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Search of human proteins with 169169475
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169475 PREDICTED: hypothetical protein [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169475 PREDICTED: hypothetical protein [Homo sapiens] 398 e-111
gi|169169909 PREDICTED: hypothetical protein [Homo sapiens] 395 e-111
gi|169168836 PREDICTED: hypothetical protein [Homo sapiens] 395 e-111
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 43 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 41 7e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 41 7e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 41 7e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 39 0.003
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 39 0.003
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 39 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.004
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.004
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.006
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 37 0.010
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 37 0.010
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.010
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 37 0.010
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 37 0.010
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 37 0.010
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 37 0.013
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 37 0.013
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 37 0.013
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 37 0.013
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 36 0.017
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 36 0.022
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.029
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 35 0.029
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 35 0.029
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 35 0.029
>gi|169169475 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 398 bits (1022), Expect = e-111
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ
Sbjct: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG
Sbjct: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
Query: 121 EGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
EGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG
Sbjct: 121 EGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
Query: 181 LRGRGL 186
LRGRGL
Sbjct: 181 LRGRGL 186
>gi|169169909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 395 bits (1016), Expect = e-111
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ
Sbjct: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG
Sbjct: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
Query: 121 EGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
EGAHLV LGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG
Sbjct: 121 EGAHLVLLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
Query: 181 LRGRGL 186
LRGRGL
Sbjct: 181 LRGRGL 186
>gi|169168836 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 395 bits (1016), Expect = e-111
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ
Sbjct: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG
Sbjct: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
Query: 121 EGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
EGAHLV LGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG
Sbjct: 121 EGAHLVLLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGAASLLDLWSLWVPDG 180
Query: 181 LRGRGL 186
LRGRGL
Sbjct: 181 LRGRGL 186
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 42.7 bits (99), Expect = 2e-04
Identities = 41/121 (33%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQAS-PPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
+G P P G GG G G+ S PPG P G PG+PG P P GP H
Sbjct: 106 LGPPGPP----GLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGH 161
Query: 60 QWLRPRTAT-------FPPG-TWDVGVGSLTKPTGF-----IIGKQISRQKQKPCMRGPA 106
+ P AT PPG G+ PTG+ +GK +K P GPA
Sbjct: 162 PGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGK--DGEKGDPGPPGPA 219
Query: 107 G 107
G
Sbjct: 220 G 220
Score = 31.2 bits (69), Expect = 0.54
Identities = 48/175 (27%), Positives = 67/175 (38%), Gaps = 17/175 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN-QASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P + T +G G + G+ PPG + G G+ G P PLGP +
Sbjct: 187 GMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDR 246
Query: 61 WLRPRTATFPPG----TWDVGVGSLTKPTGFIIGK-QISR--QKQKPCMRGPAGSERSPR 113
P PPG G P GF K + R K P + GP+G P
Sbjct: 247 --GPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMP- 303
Query: 114 PRTGTRGEGAHLVSLGRK-ESGRGGWRSEAWRS--PQVRTLSGAEKENTDTARAG 165
G G+ G+K E+GR G E + P + +G++ E + RAG
Sbjct: 304 ---GKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAG 355
