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Search of human proteins with 169172087
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 593 e-170
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 2e-05
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 45 7e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 44 2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 44 2e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 44 2e-04
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 44 2e-04
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 43 3e-04
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 43 3e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|7706501 WW domain binding protein 11 [Homo sapiens] 41 0.001
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 41 0.001
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 41 0.001
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 41 0.001
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 40 0.002
gi|118498339 EMI domain containing 2 [Homo sapiens] 40 0.002
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 40 0.003
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 40 0.003
gi|154146199 sal-like 3 [Homo sapiens] 40 0.003
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 39 0.004
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 593 bits (1529), Expect = e-170
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK
Sbjct: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
Query: 61 LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE 120
LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE
Sbjct: 61 LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE 120
Query: 121 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 180
WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL
Sbjct: 121 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 180
Query: 181 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 240
SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG
Sbjct: 181 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 240
Query: 241 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 278
EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR
Sbjct: 241 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 278
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 442 bits (1137), Expect = e-124
Identities = 223/278 (80%), Positives = 225/278 (80%), Gaps = 30/278 (10%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAAL GG R +
Sbjct: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALS---------GGPGRAA---- 47
Query: 61 LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE 120
G GRG P P P R +P GCCAALAGGDTNGE
Sbjct: 48 -----------GSAIGRGAHLSPSRPPAAPPPRREVLSSP------GCCAALAGGDTNGE 90
Query: 121 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 180
WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL
Sbjct: 91 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 150
Query: 181 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 240
SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG
Sbjct: 151 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 210
Query: 241 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 278
EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR
Sbjct: 211 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 248
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 442 bits (1137), Expect = e-124
Identities = 223/278 (80%), Positives = 225/278 (80%), Gaps = 30/278 (10%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAAL GG R +
Sbjct: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALS---------GGPGRAA---- 47
Query: 61 LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE 120
G GRG P P P R +P GCCAALAGGDTNGE
Sbjct: 48 -----------GSAIGRGAHLSPSRPPAAPPPRREVLSSP------GCCAALAGGDTNGE 90
Query: 121 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 180
WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL
Sbjct: 91 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 150
