Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HERC5 Sequence: fasta or formatted (1024aa) NCBI GI: 110825982
Description:

hect domain and RLD 5

Referenced in:

Cyclins and Related Functions
Ran and Rag
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         52           3
 C cysteine            2.4         25           2
 D aspartate           4.2         43           2
 E glutamate           7.7         79           3
 F phenylalanine       5.7         58           3
 G glycine             6.5         67           2
 H histidine           2.7         28           1
 I isoleucine          4.6         47           2
 K lysine              7.3         75           3
 L leucine            11.4        117           2
 M methionine          2.6         27           2
 N asparagine          5.1         52           3
 P proline             3.9         40           2
 Q glutamine           4.1         42           1
 R arginine            4.8         49           2
 S serine              6.9         71           3
 T threonine           4.9         50           3
 V valine              5.6         57           2
 W tryptophan          1.8         18           1
 Y tyrosine            2.6         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hect domain and RLD 5 
HERC6                 0.441   hect domain and RLD 6 
HERC4                 0.295   hect domain and RLD 4 isoform a 
HERC4                 0.294   hect domain and RLD 4 isoform b 
HERC3                 0.288   hect domain and RLD 3 
UBE3A                 0.099   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.099   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.099   ubiquitin protein ligase E3A isoform 2 
HECTD2                0.085   HECT domain containing 2 isoform a 
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally dow...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
NEDD4L                0.069   neural precursor cell expressed, developmentally do...
HECW2                 0.068   HECT, C2 and WW domain containing E3 ubiquitin prote...
NEDD4                 0.067   neural precursor cell expressed, developmentally do...
NEDD4                 0.067   neural precursor cell expressed, developmentally do...
ITCH                  0.063   itchy homolog E3 ubiquitin protein ligase 
HECW1                 0.063   NEDD4-like ubiquitin-protein ligase 1 
SMURF2                0.061   SMAD specific E3 ubiquitin protein ligase 2 
SMURF1                0.059   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.059   Smad ubiquitination regulatory factor 1 isoform 2 [H...
HERC2                 0.058   hect domain and RLD 2 
HERC1                 0.055   guanine nucleotide exchange factor p532 
WWP2                  0.054   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.054   WW domain containing E3 ubiquitin protein ligase 2 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press