Score = 29.3 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLG 55
PPG+ + + G PG+PG P P G
Sbjct: 39 PPGKPGQDGIDGEAGPPGLPGPPGPKG 65
Score = 27.3 bits (59), Expect = 7.8
Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P + + RG G+L G PPG GS G PG P P G
Sbjct: 373 GMPGERGEAGHRGSAGALGPQG-----PPGAPGVRGFQGQKGSMGDPGLPGPQG------ 421
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSER--SPRPRTGTR 119
LR D G G P G + I+ P +G G P+ +G+R
Sbjct: 422 LRGDVG-------DRGPGGAAGPKG---DQGIAGSDGLPGDKGELGPSGLVGPKGESGSR 471
Query: 120 GE 121
GE
Sbjct: 472 GE 473
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.8 bits (94), Expect = 7e-04
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSA----NPVIQ-------------PVGS 44
G PQ RG G G++ PG PV+ P G
Sbjct: 1087 GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 1146
Query: 45 PGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRG 104
PG G P P GP + + + P GS+ P G +G K +P RG
Sbjct: 1147 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG 1206
Query: 105 PAGSERSPRPRTGTRGE 121
P G P R G +GE
Sbjct: 1207 PPG----PYGRPGYKGE 1219
Score = 35.0 bits (79), Expect = 0.037
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G+P P G G FG N + PG V G PG PG P P GP
Sbjct: 903 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP 957
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 41 PVGSPGMPGHPSPLGP------------CNHQWLRPRTATFPPG-------TWDVGVGSL 81
P G PG PG P P GP W R+A P G D GV L
Sbjct: 1005 PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGL 1064
Query: 82 TKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
G + + P G AG + P+ G+RGE
Sbjct: 1065 PGAKGEVGADGVPGFPGLPGREGIAGPQ-GPKGDRGSRGE 1103
Score = 28.9 bits (63), Expect = 2.7
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 29 PPGRHSANPVIQPV--GSPGMPGHPSPLGPCNHQWLR---PRTATFPPG----------- 72
PPGR A P P G PG+P SPLGP P+ PPG
Sbjct: 765 PPGR--AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEP 822
Query: 73 --TWDVGVGSLTKPTGF-----IIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHL 125
+ G T P GF +G + + RGP G + P P G L
Sbjct: 823 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP-PGPSFRHDKL 881
Query: 126 VSLGRKESGRGGWRSEAWRSPQ 147
+ + SG GG EA R P+
Sbjct: 882 TFIDMEGSGFGG-DLEALRGPR 902
Score = 28.1 bits (61), Expect = 4.6
Identities = 34/131 (25%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANP---VIQPVGSP--GMPGHPSPLGPCNHQWLRPRTA 67
RG G +FG + PPG + P G G PG P P GP + +
Sbjct: 1339 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 1398
Query: 68 TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVS 127
PPG G S P +Q P GP G + +G R
Sbjct: 1399 PGPPG--PPGPPSFPGP-----HRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAM 1451
Query: 128 LGRKESGRGGW 138
LG+ GW
Sbjct: 1452 LGQVHEVPEGW 1462
Score = 28.1 bits (61), Expect = 4.6
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 2 GYPAPQAKT----EGRGGNGSLDYFGQNQASPPGRHS-ANPVIQPVGSPGMPGHPSPLGP 56
G P PQ EGR G PPG S P Q + PG PG P P GP
Sbjct: 1380 GPPGPQGPPGIGYEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432
Score = 27.7 bits (60), Expect = 5.9
Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 40/130 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPG----------MPGHP 51
G+ P G G + + G+ PGR N + G PG MPG P
Sbjct: 1203 GFRGPPGPYGRPGYKGEIGFPGR-----PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 1257
Query: 52 SPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
P GP PPGT + + + +P G G++
Sbjct: 1258 GPPGPPG-----------PPGT-------------PVYDSNVFAESSRPGPPGLPGNQGP 1293
Query: 112 PRPRTGTRGE 121
P P+ G +GE
Sbjct: 1294 PGPK-GAKGE 1302
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.8 bits (94), Expect = 7e-04
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSA----NPVIQ-------------PVGS 44
G PQ RG G G++ PG PV+ P G
Sbjct: 672 GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 731
Query: 45 PGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRG 104
PG G P P GP + + + P GS+ P G +G K +P RG
Sbjct: 732 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG 791
Query: 105 PAGSERSPRPRTGTRGE 121
P G P R G +GE
Sbjct: 792 PPG----PYGRPGYKGE 804
Score = 35.0 bits (79), Expect = 0.037
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G+P P G G FG N + PG V G PG PG P P GP
Sbjct: 488 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP 542
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 41 PVGSPGMPGHPSPLGP------------CNHQWLRPRTATFPPG-------TWDVGVGSL 81
P G PG PG P P GP W R+A P G D GV L
Sbjct: 590 PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGL 649
Query: 82 TKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
G + + P G AG + P+ G+RGE
Sbjct: 650 PGAKGEVGADGVPGFPGLPGREGIAGPQ-GPKGDRGSRGE 688
Score = 28.9 bits (63), Expect = 2.7
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 29 PPGRHSANPVIQPV--GSPGMPGHPSPLGPCNHQWLR---PRTATFPPG----------- 72
PPGR A P P G PG+P SPLGP P+ PPG
Sbjct: 350 PPGR--AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEP 407