Query: 181 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 240
SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG
Sbjct: 151 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 210
Query: 241 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 278
EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR
Sbjct: 211 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 248
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 442 bits (1137), Expect = e-124
Identities = 223/278 (80%), Positives = 225/278 (80%), Gaps = 30/278 (10%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAAL GG R +
Sbjct: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALS---------GGPGRAA---- 47
Query: 61 LSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGE 120
G GRG P P P R +P GCCAALAGGDTNGE
Sbjct: 48 -----------GSAIGRGAHLSPSRPPAAPPPRREVLSSP------GCCAALAGGDTNGE 90
Query: 121 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 180
WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL
Sbjct: 91 WILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVL 150
Query: 181 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 240
SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG
Sbjct: 151 SGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAG 210
Query: 241 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 278
EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR
Sbjct: 211 EGFVPVAKALQVEPYLLWEGPAFSDSRRALCRLLAEKR 248
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 47.8 bits (112), Expect = 1e-05
Identities = 46/144 (31%), Positives = 55/144 (38%), Gaps = 28/144 (19%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASG----------PGSPVLCAAALRRPRGGRCRRGGD 52
P PP C PRP P + P PA+G P P L R GR G+
Sbjct: 39 PRPPLCAPRPAPGRAQSP---VPAAGAVPSPPAAAHPARPALRGETPAPGRRGRATTRGE 95
Query: 53 PRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQ------- 105
+PS LS R RG G GRG P P P+ R P PAP G ++
Sbjct: 96 VQPSVRPPLS----HRPLRGGGMGRGR---PGKGPPPNPSRRLP-PAPPGGRRTWLSALA 147
Query: 106 PGCCAALAGGDTNGEWILRGSTWG 129
G A AG + R + WG
Sbjct: 148 TGPAAGGAGRRRRSPPVFRAADWG 171
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 29/88 (32%)
Query: 72 GPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLC 131
G G+GR RH R P R PA R P+ P LC
Sbjct: 14 GGGQGRH-RHSSRA-----PGTRTPATPARSPRPP-----------------------LC 44
Query: 132 PPSPGCGAGRRALATPGPLESPAAAQDP 159
P P G + + G + SP AA P
Sbjct: 45 APRPAPGRAQSPVPAAGAVPSPPAAAHP 72
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/158 (31%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
+V P GP + P E P + P P A RP GG +R G P P L
Sbjct: 62 VVSGSPAGAAGAGPAA---PAEGAPGAAPEPP---PAGRARPGGGGPQRPGPPSPRRPLV 115
Query: 61 LSAASDWRAQ-RGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNG 119
+ + A+ R P EG P P A P PAP GP +P AALA
Sbjct: 116 PAGPAPPAAKLRPPPEGSAGSCAP--VPAAAAVAAGPEPAPAGPAKPAGPAALA------ 167
Query: 120 EWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQ 157
P PG G G PG P AAQ
Sbjct: 168 ---------ARAGPGPGPGPGPGPGPGPGKPAGPGAAQ 196
Score = 40.4 bits (93), Expect = 0.002
Identities = 62/253 (24%), Positives = 74/253 (29%), Gaps = 78/253 (30%)
Query: 3 PAPPPCG---------PRPGPRSHKLPRECFPASGPGSPVLCAAALRRP---RGGRCR-- 48
P PPP G RPGP S PR +GP P AA LR P G C
Sbjct: 87 PEPPPAGRARPGGGGPQRPGPPS---PRRPLVPAGPAPP---AAKLRPPPEGSAGSCAPV 140
Query: 49 -------RGGDPRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPR 101
G +P P+ K + + A+ GPG G G P P P
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG-------------PGPGPGPGPG 187
Query: 102 GPKQPGCCAALAGGDT----------------NGEWILRGS---------------TWGL 130
P PG L G NG L
Sbjct: 188 KPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA 247
Query: 131 CPPSPGCGA-------GRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGL 183
PP+P + A A P P +PA P GP ++ P A +G
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 184 LVGAGVGPRLPCG 196
GA P G
Sbjct: 308 SAGAAPAPAPAAG 320
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 46.2 bits (108), Expect = 3e-05
