Guide to the Human Genome
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Name: RCBTB2 Sequence: fasta or formatted (551aa) NCBI GI: 4557445
Description:

regulator of chromosome condensation and BTB domain containing protein 2

Referenced in:

Additional Interaction Domain Families
Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         37           2
 C cysteine            4.2         23           2
 D aspartate           4.7         26           2
 E glutamate           6.2         34           3
 F phenylalanine       3.8         21           1
 G glycine             8.7         48           2
 H histidine           2.9         16           1
 I isoleucine          4.4         24           2
 K lysine              4.0         22           2
 L leucine             9.6         53           2
 M methionine          1.3          7           1
 N asparagine          4.9         27           2
 P proline             3.3         18           1
 Q glutamine           4.5         25           2
 R arginine            3.4         19           2
 S serine              7.4         41           2
 T threonine           6.7         37           2
 V valine              8.3         46           3
 W tryptophan          1.3          7           1
 Y tyrosine            3.6         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulator of chromosome condensation and BTB domain c... 
RCBTB1                0.691   regulator of chromosome condensation (RCC1) and BTB ...
HERC1                 0.115   guanine nucleotide exchange factor p532 
HERC2                 0.114   hect domain and RLD 2 
HERC3                 0.113   hect domain and RLD 3 
HERC4                 0.112   hect domain and RLD 4 isoform b 
HERC4                 0.112   hect domain and RLD 4 isoform a 
RPGR                  0.103   retinitis pigmentosa GTPase regulator isoform A [Homo...
RPGR                  0.103   retinitis pigmentosa GTPase regulator isoform C [Hom...
HERC5                 0.098   hect domain and RLD 5 
HERC6                 0.094   hect domain and RLD 6 
NEK8                  0.086   NIMA-related kinase 8 
RCC2                  0.084   regulator of chromosome condensation 2 
RCC2                  0.084   regulator of chromosome condensation 2 
SERGEF                0.071   deafness locus associated putative guanine nucleotide...
LOC100290629          0.069   PREDICTED: hypothetical protein XP_002347563 
LOC390561             0.069   PREDICTED: similar to hect domain and RLD 2 
NEK9                  0.069   NIMA-related kinase 9 
WBSCR16               0.068   Williams-Beuren syndrome chromosome region 16 
LOC390561             0.067   PREDICTED: similar to hect domain and RLD 2 
LOC653375             0.060   PREDICTED: RCC1-like G exchanging factor-like [Homo...
LOC653375             0.060   PREDICTED: RCC1-like G exchanging factor-like [Homo...
RCCD1                 0.059   RCC1 domain containing 1 
RCCD1                 0.059   RCC1 domain containing 1 
RCC1                  0.052   regulator of chromosome condensation 1 isoform b [H...
RCC1                  0.052   regulator of chromosome condensation 1 isoform a [H...
RCC1                  0.052   regulator of chromosome condensation 1 isoform c [Hom...
SNHG3-RCC1            0.052   regulator of chromosome condensation 1 
SNHG3-RCC1            0.052   regulator of chromosome condensation 1 
SNHG3-RCC1            0.052   regulator of chromosome condensation 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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