Query: 73 --TWDVGVGSLTKPTGF-----IIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHL 125
+ G T P GF +G + + RGP G + P P G L
Sbjct: 408 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP-PGPSFRHDKL 466
Query: 126 VSLGRKESGRGGWRSEAWRSPQ 147
+ + SG GG EA R P+
Sbjct: 467 TFIDMEGSGFGG-DLEALRGPR 487
Score = 28.1 bits (61), Expect = 4.6
Identities = 34/131 (25%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANP---VIQPVGSP--GMPGHPSPLGPCNHQWLRPRTA 67
RG G +FG + PPG + P G G PG P P GP + +
Sbjct: 924 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 983
Query: 68 TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVS 127
PPG G S P +Q P GP G + +G R
Sbjct: 984 PGPPG--PPGPPSFPGP-----HRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAM 1036
Query: 128 LGRKESGRGGW 138
LG+ GW
Sbjct: 1037 LGQVHEVPEGW 1047
Score = 28.1 bits (61), Expect = 4.6
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 2 GYPAPQAKT----EGRGGNGSLDYFGQNQASPPGRHS-ANPVIQPVGSPGMPGHPSPLGP 56
G P PQ EGR G PPG S P Q + PG PG P P GP
Sbjct: 965 GPPGPQGPPGIGYEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017
Score = 27.7 bits (60), Expect = 5.9
Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 40/130 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPG----------MPGHP 51
G+ P G G + + G+ PGR N + G PG MPG P
Sbjct: 788 GFRGPPGPYGRPGYKGEIGFPGR-----PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 842
Query: 52 SPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
P GP PPGT + + + +P G G++
Sbjct: 843 GPPGPPG-----------PPGT-------------PVYDSNVFAESSRPGPPGLPGNQGP 878
Query: 112 PRPRTGTRGE 121
P P+ G +GE
Sbjct: 879 PGPK-GAKGE 887
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.8 bits (94), Expect = 7e-04
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSA----NPVIQ-------------PVGS 44
G PQ RG G G++ PG PV+ P G
Sbjct: 852 GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 911
Query: 45 PGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRG 104
PG G P P GP + + + P GS+ P G +G K +P RG
Sbjct: 912 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG 971
Query: 105 PAGSERSPRPRTGTRGE 121
P G P R G +GE
Sbjct: 972 PPG----PYGRPGYKGE 984
Score = 35.0 bits (79), Expect = 0.037
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G+P P G G FG N + PG V G PG PG P P GP
Sbjct: 668 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP 722
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 41 PVGSPGMPGHPSPLGP------------CNHQWLRPRTATFPPG-------TWDVGVGSL 81
P G PG PG P P GP W R+A P G D GV L
Sbjct: 770 PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGL 829
Query: 82 TKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
G + + P G AG + P+ G+RGE
Sbjct: 830 PGAKGEVGADGVPGFPGLPGREGIAGPQ-GPKGDRGSRGE 868
Score = 28.9 bits (63), Expect = 2.7
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 29 PPGRHSANPVIQPV--GSPGMPGHPSPLGPCNHQWLR---PRTATFPPG----------- 72
PPGR A P P G PG+P SPLGP P+ PPG
Sbjct: 530 PPGR--AGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEP 587
Query: 73 --TWDVGVGSLTKPTGF-----IIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHL 125
+ G T P GF +G + + RGP G + P P G L
Sbjct: 588 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP-PGPSFRHDKL 646
Query: 126 VSLGRKESGRGGWRSEAWRSPQ 147
+ + SG GG EA R P+
Sbjct: 647 TFIDMEGSGFGG-DLEALRGPR 667
Score = 28.1 bits (61), Expect = 4.6
Identities = 34/131 (25%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANP---VIQPVGSP--GMPGHPSPLGPCNHQWLRPRTA 67
RG G +FG + PPG + P G G PG P P GP + +
Sbjct: 1104 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 1163
Query: 68 TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVS 127
PPG G S P +Q P GP G + +G R
Sbjct: 1164 PGPPG--PPGPPSFPGP-----HRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAM 1216
Query: 128 LGRKESGRGGW 138
LG+ GW
Sbjct: 1217 LGQVHEVPEGW 1227
Score = 28.1 bits (61), Expect = 4.6
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 2 GYPAPQAKT----EGRGGNGSLDYFGQNQASPPGRHS-ANPVIQPVGSPGMPGHPSPLGP 56
G P PQ EGR G PPG S P Q + PG PG P P GP
Sbjct: 1145 GPPGPQGPPGIGYEGRQGP-------PGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197
Score = 27.7 bits (60), Expect = 5.9
Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 40/130 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPG----------MPGHP 51
G+ P G G + + G+ PGR N + G PG MPG P
Sbjct: 968 GFRGPPGPYGRPGYKGEIGFPGR-----PGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 1022
Query: 52 SPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
P GP PPGT + + + +P G G++
Sbjct: 1023 GPPGPPG-----------PPGT-------------PVYDSNVFAESSRPGPPGLPGNQGP 1058
Query: 112 PRPRTGTRGE 121
P P+ G +GE
Sbjct: 1059 PGPK-GAKGE 1067
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 37/129 (28%)
Query: 2 GYPAPQ--------AKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSP 53
G P PQ A GR GN D SP G+ P G+PG PGHP P
Sbjct: 993 GPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSP-GAPGAPGHPGP 1051