Identities = 48/154 (31%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 2 VPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAH--- 58
+P PPP PR G S PR P +G +P L P RCRR + P+ H
Sbjct: 181 LPKPPPLQPRLGSASP--PRLAAPLAGSRAPSL------SPFPRRCRRRAERSPAGHGLP 232
Query: 59 --LKLSAASD---WRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALA 113
LS + R +RG GE R +R +G + P P P GP PG
Sbjct: 233 LPRSLSRGGEVVGARRRRG-GEERRVRGRRQGCALGSP------PIPAGPAAPGRAGERR 285
Query: 114 GGDTNGEWILRGSTWGLCPPSPGCGAGRRALATP 147
+W RG G+ P G G R TP
Sbjct: 286 AA---RQWRKRGGGPGVSPREGAQGEGVRGGVTP 316
Score = 28.1 bits (61), Expect = 8.8
Identities = 42/150 (28%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 85 GAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRAL 144
G V P AR P P P++P A EW G+ W + G G L
Sbjct: 32 GPAVCSPTARAPPPILPAPQRPPTRAR--------EW--EGAAWA----AGATGVGAALL 77
Query: 145 ATPG-------PLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGA 197
A PG PL A+ P P G EP R + G R A
Sbjct: 78 ALPGSRRLGRVPLTFREASPGPAPGAPRARG-SCGREPGPR---RRRAPSSAGKRPAAAA 133
Query: 198 RWFHAPERPRCADLAALRGDGSALKTVVFP 227
R AP R R R GS ++ V P
Sbjct: 134 R--AAPPRQRSLARCLPRSVGSCVRPSVGP 161
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 45.1 bits (105), Expect = 7e-05
Identities = 55/170 (32%), Positives = 63/170 (37%), Gaps = 26/170 (15%)
Query: 7 PC----GPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRG-----GRCRRGGDPRPSA 57
PC G RP S + R C PA P P LC RP G C R RP
Sbjct: 46 PCMCTAGRRPNRASGRRRRSCSPA--PTWPPLCCYPQSRPTASAAGPGACMRASG-RPHG 102
Query: 58 HLKLSAASDWRAQ-RGPGEGRGLRHWPR--GAPVTVPAAR-----RPAPAPRGPKQPGCC 109
+ S A + R PG G LR PR P PA+R RP PR ++
Sbjct: 103 NTTASTAPPRHPRPRRPG-GPALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRGRRA 161
Query: 110 AALAGGDTNGEWILRGSTWGLCPPSPGCGA--GRRALATPGP-LESPAAA 156
A W RG+ LC C G R TP P SP+AA
Sbjct: 162 GACKPSCAGAAWSARGAP--LCSYRTSCAGSCGARTAPTPAPTCASPSAA 209
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPR-------GGRCRRGGDPRP 55
PA PP RP P+ P GPG +RP G G P P
Sbjct: 452 PAGPPAQQRPPPQGGP------PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLP 505
Query: 56 SAHLKLSAASDWRAQRG--PGEGRGLRHWP-RGAPVTVPAARRPA-PAPR---GPKQP-- 106
++A A + P +G+G + P G P PAAR PA P+P+ GP Q
Sbjct: 506 QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATR 565
Query: 107 -----GCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLP 161
G A G G +G PP P + + A P P P Q P P
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQRQGPPQK--PPGPAGPTRQASQAGPVPRTGPPTTQQPRP 623
Query: 162 RHVGPSG 168
GP+G
Sbjct: 624 SGPGPAG 630
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPR-------GGRCRRGGDPRP 55
PA PP RP P+ P GPG +RP G G P P
Sbjct: 452 PAGPPAQQRPPPQGGP------PQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLP 505
Query: 56 SAHLKLSAASDWRAQRG--PGEGRGLRHWP-RGAPVTVPAARRPA-PAPR---GPKQP-- 106
++A A + P +G+G + P G P PAAR PA P+P+ GP Q
Sbjct: 506 QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATR 565
Query: 107 -----GCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLP 161
G A G G +G PP P + + A P P P Q P P
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQRQGPPQK--PPGPAGPTRQASQAGPVPRTGPPTTQQPRP 623
Query: 162 RHVGPSG 168
GP+G
Sbjct: 624 SGPGPAG 630
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 43.5 bits (101), Expect = 2e-04
Identities = 81/285 (28%), Positives = 105/285 (36%), Gaps = 37/285 (12%)
Query: 3 PAPPPCGPRPGPRSHKLPRE------CFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPS 56
P+PP P PGP K E C PA+ V+CA GD P
Sbjct: 355 PSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPP 414
Query: 57 AHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARR--PAPAPRGPKQPGCCAALAG 114
+ + A+ GP R + P +P + P PAP P++ G
Sbjct: 415 ETDPAATSEAPSARDGP--ERSVPKEAEPTPPVLPDEEKGPPGPAPE-PEREAETEPERG 471
Query: 115 GDTNGEWILRGSTWGLCP-PSP----GCGAGRRALATPGPLESP--AAAQDPLPRHVGPS 167
T E I G+ P PSP C R A A+ GP SP AAA+ P P GP
Sbjct: 472 AGTEPERI--GTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESP-PVEPGPG 528
Query: 168 GLGWSLEPAARVLSGLLVGAGVGPRLPCGARWFHAPERPRCADLAALRG--DGSALKTVV 225
SL+ A P P GA APER A LRG S
