Guide to the Human Genome
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Name: SNHG3-RCC1 Sequence: fasta or formatted (421aa) NCBI GI: 114796640
Description:

regulator of chromosome condensation 1

Referenced in:

Ran and Rag

Other entries for this name:
alt mRNA [421aa] regulator of chromosome condensation 1
alt mRNA [421aa] regulator of chromosome condensation 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         25           2
 C cysteine            1.9          8           1
 D aspartate           4.5         19           2
 E glutamate           5.9         25           2
 F phenylalanine       3.1         13           1
 G glycine            13.1         55           2
 H histidine           2.9         12           2
 I isoleucine          1.9          8           1
 K lysine              5.7         24           2
 L leucine             8.8         37           2
 M methionine          2.9         12           2
 N asparagine          2.6         11           2
 P proline             4.3         18           2
 Q glutamine           4.8         20           1
 R arginine            4.8         20           2
 S serine              9.0         38           2
 T threonine           4.5         19           1
 V valine             10.5         44           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulator of chromosome condensation 1 
RCC1                  1.000   regulator of chromosome condensation 1 isoform c [Hom...
SNHG3-RCC1            1.000   regulator of chromosome condensation 1 
SNHG3-RCC1            1.000   regulator of chromosome condensation 1 
RCC1                  0.988   regulator of chromosome condensation 1 isoform b [H...
RCC1                  0.981   regulator of chromosome condensation 1 isoform a [H...
HERC4                 0.142   hect domain and RLD 4 isoform b 
HERC4                 0.142   hect domain and RLD 4 isoform a 
RPGR                  0.135   retinitis pigmentosa GTPase regulator isoform A [Homo...
RPGR                  0.135   retinitis pigmentosa GTPase regulator isoform C [Hom...
HERC3                 0.130   hect domain and RLD 3 
HERC2                 0.120   hect domain and RLD 2 
NEK9                  0.102   NIMA-related kinase 9 
RCC2                  0.096   regulator of chromosome condensation 2 
RCC2                  0.096   regulator of chromosome condensation 2 
HERC1                 0.091   guanine nucleotide exchange factor p532 
HERC6                 0.088   hect domain and RLD 6 
SERGEF                0.087   deafness locus associated putative guanine nucleotide...
RCBTB1                0.078   regulator of chromosome condensation (RCC1) and BTB ...
WBSCR16               0.075   Williams-Beuren syndrome chromosome region 16 
RCBTB2                0.070   regulator of chromosome condensation and BTB domain c...
NEK8                  0.068   NIMA-related kinase 8 
HERC5                 0.067   hect domain and RLD 5 
LOC653375             0.055   PREDICTED: RCC1-like G exchanging factor-like [Homo...
LOC653375             0.055   PREDICTED: RCC1-like G exchanging factor-like [Homo...
RCCD1                 0.053   RCC1 domain containing 1 
RCCD1                 0.053   RCC1 domain containing 1 
LOC390561             0.042   PREDICTED: similar to hect domain and RLD 2 
LOC100290629          0.042   PREDICTED: hypothetical protein XP_002347563 
LOC390561             0.042   PREDICTED: similar to hect domain and RLD 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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