Query: 54 LGPCNHQWLRPRTATFPPG-TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
GP P G + D G P G GPAGS +P
Sbjct: 1052 PGPVG-----------PAGKSGDRGESGPAGPAG---------------APGPAGSRGAP 1085
Query: 113 RPRTGTRGE 121
P+ G RG+
Sbjct: 1086 GPQ-GPRGD 1093
Score = 33.5 bits (75), Expect = 0.11
Identities = 52/184 (28%), Positives = 64/184 (34%), Gaps = 30/184 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQ-------NQASPPGRHSANPVIQPVGSPG---MPGHP 51
G P RG +G+ GQ A PG A + P GSPG PG
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQR 368
Query: 52 SPLGPCNHQWLRPRTATFPPGTWDV-----GVGSLTKPTGFIIGKQISRQKQKPCMRGPA 106
GP H A PPG + G G + P G + + P GPA
Sbjct: 369 GEPGPQGH-----AGAQGPPGPPGINGSPGGKGEM-GPAGIPGAPGLMGARGPP---GPA 419
Query: 107 GSERSPRPRTGTRGEGAHLVSLGRK-ESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAG 165
G+ +P G RG G K E G G R EA P V G + ++ G
Sbjct: 420 GANGAP----GLRGGAGEPGKNGAKGEPGPRGERGEA-GIPGVPGAKGEDGKDGSPGEPG 474
Query: 166 AASL 169
A L
Sbjct: 475 ANGL 478
Score = 32.3 bits (72), Expect = 0.24
Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 25/125 (20%)
Query: 1 MGYPAPQAKTEGRGGNGSLDY-FGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
MG+P P+ G NG G PPG++ G G G P P GP
Sbjct: 578 MGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKN---------GETGPQGPPGPTGPGG- 627
Query: 60 QWLRPRTATFPPGTWDV-GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGT 118
+ T PPG + G+ P G + KP GP G +P G
Sbjct: 628 ----DKGDTGPPGPQGLQGLPGTGGPPG---------ENGKPGEPGPKGDAGAPGAPGGK 674
Query: 119 RGEGA 123
GA
Sbjct: 675 GDAGA 679
Score = 31.2 bits (69), Expect = 0.54
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 11/138 (7%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P PQ +G G G + PG A P G G G P P GP
Sbjct: 1083 GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRG-- 1140
Query: 61 WLRPRTATFPPG----TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRT 116
P + PPG + G P G + P GP G +P P
Sbjct: 1141 ---PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCC 1197
Query: 117 GTRGEGAHLVSLGRKESG 134
G G A + +G +++G
Sbjct: 1198 GGVGAAA-IAGIGGEKAG 1214
Score = 30.8 bits (68), Expect = 0.70
Identities = 33/116 (28%), Positives = 40/116 (34%), Gaps = 20/116 (17%)
Query: 5 APQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRP 64
AP G+G G + PPG N G PG PG P P G C P
Sbjct: 94 APTRPPNGQGPQGP-----KGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Query: 65 RTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
+ + ++DV G G + G GPAG P P GT G
Sbjct: 149 QNYSPQYDSYDVKSG---VAVGGLAG-----------YPGPAGPPGPPGP-PGTSG 189
Score = 30.8 bits (68), Expect = 0.70
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 2 GYPAPQAKTEGRG---GNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
G P PQ RG G G+ + G + PPG + P GSPG G P P G
Sbjct: 852 GPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG 909
Score = 30.4 bits (67), Expect = 0.92
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 31/147 (21%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G NG G+ + PG P G G PG P GP Q
Sbjct: 804 GPPGPAGFPGAPGQNGEPG--GKGERGAPGEKGEGG---PPGVAGPPGGSGPAGPPGPQG 858
Query: 62 LR--------PRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS---ER 110
++ P A FP G L P G P GP+GS +
Sbjct: 859 VKGERGSPGGPGAAGFP------GARGLPGPPG---------SNGNPGPPGPSGSPGKDG 903
Query: 111 SPRPRTGTRGEGAHLVSLGRKESGRGG 137
P P T G+ VS + ++G+ G
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPG 930
Score = 28.5 bits (62), Expect = 3.5
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 21/131 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG----QNQASPPGRHSANPVIQPVGSPG---MPGHPSPL 54
G+P + G NG G + + PG + A + P G+PG PG P
Sbjct: 258 GFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA 317
Query: 55 GPCNHQWLR-----------PRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMR 103
G + R P TA FP G P G Q+ +P +
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAGFPGSP---GAKGEVGPAGSPGSNGAPGQRGEPGPQ 374
Query: 104 GPAGSERSPRP 114
G AG++ P P
Sbjct: 375 GHAGAQGPPGP 385
Score = 28.1 bits (61), Expect = 4.6
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P + G GS Y G PPG P G PG PG P GP
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQG-----PPGEPGQ---AGPSGPPGPPGAIGPSGP 226
Score = 27.3 bits (59), Expect = 7.8
Identities = 35/125 (28%), Positives = 43/125 (34%), Gaps = 29/125 (23%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G G G++ PPG P G+ G PG P GP
Sbjct: 879 GLPGPPGSNGNPGPPGPSGSPGKD--GPPG---------PAGNTGAPGSPGVSGPKGDAG 927
Query: 62 LRPRT----ATFPPGT-WDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRT 116
A PPG +G+ +T G P M GP G SP P+
Sbjct: 928 QPGEKGSPGAQGPPGAPGPLGIAGITGARGL---------AGPPGMPGPRG---SPGPQ- 974
Query: 117 GTRGE 121
G +GE
Sbjct: 975 GVKGE 979
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHP------SPLG 55
G P P + RG +G + G PG ++ P G PG+PG P P G
Sbjct: 494 GLPGPPGEDGERGDDGEIGPRGL-----PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG 548