Sbjct: 529 ----SLDAEAAAPERPKAERAEAP--PAGAE-RAAPERKAERGGAELRGAKKFSVSSCRA 581
Query: 226 FPKPSLLSGLQGAAGEGFVPVAKALQVEPYLLWEGPAFSDSRRAL 270
P+P + L+ A+G +P+A++ V W A D + L
Sbjct: 582 RPRPGVSRPLERASGR--LPLARSGPV-----WRSEAALDDLQGL 619
Score = 29.3 bits (64), Expect = 4.0
Identities = 49/187 (26%), Positives = 59/187 (31%), Gaps = 63/187 (33%)
Query: 6 PPCGPRPG--------PRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGD----- 52
PP P PG P K R P +G A + RGG RG
Sbjct: 521 PPVEPGPGSLDAEAAAPERPKAERAEAPPAGAER---AAPERKAERGGAELRGAKKFSVS 577
Query: 53 -----PRPSAHLKLSAASD----------WRAQRGPGEGRGLRHWPRGAPVTVPAARRPA 97
PRP L AS WR++ + +GL P +P
Sbjct: 578 SCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPE---------PQHAKPG 628
Query: 98 P---APRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPA 154
P A RGP+ G AA G SP + A A PG E
Sbjct: 629 PRKLAERGPQDSGDRAASPAGPRK---------------SP-----QEAAAAPGTREPCP 668
Query: 155 AAQDPLP 161
AAQ+P P
Sbjct: 669 AAQEPAP 675
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 43.5 bits (101), Expect = 2e-04
Identities = 57/188 (30%), Positives = 70/188 (37%), Gaps = 22/188 (11%)
Query: 9 GPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLKLSA--ASD 66
GPRPGP P G G P A L R G PR +A +LSA A
Sbjct: 36 GPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERG-------PRRAAVPELSAQPAGS 88
Query: 67 WRAQRGPGEGRGLRHWPRGAPVTV--------PAARRPAPAPRGPKQPGCCAALAGGDTN 118
RA +G G R + +++ P + R P P GP P +A + +
Sbjct: 89 PRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGRSDPRP-GPGPPSVGSARSSVSSL 147
Query: 119 GEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLP--RHVGPSGLGWSLEPA 176
G G+ PP C A R+ GP P A PLP R GPS LE
Sbjct: 148 GSRGSAGAYADFLPPG-ACPAPARSPEPAGPAPFPLPAL-PLPPGREGGPSAAERRLEAL 205
Query: 177 ARVLSGLL 184
R L L
Sbjct: 206 TRELERAL 213
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 43.1 bits (100), Expect = 3e-04
Identities = 63/217 (29%), Positives = 73/217 (33%), Gaps = 39/217 (17%)
Query: 12 PGPRSHKLPRECFPASGPGSPVLCAAA------LRRPRGGRCRRGGDPRPSAHLKLSAAS 65
P PRS P A GPG+P C + P G + R+ P A
Sbjct: 37 PTPRSRVSPGVTSLAVGPGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGREDAG 96
Query: 66 DWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAP----RG-PKQPGCCAALAGGDTNGE 120
R R P E LR G P R AP RG PK P + +GG +G
Sbjct: 97 VGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAAPGRKLRGEPKTPPGRSGPSGGVRSG- 155
Query: 121 WILRGSTWGLCPPSPGCG---------AGRRALATPGPLESPAAAQDP-LPRHVGPSGLG 170
G G G R A PGPL PA P PR P
Sbjct: 156 ---AGHRAAAAEHQLGAGFSVRNGPGPPARLPPAPPGPLLRPARPPRPYFPRPRTPP--- 209
Query: 171 WSLEPAARVLSGLLVGAGVGPRLP-CGARWFHAPERP 206
+ EP +R L P LP C +RW AP P
Sbjct: 210 -TCEPPSRKLP---------PPLPLCRSRWVLAPPPP 236
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/121 (35%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 6 PPCGPRPGPRSHKLPRECFPASGPGS-------PVLCAAALRRPRGGRCRRGGDPRPSAH 58
PPC PR G R C PA GP + P RP G RC G P+
Sbjct: 73 PPCSPRRGRRGRPTQEVC-PAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPAL- 130
Query: 59 LKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRG----PKQPGCCAALAG 114
L A A+R P WPR PV A RR P P G PKQ AAL
Sbjct: 131 --LGAP----ARRPPAHIPAQPRWPRLQPV---AKRRARPVPPGLPGAPKQ----AALTP 177
Query: 115 G 115
G
Sbjct: 178 G 178
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/121 (35%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 6 PPCGPRPGPRSHKLPRECFPASGPGS-------PVLCAAALRRPRGGRCRRGGDPRPSAH 58
PPC PR G R C PA GP + P RP G RC G P+
Sbjct: 73 PPCSPRRGRRGRPTQEVC-PAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPAL- 130
Query: 59 LKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRG----PKQPGCCAALAG 114
L A A+R P WPR PV A RR P P G PKQ AAL
Sbjct: 131 --LGAP----ARRPPAHIPAQPRWPRLQPV---AKRRARPVPPGLPGAPKQ----AALTP 177
Query: 115 G 115
G
Sbjct: 178 G 178
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/121 (35%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 6 PPCGPRPGPRSHKLPRECFPASGPGS-------PVLCAAALRRPRGGRCRRGGDPRPSAH 58
PPC PR G R C PA GP + P RP G RC G P+
