Guide to the Human Genome
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Name: LOC388906 Sequence: fasta or formatted (329aa) NCBI GI: 239752222
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {329aa} PREDICTED: hypothetical protein
alt mRNA {329aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         32           2
 C cysteine            3.3         11           1
 D aspartate           2.4          8           1
 E glutamate           4.0         13           2
 F phenylalanine       1.2          4           1
 G glycine             7.9         26           2
 H histidine           2.7          9           1
 I isoleucine          1.8          6           1
 K lysine              4.0         13           1
 L leucine             7.0         23           3
 M methionine          0.3          1           1
 N asparagine          0.9          3           1
 P proline            18.2         60           4
 Q glutamine           5.5         18           2
 R arginine            9.4         31           2
 S serine             10.6         35           4
 T threonine           5.8         19           2
 V valine              2.4          8           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC388906             1.000   PREDICTED: hypothetical protein 
LOC388906             1.000   PREDICTED: hypothetical protein 
PRB1                  0.062   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.059   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.056   PREDICTED: hypothetical protein FLJ22184 
PRB2                  0.053   proline-rich protein BstNI subfamily 2 
IQSEC2                0.052   IQ motif and Sec7 domain 2 isoform1 
PRG4                  0.050   proteoglycan 4 isoform D 
PRG4                  0.050   proteoglycan 4 isoform C 
PRG4                  0.050   proteoglycan 4 isoform B 
PRG4                  0.050   proteoglycan 4 isoform A 
SYN1                  0.050   synapsin I isoform Ia 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.049   PREDICTED: hypothetical protein LOC80164 
PRB4                  0.046   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB3                  0.046   proline-rich protein BstNI subfamily 3 precursor [H...
SAMD1                 0.044   sterile alpha motif domain containing 1 
SYN1                  0.044   synapsin I isoform Ib 
COL4A4                0.043   alpha 4 type IV collagen precursor 
SCARF2                0.041   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.041   scavenger receptor class F, member 2 isoform 2 [Homo...
TBKBP1                0.040   TBK1 binding protein 1 
PCLO                  0.040   piccolo isoform 2 
PCLO                  0.040   piccolo isoform 1 
WIPF3                 0.040   WAS/WASL interacting protein family, member 3 [Homo...
C9orf75               0.040   hypothetical protein LOC286262 isoform 2 
C9orf75               0.040   hypothetical protein LOC286262 isoform 1 
CASKIN1               0.040   CASK interacting protein 1 
ANKRD33B              0.039   PREDICTED: ankyrin repeat domain 33B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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