Query: 56 PCNHQWLRPRTATFPPGTWDV-GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
P L P+ PPG G L P G I + KP + G GS+ P
Sbjct: 549 PKGS--LGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 604
Score = 35.4 bits (80), Expect = 0.029
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-------QNQASPPGRHSANPVIQPVGSPGMPGHPSPL 54
G PQ +G G+ + G Q P G + P+G PG PG P
Sbjct: 1043 GARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA 1102
Query: 55 GPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GP + PPG GVG+L P K + P ++G G + PR
Sbjct: 1103 GPNGADGPQG-----PPG----GVGNLGPPG----EKGEPGESGSPGIQGEPG-VKGPRG 1148
Query: 115 RTGTRGE 121
G +GE
Sbjct: 1149 ERGEKGE 1155
Score = 33.5 bits (75), Expect = 0.11
Identities = 44/163 (26%), Positives = 52/163 (31%), Gaps = 29/163 (17%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQ----NQASPPGR-----HSANPVIQ----------- 40
MG P P G NG+ G PPG S +P IQ
Sbjct: 1090 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1149
Query: 41 -----PVGSPGMPGHPSPLGPCNHQWLR--PRTATFPPGTWDVGVGSLTKPTGFIIGKQI 93
G PG PG P P GP + P FP G G G +
Sbjct: 1150 RGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE 1209
Query: 94 SRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRKESGRG 136
+ +P GP G P P G RG S GR + G+G
Sbjct: 1210 DGEPGQPGSPGPTGENGPPGP-LGKRGPAGSPGSEGR-QGGKG 1250
Score = 31.6 bits (70), Expect = 0.41
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P RG GS G PPGR G G+PG P+GP
Sbjct: 923 GPPGPAGSPGERGAAGSGGPIG-----PPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Score = 30.8 bits (68), Expect = 0.70
Identities = 45/150 (30%), Positives = 59/150 (39%), Gaps = 25/150 (16%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLR----PRTATFPPGTWDVGVGSLTKP 84
PPG PV QP G+ G G P GP H + R PPG +G+ L P
Sbjct: 1023 PPG--PIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG--PIGLQGLPGP 1077
Query: 85 TG-----FIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK----ESGR 135
+G +G P RGPAG + P+ G G +L G K ESG
Sbjct: 1078 SGEKGETGDVGPM--GPPGPPGPRGPAGPNGADGPQ-GPPGGVGNLGPPGEKGEPGESGS 1134
Query: 136 GGWRSEAWRSPQVRTLSGAEKENTDTARAG 165
G + E P V+ G E ++ + G
Sbjct: 1135 PGIQGE----PGVKGPRGERGEKGESGQPG 1160
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
+G P + + G G G PPG + G PG+PG+P GP
Sbjct: 673 VGVPGSRGEDGPEGPKGRTGPTGD--PGPPGLMGEKGKL---GVPGLPGYPGRQGPKGSL 727
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
FP + + G L+ GK R ++ P GP G +R PR TG G
Sbjct: 728 GF----PGFPGASGEKGARGLS-------GKSGPRGERGP--TGPRG-QRGPRGATGKSG 773
Score = 29.6 bits (65), Expect = 1.6
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----------QASPPGRHSANPVIQPVGSPGMPGHP 51
G+P P+ G +G + GQ PPG G G GHP
Sbjct: 800 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 859
Query: 52 SPLGPCNHQWLRPRTA--------TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMR 103
P GP Q L P TA PPG G GF + + P ++
Sbjct: 860 GPPGPPGEQGL-PGTAGKEGTKGDPGPPGA--PGKDGPAGLRGFPGERGLPGTAGGPGLK 916
Query: 104 GPAGSERSPRPRTGTRGEGAHLVSLGRKESGRGG 137
G G P P G+ GE R +G GG
Sbjct: 917 GNEGPSGPPGP-AGSPGE--------RGAAGSGG 941
Score = 29.3 bits (64), Expect = 2.0
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 24/133 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG------ 55
G P+ T G G+ G PPG P G PG G P P G
Sbjct: 761 GQRGPRGATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPG 818
Query: 56 -PCNHQWLRPRTATFPPGTWDV----GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSER 110
P + + T PPG V G T P G ++ P GP G +
Sbjct: 819 HPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMG---------ERGHPGPPGPPGEQG 869
Query: 111 SP--RPRTGTRGE 121
P + GT+G+
Sbjct: 870 LPGTAGKEGTKGD 882
Score = 28.9 bits (63), Expect = 2.7
Identities = 49/172 (28%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 11 EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRT---- 66
+G G ++ G PPG +I P PG+ G+P P+G + R
Sbjct: 296 KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP---PGIQGNPGPVGDPGERGPPGRAGLPG 352
Query: 67 ---ATFPPGT---WDVGVGSLTKPTGFIIGKQISR-----QKQKPCMRGPAGSERSPRPR 115
A PPGT GS G ++ Q ++ Q+ + +RGP G P
Sbjct: 353 SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG----PMGY 408
Query: 116 TGTRGEGAHLVSLGRK-ESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGA 166
TG G S G K ESG G + R PQ L+G + RAGA
Sbjct: 409 TGRPGPLGQPGSPGLKGESGDLG--PQGPRGPQ--GLTGPPGKAGRRGRAGA 456
Score = 28.1 bits (61), Expect = 4.6
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 24/88 (27%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQ----------------PVGSP 45
G P + +G GSL Q + PPG+ P Q P G P
Sbjct: 536 GPPGVRGMDGPQGPKGSLG--PQGEPGPPGQQGT-PGTQGLPGPQGAIGPHGEKGPQGKP 592
Query: 46 GMPGHPSPLGPCNHQWLRPRTATFPPGT 73
G+PG P GP H PPGT
Sbjct: 593 GLPGMPGSDGPPGHPGKEG-----PPGT 615
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHP------SPLG 55
G P P + RG +G + G PG ++ P G PG+PG P P G
Sbjct: 473 GLPGPPGEDGERGDDGEIGPRGL-----PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG 527
Query: 56 PCNHQWLRPRTATFPPGTWDV-GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