Sbjct: 73 PPCSPRRGRRGRPTQEVC-PAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPAL- 130
Query: 59 LKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRG----PKQPGCCAALAG 114
L A A+R P WPR PV A RR P P G PKQ AAL
Sbjct: 131 --LGAP----ARRPPAHIPAQPRWPRLQPV---AKRRARPVPPGLPGAPKQ----AALTP 177
Query: 115 G 115
G
Sbjct: 178 G 178
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 42.7 bits (99), Expect = 3e-04
Identities = 56/201 (27%), Positives = 77/201 (38%), Gaps = 27/201 (13%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLKLS 62
P PPP G S LP A+GP P++ AA +P+G GG P ++ L+
Sbjct: 276 PPPPPVGGAVAQSSAPLPPFPGAATGP-QPMMAAAQPSQPQGAG--PGGQTLPPTNVTLA 332
Query: 63 A-ASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPA----PAPRGPKQPGCCAALAGGDT 117
A Q GP G PAA++P P P+ P PG L +
Sbjct: 333 QPAMSLPPQPGPAVG-------------APAAQQPQQFAYPQPQIP--PG--HLLPVQPS 375
Query: 118 NGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAA 177
L+ GL PPSP + A A+P + VG +G S +P+
Sbjct: 376 GQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNASSVGAQLMGASSQPSE 435
Query: 178 RVL--SGLLVGAGVGPRLPCG 196
+ +G G V P P G
Sbjct: 436 AMAPRTGPAQGGQVAPCQPTG 456
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 41.2 bits (95), Expect = 0.001
Identities = 54/179 (30%), Positives = 62/179 (34%), Gaps = 47/179 (26%)
Query: 3 PAPPPC-------------GPRPG-----PRSHKLPRECFPASGPGSPVLCAAALRRPRG 44
PA PPC P PG P + AS G+ + A L P G
Sbjct: 100 PAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCG 159
Query: 45 GRCRRGGD---PRP-SAHLKLSAASD--WRAQRGPGEGR--GLRHWPRGAPVTVPAARRP 96
G G RP SA L S +S W A GPG R WP G V P A
Sbjct: 160 GTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAA 219
Query: 97 APAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAA 155
+ AP P G AA G W+ P PGC TPG +PA+
Sbjct: 220 SVAPPPPAVAGAPAAAFRG-----WV--------AAPDPGC--------TPGTENAPAS 257
Score = 37.7 bits (86), Expect = 0.011
Identities = 62/217 (28%), Positives = 69/217 (31%), Gaps = 34/217 (15%)
Query: 4 APPPCGPRPGPRSHKLPRE----CFPASGP--GSPVLCAAALRR---PRGGRCRRGGDPR 54
+PP P S + P CFPA G P + A R P G CR G R
Sbjct: 53 SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGR 112
Query: 55 PSAHLKLSAASDWRAQRGPGEGRGLR---HWPRGAPVTVPAARRPAPAPRGPKQPGCCAA 111
+A R PG RG GA A R PA R P P C
Sbjct: 113 AAAT---------RRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP--PPCGGT 161
Query: 112 LAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGW 171
G G LR P SP + RR A PGP A P P G
Sbjct: 162 SLGA---GSRALRRPGSAALPRSP--SSSRRWAAMPGP-----GAPRPGAPGTWPVGFAV 211
Query: 172 SLEPAARVLSGLLVGAGVGPRLPCGARWFHAPERPRC 208
+ PAA A G W AP+ P C
Sbjct: 212 AAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPD-PGC 247
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 41.2 bits (95), Expect = 0.001
Identities = 47/160 (29%), Positives = 52/160 (32%), Gaps = 31/160 (19%)
Query: 2 VPAPPPCGPRPGP--RSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHL 59
+P PPP GP P P R P P PG+P RP G RG PR
Sbjct: 407 MPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAP-----PFLRPPGMPGLRGPLPR----- 456
Query: 60 KLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNG 119
GP GR P G P P P P PRGP A G
Sbjct: 457 --------LLPPGPPPGR-----PPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPR 503
Query: 120 EWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDP 159
++R P P G L P PL +P P
Sbjct: 504 PGMMRP------PLVPPLGPAPPGLFPPAPLPNPGVLSAP 537
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.8 bits (94), Expect = 0.001
Identities = 75/258 (29%), Positives = 91/258 (35%), Gaps = 38/258 (14%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGP----GSPVLCAAALRRPRGGRCRRG--GDPRPSAH 58
P P GP PGP P+ SGP G P L+ P G +G GD PS
Sbjct: 914 PGPPGP-PGPSGKDGPKGARGDSGPPGRAGEP-----GLQGPAGPPGEKGEPGDDGPSGA 967
Query: 59 LKLSAASDWRAQRG----PGEGRGLRHWPRGAPVTVPAARRPAPAP---RGPKQPGCCAA 111
QRG PG+ RG R +P + ++ AP RGP P
Sbjct: 968 EGPPGPQGLAGQRGIVGLPGQ-RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 112 LAGGDTNGEWILRGSTWGLCPPSPGCGAGRRA-LATPGPLESPAAAQDP-LPRHVGPSGL 169
L G GE GS PP AG + G + +P A P P GP+G
