Guide to the Human Genome
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Name: LOC729162 Sequence: fasta or formatted (317aa) NCBI GI: 239746772
Description:

PREDICTED: similar to hCG1981372

Not currently referenced in the text

Other entries for this name:
alt prot {317aa} PREDICTED: similar to hCG1981372
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0         54           3
 C cysteine            2.2          7           1
 D aspartate           1.9          6           1
 E glutamate           5.4         17           2
 F phenylalanine       1.6          5           1
 G glycine             8.5         27           2
 H histidine           0.6          2           1
 I isoleucine          0.3          1           1
 K lysine              1.9          6           1
 L leucine             8.2         26           3
 M methionine          0.6          2           1
 N asparagine          0.9          3           1
 P proline            15.5         49           2
 Q glutamine           6.3         20           1
 R arginine           11.0         35           2
 S serine              6.6         21           1
 T threonine           3.8         12           1
 V valine              5.0         16           1
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1981372 
LOC729162             0.989   PREDICTED: similar to hCG1981372 
LOC389906             0.933   PREDICTED: similar to Serine/threonine-protein kina...
LOC100293492          0.800   PREDICTED: hypothetical protein 
ZNF839                0.192   zinc finger protein 839 
PRKX                  0.080   protein kinase, X-linked 
AMOT                  0.046   angiomotin isoform 2 
AMOT                  0.046   angiomotin isoform 1 
LOC388906             0.042   PREDICTED: hypothetical protein 
LOC388906             0.042   PREDICTED: hypothetical protein 
LOC388906             0.042   PREDICTED: hypothetical protein 
PCLO                  0.038   piccolo isoform 2 
PCLO                  0.038   piccolo isoform 1 
LOC100292234          0.035   PREDICTED: hypothetical protein 
LOC100290708          0.035   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          0.035   PREDICTED: hypothetical protein XP_002342507 
CASKIN1               0.035   CASK interacting protein 1 
SAMD1                 0.034   sterile alpha motif domain containing 1 
C17orf65              0.034   hypothetical protein LOC339201 
GRIN2D                0.032   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100293375          0.032   PREDICTED: hypothetical protein 
RANBP3                0.032   RAN binding protein 3 isoform RANBP3-a 
FLJ37078              0.032   hypothetical protein LOC222183 
LOC728650             0.032   PREDICTED: hypothetical protein 
FAM48B1               0.032   hypothetical protein LOC100130302 
CDKN1C                0.030   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.030   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.030   cyclin-dependent kinase inhibitor 1C isoform a 
TAF4                  0.030   TBP-associated factor 4 
GAS2L1                0.030   growth arrest-specific 2 like 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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