92%), Positives = 141/147 (95%)

Query: 109 TNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168
           T EVPEVTVFSK PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66

Query: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVG 228
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVG
Sbjct: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126

Query: 229 LMGIVVGTVFIIQGLRSVGASRHQGLL 255
           L+GIVVGTVFII+GLRSVGASRHQG L
Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  271 bits (692), Expect = 5e-73
 Identities = 133/255 (52%), Positives = 172/255 (67%), Gaps = 1/255 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           M ++   +LG   +  +MS      I  +HV      FY +   SG++  +FDGDE F+V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQA-EFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           D+  KETVW+L  F +F SF+ Q AL N+AV K  LE M ++SN T  TN  PEVTV + 
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
            PV L +PN LIC +D   PPVVN+TWL NG  VT GVSET FL + DH F K  YL FL
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240
           PS +++YDC+VEHWGLDEPLLKHWE + P+P+ E TE +VCALGL+VGL+GI++GT+FII
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 241 QGLRSVGASRHQGLL 255
           +GLR   A+  +G L
Sbjct: 240 KGLRKSNAAERRGPL 254


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  208 bits (529), Expect = 4e-54
 Identities = 104/131 (79%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
           MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQYTHEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
           DL  KETVW LP+  +F  FDPQ AL N+AV KH L  ++++SNSTAATNEVPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 FPVTLGQPNTL 131
            PVTLGQPN L
Sbjct: 120 SPVTLGQPNIL 130


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score =  100 bits (248), Expect = 2e-21
 Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 38  FYQSHGPSGQYTHEFDGDEEFYVDLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLE 97
           + Q   PS   +  +D D+ F+ D      V +LP F+ +     Q     +   K   E
Sbjct: 49  YCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQ--EQGDAPAILFDKEFCE 106

Query: 98  FMMRQ-----SNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152
           +M++Q           +   P   VF+  P+  G+PNTL+C V N+FPP++ + W    H
Sbjct: 107 WMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHH 164

Query: 153 SV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAP 211
           SV  EG   T   +    SF   SYL F P   +I+ C V H       + +W P    P
Sbjct: 165 SVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP 224

Query: 212 MSELTETLVCALGLSVGLMGIVVGTVFII 240
            S+L E ++C +   +G++GI+VG V II
Sbjct: 225 -SDLLENVLCGVAFGLGVLGIIVGIVLII 252


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+     TL   N L+C V+  +P  + + W  N      GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 222

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 223 VLGLLFLGAGL 233


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           PEVTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGTGL 246


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 13/153 (8%)

Query: 91  VGKHTLEFMMRQSNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +H  +  +R   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPA 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETLVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 247

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 248 VLGLLFLGTGL 258


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 127 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 186

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 236

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 237 VLGLLFLGAGL 247


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 13/153 (8%)

Query: 91  VGKHTLEFMMRQSNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSN 150
           V +H  +  +R   +T      P VT+       L   N L+C V + +P  + + W  N
Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166

Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPA 210
           G   T GV  T  +   D +F  +  L   P   ++Y C VEH  L  P+   W  +  +
Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226

Query: 211 PMSELTETLVCALGLSVGLMGIVVGTVFIIQGL 243
             S++            G+ G V+G +F+  GL
Sbjct: 227 AQSKMLS----------GIGGFVLGLIFLGLGL 249


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 113 PEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172
           P+VTV+      L   N L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185

Query: 173 KISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGI 232
            +  L  +P + E+Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 233 VVGTVFIIQGL 243
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,563,197
Number of Sequences: 37866
Number of extensions: 408194
Number of successful extensions: 1060
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 114
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.