Sbjct: 1027 LTG--PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084
Query: 170 GWSLEPAARVLSGLLVGAGVGPRLPCGARWFHAPERPRCADLAA-------LRGDGSALK 222
A +GP P GAR P+ PR A L+G
Sbjct: 1085 QGDRGEAG-------AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 223 TVVFPKPSLLSGLQGAAG 240
P P SG QGA+G
Sbjct: 1138 LQGLPGPPGPSGDQGASG 1155
Score = 38.1 bits (87), Expect = 0.009
Identities = 81/303 (26%), Positives = 96/303 (31%), Gaps = 73/303 (24%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAA-------ALRRPRGGRCRRG-----GD 52
P P GP PGP PA GPG P A R P G + RG G
Sbjct: 350 PGPAGP-PGPVG--------PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGS 400
Query: 53 PRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPK----QPGC 108
P P+ +G G+ P P + A P GPK +PG
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 460
Query: 109 CAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRA----------LATPGPLESPA---- 154
GE G P P G+R + PG +P
Sbjct: 461 AGFKGEQGPKGE---PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGF 517
Query: 155 AAQDPL------PRHVGPSGL-------------GWSLEPAARVLSGLLVGAG----VGP 191
QD L P GPSGL G P AR L+G AG VGP
Sbjct: 518 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 577
Query: 192 RLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAGEGFVPVAKALQ 251
G P P+ A RG + FP P +G G AGE +P A L+
Sbjct: 578 SGAPGEDGRPGPPGPQGA-----RGQPGVMG---FPGPKGANGEPGKAGEKGLPGAPGLR 629
Query: 252 VEP 254
P
Sbjct: 630 GLP 632
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.8 bits (94), Expect = 0.001
Identities = 75/258 (29%), Positives = 91/258 (35%), Gaps = 38/258 (14%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGP----GSPVLCAAALRRPRGGRCRRG--GDPRPSAH 58
P P GP PGP P+ SGP G P L+ P G +G GD PS
Sbjct: 845 PGPPGP-PGPSGKDGPKGARGDSGPPGRAGEP-----GLQGPAGPPGEKGEPGDDGPSGA 898
Query: 59 LKLSAASDWRAQRG----PGEGRGLRHWPRGAPVTVPAARRPAPAP---RGPKQPGCCAA 111
QRG PG+ RG R +P + ++ AP RGP P
Sbjct: 899 EGPPGPQGLAGQRGIVGLPGQ-RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 112 LAGGDTNGEWILRGSTWGLCPPSPGCGAGRRA-LATPGPLESPAAAQDP-LPRHVGPSGL 169
L G GE GS PP AG + G + +P A P P GP+G
Sbjct: 958 LTG--PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015
Query: 170 GWSLEPAARVLSGLLVGAGVGPRLPCGARWFHAPERPRCADLAA-------LRGDGSALK 222
A +GP P GAR P+ PR A L+G
Sbjct: 1016 QGDRGEAG-------AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 223 TVVFPKPSLLSGLQGAAG 240
P P SG QGA+G
Sbjct: 1069 LQGLPGPPGPSGDQGASG 1086
Score = 38.1 bits (87), Expect = 0.009
Identities = 81/303 (26%), Positives = 96/303 (31%), Gaps = 73/303 (24%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAA-------ALRRPRGGRCRRG-----GD 52
P P GP PGP PA GPG P A R P G + RG G
Sbjct: 281 PGPAGP-PGPVG--------PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGS 331
Query: 53 PRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPK----QPGC 108
P P+ +G G+ P P + A P GPK +PG
Sbjct: 332 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 391
Query: 109 CAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRA----------LATPGPLESPA---- 154
GE G P P G+R + PG +P
Sbjct: 392 AGFKGEQGPKGE---PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGF 448
Query: 155 AAQDPL------PRHVGPSGL-------------GWSLEPAARVLSGLLVGAG----VGP 191
QD L P GPSGL G P AR L+G AG VGP
Sbjct: 449 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 508
Query: 192 RLPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAGEGFVPVAKALQ 251
G P P+ A RG + FP P +G G AGE +P A L+
Sbjct: 509 SGAPGEDGRPGPPGPQGA-----RGQPGVMG---FPGPKGANGEPGKAGEKGLPGAPGLR 560
Query: 252 VEP 254
P
Sbjct: 561 GLP 563
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/143 (28%), Positives = 51/143 (35%), Gaps = 25/143 (17%)
Query: 96 PAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAA 155
P P PRGP PG GG G + L PP PG G P P P++
Sbjct: 352 PPPTPRGPPPPG-----RGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSS 406
Query: 156 AQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGARWFHAPERPRCADLAALR 215
P P + P +L PA GL G G G L + + P + +AL+
