Guide to the Human Genome
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Name: LOC100293492 Sequence: fasta or formatted (264aa) NCBI GI: 239757749
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.1         53           3
 C cysteine            2.7          7           1
 D aspartate           2.3          6           1
 E glutamate           6.1         16           2
 F phenylalanine       1.1          3           1
 G glycine             9.5         25           2
 H histidine           0.0          0           0
 I isoleucine          0.4          1           1
 K lysine              2.3          6           1
 L leucine             6.8         18           3
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline            14.8         39           2
 Q glutamine           3.8         10           1
 R arginine           11.0         29           2
 S serine              6.1         16           2
 T threonine           3.8         10           1
 V valine              4.9         13           1
 W tryptophan          2.3          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729162             0.965   PREDICTED: similar to hCG1981372 
LOC729162             0.965   PREDICTED: similar to hCG1981372 
LOC389906             0.902   PREDICTED: similar to Serine/threonine-protein kina...
PRKX                  0.092   protein kinase, X-linked 
AMOT                  0.052   angiomotin isoform 2 
AMOT                  0.052   angiomotin isoform 1 
LOC729417             0.046   PREDICTED: hypothetical protein 
LOC729417             0.046   PREDICTED: hypothetical protein 
LOC729417             0.046   PREDICTED: hypothetical protein 
GRIN2D                0.042   N-methyl-D-aspartate receptor subunit 2D precursor ...
ZNF839                0.042   zinc finger protein 839 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
LOC100293375          0.040   PREDICTED: hypothetical protein 
C17orf65              0.040   hypothetical protein LOC339201 
LOC100292234          0.039   PREDICTED: hypothetical protein 
LOC100290708          0.039   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          0.039   PREDICTED: hypothetical protein XP_002342507 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
LOC728650             0.039   PREDICTED: hypothetical protein 
RANBP3                0.039   RAN binding protein 3 isoform RANBP3-a 
TAF4                  0.039   TBP-associated factor 4 
SAMD1                 0.039   sterile alpha motif domain containing 1 
GAS2L1                0.037   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.037   growth arrest-specific 2 like 1 isoform a 
FLJ37078              0.037   hypothetical protein LOC222183 
RANBP3                0.037   RAN binding protein 3 isoform RANBP3-d 
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
GPRIN1                0.037   G protein-regulated inducer of neurite outgrowth 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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