Guide to the Human Genome
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Name: LOC645249 Sequence: fasta or formatted (248aa) NCBI GI: 113419893
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {248aa} PREDICTED: hypothetical protein
alt mRNA {248aa} PREDICTED: hypothetical protein
alt prot {278aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         36           3
 C cysteine            4.0         10           2
 D aspartate           2.0          5           1
 E glutamate           4.0         10           1
 F phenylalanine       2.0          5           1
 G glycine            14.1         35           2
 H histidine           1.6          4           1
 I isoleucine          0.8          2           1
 K lysine              2.0          5           1
 L leucine            11.7         29           2
 M methionine          0.4          1           1
 N asparagine          0.4          1           1
 P proline            15.3         38           3
 Q glutamine           1.2          3           1
 R arginine            8.9         22           2
 S serine              8.1         20           2
 T threonine           1.6          4           1
 V valine              4.8         12           2
 W tryptophan          2.0          5           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645249             1.000   PREDICTED: hypothetical protein 
LOC645249             1.000   PREDICTED: hypothetical protein 
LOC645249             0.837   PREDICTED: hypothetical protein 
SYN1                  0.048   synapsin I isoform Ia 
SYN1                  0.048   synapsin I isoform Ib 
C1orf229              0.040   hypothetical protein LOC388759 
LOC100287920          0.038   PREDICTED: hypothetical protein XP_002344198 
UNCX                  0.038   UNC homeobox 
WBP11                 0.038   WW domain binding protein 11 
LOC100292184          0.038   PREDICTED: hypothetical protein 
CASKIN2               0.038   cask-interacting protein 2 isoform b 
CASKIN2               0.038   cask-interacting protein 2 isoform a 
RXRB                  0.036   retinoid X receptor, beta 
LOC100291220          0.034   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.034   PREDICTED: hypothetical protein XP_002343483 
ZFPM1                 0.034   zinc finger protein, multitype 1 
SEMA6B                0.032   semaphorin 6B precursor 
LOC100131774          0.032   PREDICTED: hypothetical protein 
WDR81                 0.032   PREDICTED: WD repeat domain 81 
LOC100131774          0.032   PREDICTED: hypothetical protein 
LOC100131774          0.032   PREDICTED: hypothetical protein 
C2orf55               0.032   hypothetical protein LOC343990 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
KIAA1522              0.030   hypothetical protein LOC57648 
LOC100289316          0.030   PREDICTED: hypothetical protein 
LOC100289316          0.030   PREDICTED: hypothetical protein XP_002343619 
LOC389813             0.030   similar to CG15216-PA 
DIAPH1                0.028   diaphanous 1 isoform 2 
DIAPH1                0.028   diaphanous 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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