Sbjct: 407 GNGPAPPPLPP-----ALVPA----GGLAPGGGRGALLDQIRQGIQLNKTPGAPESSALQ 457
Query: 216 GDGSALKTVVFPKPSLLSGLQGA 238
P P GL GA
Sbjct: 458 -----------PPPQSSEGLVGA 469
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/168 (27%), Positives = 58/168 (34%), Gaps = 20/168 (11%)
Query: 8 CGPRPGPR-----SHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLKLS 62
C +PGP +H P P S PG A R G RRG D P +
Sbjct: 238 CTAQPGPAFPHRATHLDPARLSPESAPGP----ARRGRASVPGPARRGCDSAPGPARRGR 293
Query: 63 AASDWRAQRG----PGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTN 118
++ A RG PG R R G + V AR A PG
Sbjct: 294 DSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPGTGLRSRSTQQR 353
Query: 119 GEWILRGSTWGLCPPSPGCGAGRRALA------TPGPLESPAAAQDPL 160
+ R S G +P CG G LA +P P E P+ A P+
Sbjct: 354 SALLSRRSLSGSADENPSCGTGSERLAFQSRSGSPDP-EVPSRASPPV 400
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 40.0 bits (92), Expect = 0.002
Identities = 66/211 (31%), Positives = 78/211 (36%), Gaps = 47/211 (22%)
Query: 90 VPAARRPA-----PAPRGPKQPGCCAALAG--GDTNGEWILRGSTWGLCPPSPGCGAGRR 142
VP RRP P GP P G G T GE G L PP P G
Sbjct: 189 VPRQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQT-GEKGPAGPPGLLGPPGPRGLPGE- 246
Query: 143 ALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPA-------ARVLSGLL--VGAGV-GPR 192
+ PGP P A +P P P G +SL+P +R+ S ++ V AGV GPR
Sbjct: 247 -MGRPGPPGPPGPAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPR 305
Query: 193 LPCGARWFHAPERPRCADLAALRGDGSALKTVVFPKPSLLSGLQGAAGE-GFV-----PV 246
P G P P P P G QG AGE G V P
Sbjct: 306 GPPGPPGPPGPRGP--------------------PGPPGTPGSQGLAGERGTVGPSGEPG 345
Query: 247 AKALQVEPYLLWEGPAFSDSRRALCRLLAEK 277
K + E EG R AL ++LAE+
Sbjct: 346 VKGEEGEKAATAEGEGVQQLREAL-KILAER 375
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/180 (26%), Positives = 60/180 (33%), Gaps = 33/180 (18%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPR-PSAHLKLSA 63
P R G R+ P P G P L A R GGR R G+ + P L+ A
Sbjct: 16 PTDAEKRGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 75
Query: 64 ASDWRAQRGPGEGRGLRHWPRGAPVTVPAA----------------RRPAPAPRGPKQPG 107
A A P R PRG + +P A R+P PA R P+
Sbjct: 76 A----APAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGAL 131
Query: 108 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 167
L G W PP A ++ P A+A+ LP GP+
Sbjct: 132 ASCGLRAG------------WAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPA 179
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/180 (26%), Positives = 60/180 (33%), Gaps = 33/180 (18%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPR-PSAHLKLSA 63
P R G R+ P P G P L A R GGR R G+ + P L+ A
Sbjct: 10 PTDAEKRGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 69
Query: 64 ASDWRAQRGPGEGRGLRHWPRGAPVTVPAA----------------RRPAPAPRGPKQPG 107
A A P R PRG + +P A R+P PA R P+
Sbjct: 70 A----APAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGAL 125
Query: 108 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 167
L G W PP A ++ P A+A+ LP GP+
Sbjct: 126 ASCGLRAG------------WAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPA 173
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/180 (26%), Positives = 60/180 (33%), Gaps = 33/180 (18%)
Query: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPR-PSAHLKLSA 63
P R G R+ P P G P L A R GGR R G+ + P L+ A
Sbjct: 10 PTDAEKRGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 69
Query: 64 ASDWRAQRGPGEGRGLRHWPRGAPVTVPAA----------------RRPAPAPRGPKQPG 107
A A P R PRG + +P A R+P PA R P+
Sbjct: 70 A----APAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGAL 125
Query: 108 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 167
L G W PP A ++ P A+A+ LP GP+
Sbjct: 126 ASCGLRAG------------WAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPA 173
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 39.7 bits (91), Expect = 0.003
Identities = 55/179 (30%), Positives = 60/179 (33%), Gaps = 53/179 (29%)
Query: 3 PAPPPCGPRPGPR----------SHKLPRECFPASGPGSPVLCAAA--LRRPRGGRCRRG 50
PA P P P P S P SGP +P A L RP G G
Sbjct: 244 PAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPG 303