P L P+ PPG G L P G I + KP + G GS+ P
Sbjct: 528 PKGS--LGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 583
Score = 35.4 bits (80), Expect = 0.029
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-------QNQASPPGRHSANPVIQPVGSPGMPGHPSPL 54
G PQ +G G+ + G Q P G + P+G PG PG P
Sbjct: 1022 GARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA 1081
Query: 55 GPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GP + PPG GVG+L P K + P ++G G + PR
Sbjct: 1082 GPNGADGPQG-----PPG----GVGNLGPPG----EKGEPGESGSPGIQGEPG-VKGPRG 1127
Query: 115 RTGTRGE 121
G +GE
Sbjct: 1128 ERGEKGE 1134
Score = 33.5 bits (75), Expect = 0.11
Identities = 44/163 (26%), Positives = 52/163 (31%), Gaps = 29/163 (17%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQ----NQASPPGR-----HSANPVIQ----------- 40
MG P P G NG+ G PPG S +P IQ
Sbjct: 1069 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1128
Query: 41 -----PVGSPGMPGHPSPLGPCNHQWLR--PRTATFPPGTWDVGVGSLTKPTGFIIGKQI 93
G PG PG P P GP + P FP G G G +
Sbjct: 1129 RGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE 1188
Query: 94 SRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRKESGRG 136
+ +P GP G P P G RG S GR + G+G
Sbjct: 1189 DGEPGQPGSPGPTGENGPPGP-LGKRGPAGSPGSEGR-QGGKG 1229
Score = 31.6 bits (70), Expect = 0.41
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P RG GS G PPGR G G+PG P+GP
Sbjct: 902 GPPGPAGSPGERGAAGSGGPIG-----PPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Score = 30.8 bits (68), Expect = 0.70
Identities = 45/150 (30%), Positives = 59/150 (39%), Gaps = 25/150 (16%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLR----PRTATFPPGTWDVGVGSLTKP 84
PPG PV QP G+ G G P GP H + R PPG +G+ L P
Sbjct: 1002 PPG--PIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG--PIGLQGLPGP 1056
Query: 85 TG-----FIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK----ESGR 135
+G +G P RGPAG + P+ G G +L G K ESG
Sbjct: 1057 SGEKGETGDVGPM--GPPGPPGPRGPAGPNGADGPQ-GPPGGVGNLGPPGEKGEPGESGS 1113
Query: 136 GGWRSEAWRSPQVRTLSGAEKENTDTARAG 165
G + E P V+ G E ++ + G
Sbjct: 1114 PGIQGE----PGVKGPRGERGEKGESGQPG 1139
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
+G P + + G G G PPG + G PG+PG+P GP
Sbjct: 652 VGVPGSRGEDGPEGPKGRTGPTGD--PGPPGLMGEKGKL---GVPGLPGYPGRQGPKGSL 706
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
FP + + G L+ GK R ++ P GP G +R PR TG G
Sbjct: 707 GF----PGFPGASGEKGARGLS-------GKSGPRGERGP--TGPRG-QRGPRGATGKSG 752
Score = 29.6 bits (65), Expect = 1.6
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----------QASPPGRHSANPVIQPVGSPGMPGHP 51
G+P P+ G +G + GQ PPG G G GHP
Sbjct: 779 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 838
Query: 52 SPLGPCNHQWLRPRTA--------TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMR 103
P GP Q L P TA PPG G GF + + P ++
Sbjct: 839 GPPGPPGEQGL-PGTAGKEGTKGDPGPPGA--PGKDGPAGLRGFPGERGLPGTAGGPGLK 895
Query: 104 GPAGSERSPRPRTGTRGEGAHLVSLGRKESGRGG 137
G G P P G+ GE R +G GG
Sbjct: 896 GNEGPSGPPGP-AGSPGE--------RGAAGSGG 920
Score = 29.3 bits (64), Expect = 2.0
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 24/133 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG------ 55
G P+ T G G+ G PPG P G PG G P P G
Sbjct: 740 GQRGPRGATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPG 797
Query: 56 -PCNHQWLRPRTATFPPGTWDV----GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSER 110
P + + T PPG V G T P G ++ P GP G +
Sbjct: 798 HPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMG---------ERGHPGPPGPPGEQG 848
Query: 111 SP--RPRTGTRGE 121
P + GT+G+
Sbjct: 849 LPGTAGKEGTKGD 861
Score = 28.9 bits (63), Expect = 2.7
Identities = 49/172 (28%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 11 EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRT---- 66
+G G ++ G PPG +I P PG+ G+P P+G + R
Sbjct: 275 KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP---PGIQGNPGPVGDPGERGPPGRAGLPG 331
Query: 67 ---ATFPPGT---WDVGVGSLTKPTGFIIGKQISR-----QKQKPCMRGPAGSERSPRPR 115
A PPGT GS G ++ Q ++ Q+ + +RGP G P
Sbjct: 332 SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG----PMGY 387
Query: 116 TGTRGEGAHLVSLGRK-ESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGA 166
TG G S G K ESG G + R PQ L+G + RAGA
Sbjct: 388 TGRPGPLGQPGSPGLKGESGDLG--PQGPRGPQ--GLTGPPGKAGRRGRAGA 435
Score = 28.1 bits (61), Expect = 4.6
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 24/88 (27%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQ----------------PVGSP 45
G P + +G GSL Q + PPG+ P Q P G P
Sbjct: 515 GPPGVRGMDGPQGPKGSLG--PQGEPGPPGQQGT-PGTQGLPGPQGAIGPHGEKGPQGKP 571
Query: 46 GMPGHPSPLGPCNHQWLRPRTATFPPGT 73
G+PG P GP H PPGT
Sbjct: 572 GLPGMPGSDGPPGHPGKEG-----PPGT 594
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHP------SPLG 55
G P P + RG +G + G PG ++ P G PG+PG P P G
Sbjct: 580 GLPGPPGEDGERGDDGEIGPRGL-----PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG 634
Query: 56 PCNHQWLRPRTATFPPGTWDV-GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
