Guide to the Human Genome
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Name: CXorf67 Sequence: fasta or formatted (503aa) NCBI GI: 42821110
Description:

hypothetical protein LOC340602

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         66           4
 C cysteine            1.6          8           1
 D aspartate           3.4         17           1
 E glutamate           4.8         24           2
 F phenylalanine       2.0         10           2
 G glycine             8.7         44           2
 H histidine           2.2         11           1
 I isoleucine          1.8          9           2
 K lysine              1.2          6           1
 L leucine             5.4         27           2
 M methionine          0.8          4           1
 N asparagine          1.4          7           2
 P proline            13.1         66           2
 Q glutamine           4.6         23           2
 R arginine            9.9         50           3
 S serine             16.3         82           5
 T threonine           5.4         27           2
 V valine              3.2         16           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC340602 
SRRM2                 0.062   splicing coactivator subunit SRm300 
SRRM1                 0.055   serine/arginine repetitive matrix 1 
FLJ37078              0.052   hypothetical protein LOC222183 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
KDM6B                 0.036   lysine (K)-specific demethylase 6B 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
KIAA1522              0.035   hypothetical protein LOC57648 
LOC100133756          0.033   PREDICTED: hypothetical protein, partial 
BAT2                  0.033   HLA-B associated transcript-2 
MAPT                  0.032   microtubule-associated protein tau isoform 1 
GLTSCR1               0.029   glioma tumor suppressor candidate region gene 1 [Ho...
SPEG                  0.029   SPEG complex locus 
MAPT                  0.029   microtubule-associated protein tau isoform 6 
RIN3                  0.029   Ras and Rab interactor 3 
SYDE1                 0.028   synapse defective 1, Rho GTPase, homolog 1 
LOC100130360          0.027   PREDICTED: hypothetical protein 
ARID1B                0.027   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
LOC100291634          0.027   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.027   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.027   PREDICTED: hypothetical protein 
KIAA0754              0.027   hypothetical protein LOC643314 
GAS2L1                0.026   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.026   growth arrest-specific 2 like 1 isoform a 
WIPF2                 0.026   WIRE protein 
MAP3K12               0.025   mitogen-activated protein kinase kinase kinase 12 [H...
LOC100288496          0.025   PREDICTED: hypothetical protein XP_002342747 
SETD1A                0.025   SET domain containing 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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