Query: 51 GDPRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRG-----PKQ 105
G PSA SAA PAA PAPAP+ P+
Sbjct: 304 GPAEPSAPAAPSAA------------------------PAPAAPAPAPAPQSAASSQPQS 339
Query: 106 PGCCAALAGGDTNGEWILRGSTWGLCPPSPGC-GAGRRALATPGPLESPAA---AQDPL 160
ALA G L G+ GL PSP + P PL S AA A DPL
Sbjct: 340 ASTPPALAPGS------LLGAAPGL--PSPLLPQTSASGVIFPNPLVSIAATANALDPL 390
Score = 30.8 bits (68), Expect = 1.4
Identities = 58/221 (26%), Positives = 72/221 (32%), Gaps = 30/221 (13%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALR---RPRGGRCRRGGDPRPSAHL 59
P PPP P P ++ P S + A R GG GG + L
Sbjct: 145 PRPPPAAPAPPTPAYGAPSTNVTLEALLSTKVAVAQFSQGARAAGGSGAGGGVAAAAVPL 204
Query: 60 KLSAASDWRAQR--------GPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGC--- 108
L + Q+ L P P PAA AP P + PG
Sbjct: 205 ILEQLMALQQQQIHQLQLIEQIRSQVALMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAAL 264
Query: 109 -------CAALAGGDTNGEWILRGSTWGLCPPS----PGCGAGRRALATPGPLESPAA-A 156
AA+AG G+ P S PG A A A P +PAA A
Sbjct: 265 PLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPA 324
Query: 157 QDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVG---PRLP 194
P P+ S + P A + G L+GA G P LP
Sbjct: 325 PAPAPQSAASSQPQSASTPPA-LAPGSLLGAAPGLPSPLLP 364
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFP--ASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLK 60
PAPPP GP P P H E P A+ G P R R C R G P ++ K
Sbjct: 41 PAPPP-GPGPAPPQHPPRAEALPPEAADEGGP----RGRLRSRDSSCGRPGTPGAASTAK 95
Query: 61 LSAASD---WRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDT 117
S + Q P G P+ + AA PAP P ++ G A G+
Sbjct: 96 GSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAGPAGEP 155
Query: 118 NG 119
G
Sbjct: 156 RG 157
Score = 38.1 bits (87), Expect = 0.009
Identities = 43/130 (33%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 1 MVPAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGG--RCRRGGDPRPSAH 58
+V PPP GP P S P PAS PG+P A P GG G P+
Sbjct: 757 LVRRPPP-GPAPAAASPGPPP---PASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARR 812
Query: 59 LK-----LSAASDWRAQRGPGEGRGLR----HWPRGAPVTVPAARRPAPAP--RGPKQPG 107
L LSA+ PG R PR P PAAR AP+P R PG
Sbjct: 813 LSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGP--TPAARAAAPSPDRRDSASPG 870
Query: 108 CCAALAGGDT 117
L D+
Sbjct: 871 AAGGLDPQDS 880
Score = 30.0 bits (66), Expect = 2.3
Identities = 40/157 (25%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 3 PAP-PPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLKL 61
PAP PP P P P + P PA PG A + P P A
Sbjct: 18 PAPGPPPPPPPAPPQQQPPPPPPPAPPPGPG---PAPPQHP------------PRAEALP 62
Query: 62 SAASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGEW 121
A+D RG R G P A+ G +P C A G G
Sbjct: 63 PEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPK 122
Query: 122 ILRGSTWGLCPPSPGCGAGRRA-LATPGPLESPAAAQ 157
+ P+PG G A GP P +Q
Sbjct: 123 VSFSCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQ 159
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 39.3 bits (90), Expect = 0.004
Identities = 55/177 (31%), Positives = 61/177 (34%), Gaps = 52/177 (29%)
Query: 3 PAPPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALRRPRGGRCRRGGDPRPSAHLKLS 62
P PP G GP + P RRPRG RGG RP + +
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPT-------------RRPRG---TRGGARRPGVRGQGA 189
Query: 63 AASDWRAQRGPGEGRGLRHWPRGAPVTVPAARRPAPAPRGP-KQPGCCAALAGGDTNGEW 121
AA GP R P GAP P+ R P P PR P + P
Sbjct: 190 AAV------GPTGPR-----PTGAP---PSRRTPPPGPRRPLRSPH-------------- 221
Query: 122 ILRGSTWGLC-PPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAA 177
GS W PPSP GA AL P S A PL GL W+ E A
Sbjct: 222 --SGSGWTPARPPSPPAGA-PEALRPPA---STTRAPAPLTLSFSARGLAWAGESPA 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,894,259
Number of Sequences: 37866
Number of extensions: 1220201
Number of successful extensions: 7668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 696
Number of HSP's that attempted gapping in prelim test: 6498
Number of HSP's gapped (non-prelim): 1643
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.