P L P+ PPG G L P G I + KP + G GS+ P
Sbjct: 635 PKGS--LGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 690
Score = 35.4 bits (80), Expect = 0.029
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-------QNQASPPGRHSANPVIQPVGSPGMPGHPSPL 54
G PQ +G G+ + G Q P G + P+G PG PG P
Sbjct: 1129 GARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA 1188
Query: 55 GPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GP + PPG GVG+L P K + P ++G G + PR
Sbjct: 1189 GPNGADGPQG-----PPG----GVGNLGPPG----EKGEPGESGSPGIQGEPG-VKGPRG 1234
Query: 115 RTGTRGE 121
G +GE
Sbjct: 1235 ERGEKGE 1241
Score = 33.5 bits (75), Expect = 0.11
Identities = 44/163 (26%), Positives = 52/163 (31%), Gaps = 29/163 (17%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQ----NQASPPGR-----HSANPVIQ----------- 40
MG P P G NG+ G PPG S +P IQ
Sbjct: 1176 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1235
Query: 41 -----PVGSPGMPGHPSPLGPCNHQWLR--PRTATFPPGTWDVGVGSLTKPTGFIIGKQI 93
G PG PG P P GP + P FP G G G +
Sbjct: 1236 RGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGE 1295
Query: 94 SRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRKESGRG 136
+ +P GP G P P G RG S GR + G+G
Sbjct: 1296 DGEPGQPGSPGPTGENGPPGP-LGKRGPAGSPGSEGR-QGGKG 1336
Score = 31.6 bits (70), Expect = 0.41
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P RG GS G PPGR G G+PG P+GP
Sbjct: 1009 GPPGPAGSPGERGAAGSGGPIG-----PPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058
Score = 30.8 bits (68), Expect = 0.70
Identities = 45/150 (30%), Positives = 59/150 (39%), Gaps = 25/150 (16%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLR----PRTATFPPGTWDVGVGSLTKP 84
PPG PV QP G+ G G P GP H + R PPG +G+ L P
Sbjct: 1109 PPG--PIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG--PIGLQGLPGP 1163
Query: 85 TG-----FIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK----ESGR 135
+G +G P RGPAG + P+ G G +L G K ESG
Sbjct: 1164 SGEKGETGDVGPM--GPPGPPGPRGPAGPNGADGPQ-GPPGGVGNLGPPGEKGEPGESGS 1220
Query: 136 GGWRSEAWRSPQVRTLSGAEKENTDTARAG 165
G + E P V+ G E ++ + G
Sbjct: 1221 PGIQGE----PGVKGPRGERGEKGESGQPG 1246
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
+G P + + G G G PPG + G PG+PG+P GP
Sbjct: 759 VGVPGSRGEDGPEGPKGRTGPTGD--PGPPGLMGEKGKL---GVPGLPGYPGRQGPKGSL 813
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
FP + + G L+ GK R ++ P GP G +R PR TG G
Sbjct: 814 GF----PGFPGASGEKGARGLS-------GKSGPRGERGP--TGPRG-QRGPRGATGKSG 859
Score = 29.6 bits (65), Expect = 1.6
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----------QASPPGRHSANPVIQPVGSPGMPGHP 51
G+P P+ G +G + GQ PPG G G GHP
Sbjct: 886 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHP 945
Query: 52 SPLGPCNHQWLRPRTA--------TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMR 103
P GP Q L P TA PPG G GF + + P ++
Sbjct: 946 GPPGPPGEQGL-PGTAGKEGTKGDPGPPGA--PGKDGPAGLRGFPGERGLPGTAGGPGLK 1002
Query: 104 GPAGSERSPRPRTGTRGEGAHLVSLGRKESGRGG 137
G G P P G+ GE R +G GG
Sbjct: 1003 GNEGPSGPPGP-AGSPGE--------RGAAGSGG 1027
Score = 29.3 bits (64), Expect = 2.0
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 24/133 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG------ 55
G P+ T G G+ G PPG P G PG G P P G
Sbjct: 847 GQRGPRGATGKSGAKGTSG--GDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPG 904
Query: 56 -PCNHQWLRPRTATFPPGTWDV----GVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSER 110
P + + T PPG V G T P G ++ P GP G +
Sbjct: 905 HPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMG---------ERGHPGPPGPPGEQG 955
Query: 111 SP--RPRTGTRGE 121
P + GT+G+
Sbjct: 956 LPGTAGKEGTKGD 968
Score = 28.9 bits (63), Expect = 2.7
Identities = 49/172 (28%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 11 EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRT---- 66
+G G ++ G PPG +I P PG+ G+P P+G + R
Sbjct: 382 KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP---PGIQGNPGPVGDPGERGPPGRAGLPG 438
Query: 67 ---ATFPPGT---WDVGVGSLTKPTGFIIGKQISR-----QKQKPCMRGPAGSERSPRPR 115
A PPGT GS G ++ Q ++ Q+ + +RGP G P
Sbjct: 439 SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG----PMGY 494
Query: 116 TGTRGEGAHLVSLGRK-ESGRGGWRSEAWRSPQVRTLSGAEKENTDTARAGA 166
TG G S G K ESG G + R PQ L+G + RAGA
Sbjct: 495 TGRPGPLGQPGSPGLKGESGDLG--PQGPRGPQ--GLTGPPGKAGRRGRAGA 542
Score = 28.1 bits (61), Expect = 4.6
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 24/88 (27%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQ----------------PVGSP 45
G P + +G GSL Q + PPG+ P Q P G P
Sbjct: 622 GPPGVRGMDGPQGPKGSLG--PQGEPGPPGQQGT-PGTQGLPGPQGAIGPHGEKGPQGKP 678
Query: 46 GMPGHPSPLGPCNHQWLRPRTATFPPGT 73
G+PG P GP H PPGT
Sbjct: 679 GLPGMPGSDGPPGHPGKEG-----PPGT 701
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.1 bits (87), Expect = 0.004
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P PQ T G G+ + PPG VG PG G+P P GP
Sbjct: 870 GAPGPQGPTGVTGPKGA-----RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 924
