SNHG3-RCC1 1433

Name: SNHG3-RCC1	Sequence: fasta or formatted (421aa)		NCBI GI: 114796640
Description: regulator of chromosome condensation 1		Referenced in: Ran and Rag
Other entries for this name: alt mRNA [421aa] regulator of chromosome condensation 1 alt mRNA [421aa] regulator of chromosome condensation 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 25 2 C cysteine 1.9 8 1 D aspartate 4.5 19 2 E glutamate 5.9 25 2 F phenylalanine 3.1 13 1 G glycine 13.1 55 2 H histidine 2.9 12 2 I isoleucine 1.9 8 1 K lysine 5.7 24 2 L leucine 8.8 37 2 M methionine 2.9 12 2 N asparagine 2.6 11 2 P proline 4.3 18 2 Q glutamine 4.8 20 1 R arginine 4.8 20 2 S serine 9.0 38 2 T threonine 4.5 19 1 V valine 10.5 44 2 W tryptophan 1.0 4 1 Y tyrosine 2.1 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 regulator of chromosome condensation 1 RCC1 1.000 regulator of chromosome condensation 1 isoform c [Hom... SNHG3-RCC1 1.000 regulator of chromosome condensation 1 SNHG3-RCC1 1.000 regulator of chromosome condensation 1 RCC1 0.988 regulator of chromosome condensation 1 isoform b [H... RCC1 0.981 regulator of chromosome condensation 1 isoform a [H... HERC4 0.142 hect domain and RLD 4 isoform b HERC4 0.142 hect domain and RLD 4 isoform a RPGR 0.135 retinitis pigmentosa GTPase regulator isoform A [Homo... RPGR 0.135 retinitis pigmentosa GTPase regulator isoform C [Hom... HERC3 0.130 hect domain and RLD 3 HERC2 0.120 hect domain and RLD 2 NEK9 0.102 NIMA-related kinase 9 RCC2 0.096 regulator of chromosome condensation 2 RCC2 0.096 regulator of chromosome condensation 2 HERC1 0.091 guanine nucleotide exchange factor p532 HERC6 0.088 hect domain and RLD 6 SERGEF 0.087 deafness locus associated putative guanine nucleotide... RCBTB1 0.078 regulator of chromosome condensation (RCC1) and BTB ... WBSCR16 0.075 Williams-Beuren syndrome chromosome region 16 RCBTB2 0.070 regulator of chromosome condensation and BTB domain c... NEK8 0.068 NIMA-related kinase 8 HERC5 0.067 hect domain and RLD 5 LOC653375 0.055 PREDICTED: RCC1-like G exchanging factor-like [Homo... LOC653375 0.055 PREDICTED: RCC1-like G exchanging factor-like [Homo... RCCD1 0.053 RCC1 domain containing 1 RCCD1 0.053 RCC1 domain containing 1 LOC390561 0.042 PREDICTED: similar to hect domain and RLD 2 LOC100290629 0.042 PREDICTED: hypothetical protein XP_002347563 LOC390561 0.042 PREDICTED: similar to hect domain and RLD 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.