Guide to the Human Genome
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Name: RCBTB1 Sequence: fasta or formatted (531aa) NCBI GI: 57242759
Description:

regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

Referenced in:

Additional Interaction Domain Families
Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         44           2
 C cysteine            3.8         20           1
 D aspartate           4.3         23           2
 E glutamate           5.5         29           2
 F phenylalanine       4.3         23           1
 G glycine             8.7         46           2
 H histidine           3.6         19           2
 I isoleucine          4.3         23           2
 K lysine              5.3         28           2
 L leucine             9.2         49           2
 M methionine          1.5          8           1
 N asparagine          5.3         28           2
 P proline             3.0         16           2
 Q glutamine           4.1         22           1
 R arginine            2.6         14           1
 S serine              6.4         34           2
 T threonine           6.0         32           2
 V valine              8.3         44           2
 W tryptophan          1.7          9           1
 Y tyrosine            3.8         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulator of chromosome condensation (RCC1) and BTB ... 
RCBTB2                0.713   regulator of chromosome condensation and BTB domain c...
HERC4                 0.118   hect domain and RLD 4 isoform b 
HERC4                 0.118   hect domain and RLD 4 isoform a 
HERC3                 0.113   hect domain and RLD 3 
HERC2                 0.112   hect domain and RLD 2 
HERC1                 0.107   guanine nucleotide exchange factor p532 
RPGR                  0.099   retinitis pigmentosa GTPase regulator isoform A [Homo...
RPGR                  0.099   retinitis pigmentosa GTPase regulator isoform C [Hom...
HERC5                 0.095   hect domain and RLD 5 
HERC6                 0.093   hect domain and RLD 6 
RCC2                  0.082   regulator of chromosome condensation 2 
RCC2                  0.082   regulator of chromosome condensation 2 
SERGEF                0.073   deafness locus associated putative guanine nucleotide...
NEK8                  0.072   NIMA-related kinase 8 
NEK9                  0.069   NIMA-related kinase 9 
WBSCR16               0.063   Williams-Beuren syndrome chromosome region 16 
RCC1                  0.060   regulator of chromosome condensation 1 isoform b [H...
RCC1                  0.060   regulator of chromosome condensation 1 isoform a [H...
RCC1                  0.060   regulator of chromosome condensation 1 isoform c [Hom...
SNHG3-RCC1            0.060   regulator of chromosome condensation 1 
SNHG3-RCC1            0.060   regulator of chromosome condensation 1 
SNHG3-RCC1            0.060   regulator of chromosome condensation 1 
LOC390561             0.057   PREDICTED: similar to hect domain and RLD 2 
LOC653375             0.057   PREDICTED: RCC1-like G exchanging factor-like [Homo...
LOC653375             0.057   PREDICTED: RCC1-like G exchanging factor-like [Homo...
LOC100290629          0.057   PREDICTED: hypothetical protein XP_002347563 
LOC390561             0.055   PREDICTED: similar to hect domain and RLD 2 
ALS2                  0.053   alsin isoform 2 
ALS2                  0.053   alsin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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