Guide to the Human Genome
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Name: LOC653375 Sequence: fasta or formatted (267aa) NCBI GI: 169170558
Description:

PREDICTED: RCC1-like G exchanging factor-like

Referenced in:

Ran and Rag

Other entries for this name:
alt mRNA [267aa] PREDICTED: RCC1-like G exchanging factor-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         15           2
 C cysteine            4.1         11           2
 D aspartate           4.5         12           1
 E glutamate           4.9         13           1
 F phenylalanine       4.1         11           1
 G glycine            14.6         39           2
 H histidine           2.6          7           1
 I isoleucine          3.7         10           1
 K lysine              3.0          8           1
 L leucine             7.9         21           1
 M methionine          1.9          5           1
 N asparagine          4.5         12           2
 P proline             3.7         10           2
 Q glutamine           4.5         12           1
 R arginine            4.1         11           1
 S serine              6.0         16           2
 T threonine           4.9         13           1
 V valine             10.5         28           2
 W tryptophan          1.9          5           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: RCC1-like G exchanging factor-like [Homo... 
LOC653375             1.000   PREDICTED: RCC1-like G exchanging factor-like [Homo...
WBSCR16               0.996   Williams-Beuren syndrome chromosome region 16 
HERC3                 0.175   hect domain and RLD 3 
HERC4                 0.149   hect domain and RLD 4 isoform b 
HERC4                 0.149   hect domain and RLD 4 isoform a 
RCBTB2                0.123   regulator of chromosome condensation and BTB domain c...
HERC6                 0.115   hect domain and RLD 6 
HERC5                 0.115   hect domain and RLD 5 
HERC2                 0.113   hect domain and RLD 2 
RCBTB1                0.113   regulator of chromosome condensation (RCC1) and BTB ...
HERC1                 0.110   guanine nucleotide exchange factor p532 
RPGR                  0.097   retinitis pigmentosa GTPase regulator isoform A [Homo...
RPGR                  0.097   retinitis pigmentosa GTPase regulator isoform C [Hom...
SERGEF                0.097   deafness locus associated putative guanine nucleotide...
RCC2                  0.084   regulator of chromosome condensation 2 
RCC2                  0.084   regulator of chromosome condensation 2 
NEK8                  0.074   NIMA-related kinase 8 
NEK9                  0.071   NIMA-related kinase 9 
RCC1                  0.061   regulator of chromosome condensation 1 isoform b [H...
RCC1                  0.061   regulator of chromosome condensation 1 isoform a [H...
RCC1                  0.061   regulator of chromosome condensation 1 isoform c [Hom...
SNHG3-RCC1            0.061   regulator of chromosome condensation 1 
SNHG3-RCC1            0.061   regulator of chromosome condensation 1 
SNHG3-RCC1            0.061   regulator of chromosome condensation 1 
IBTK                  0.061   inhibitor of Bruton's tyrosine kinase 
RCCD1                 0.054   RCC1 domain containing 1 
RCCD1                 0.054   RCC1 domain containing 1 
LOC100290629          0.045   PREDICTED: hypothetical protein XP_002347563 
LOC390561             0.043   PREDICTED: similar to hect domain and RLD 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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