Query: 62 ----LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR-- 115
R + PPG G L P G +K +P GP+G+E P P+
Sbjct: 925 KDGPKGARGDSGPPGR--AGEPGLQGPAG------PPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 116 TGTRGEGAHLVSLGRKESGRG 136
G RG +V L + RG
Sbjct: 977 AGQRG----IVGLPGQRGERG 993
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/124 (27%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G G G+ G+ A P G P G PG PG P P G +
Sbjct: 354 GPPGPVGPAGGPGFPGAPGAKGE--AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN-- 409
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS-----PRPRT 116
P T P G + GF P RGP G + + P+ +T
Sbjct: 410 --PGTDGIPGAKGSAGAPGIAGAPGF------------PGPRGPPGPQGATGPLGPKGQT 455
Query: 117 GTRG 120
G G
Sbjct: 456 GEPG 459
Score = 36.6 bits (83), Expect = 0.013
Identities = 34/121 (28%), Positives = 42/121 (34%), Gaps = 15/121 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP----- 56
G P P + G NG G PPG + P G PG PG P P GP
Sbjct: 1164 GPPGPVGPSGKDGANGIPGPIG-----PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGI 1218
Query: 57 --CNHQWLRPRTATFPPGTW---DVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
L PR P + D G L + + S Q +R P GS ++
Sbjct: 1219 DMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKN 1278
Query: 112 P 112
P
Sbjct: 1279 P 1279
Score = 31.6 bits (70), Expect = 0.41
Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 24/120 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQA-SPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P PQ +G G G+ A P GR G PG PG+P P GP
Sbjct: 120 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD---------GEPGTPGNPGPPGPPG-- 168
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
PPG +G + G K + Q M+GP G PR G G
Sbjct: 169 ---------PPGPPGLGGNFAAQMAGGFDEK--AGGAQLGVMQGPMG-PMGPRGPPGPAG 216
Score = 30.0 bits (66), Expect = 1.2
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 31/145 (21%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFI 88
PPG A G+PG PG P GP + PR PPG KP
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGP-----MGPRGPPGPPG----------KPGD-- 253
Query: 89 IGKQISRQKQKPCMRGPAGSERSPRPRTGTRG----EGAHLVSLGRKESGRGGWRSEAWR 144
+ KP G AG ER P G RG G V R G G + EA
Sbjct: 254 -----DGEAGKP---GKAG-ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA-G 303
Query: 145 SPQVRTLSGAEKENTDTARAGAASL 169
+P V+ SG+ EN G L
Sbjct: 304 APGVKGESGSPGENGSPGPMGPRGL 328
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 12 GRGGNGSLDYFGQNQASPPGRHSANPV---------IQPVGSPGMPGHPSPLGPCNHQ 60
GR G+ D PPGR A V + G+PG PG P P GP Q
Sbjct: 1035 GREGSPGAD-------GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/133 (30%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 2 GYPAPQAK-----TEGRGG-NGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
G P PQ T G G G Y G + A G A V GSPG G P P+G
Sbjct: 267 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK--GEAGAPGVKGESGSPGENGSPGPMG 324
Query: 56 PCNHQWLRPRTATFPPGT-------WDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS 108
P R RT P G G P G G GP G+
Sbjct: 325 PRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 109 ERSPRPRTGTRGE 121
R P G RGE
Sbjct: 383 -RGPEGAQGPRGE 394
Score = 28.5 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P + +G G+ PPG + P G PG G P GP
Sbjct: 996 GLPGPSGEPGKQGAPGA-----SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Score = 28.1 bits (61), Expect = 4.6
Identities = 36/137 (26%), Positives = 41/137 (29%), Gaps = 24/137 (17%)
Query: 13 RGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATF-P 70
RG G + G Q PPG P G G G P P+GP P
Sbjct: 1127 RGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGP 1186
Query: 71 PGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP--------RTGTRGEG 122
PG G T P G P GP G P P G R +G
Sbjct: 1187 PG--PRGRSGETGPAG------------PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1232
Query: 123 AHLVSLGRKESGRGGWR 139
+ R + GG R
Sbjct: 1233 PDPLQYMRADQAAGGLR 1249
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.1 bits (87), Expect = 0.004
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P PQ T G G+ + PPG VG PG G+P P GP
Sbjct: 801 GAPGPQGPTGVTGPKGA-----RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 855
Query: 62 ----LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR-- 115
R + PPG G L P G +K +P GP+G+E P P+
Sbjct: 856 KDGPKGARGDSGPPGR--AGEPGLQGPAG------PPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 116 TGTRGEGAHLVSLGRKESGRG 136
G RG +V L + RG
Sbjct: 908 AGQRG----IVGLPGQRGERG 924
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/124 (27%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G G G+ G+ A P G P G PG PG P P G +
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGE--AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN-- 340
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS-----PRPRT 116
P T P G + GF P RGP G + + P+ +T
Sbjct: 341 --PGTDGIPGAKGSAGAPGIAGAPGF------------PGPRGPPGPQGATGPLGPKGQT 386
Query: 117 GTRG 120
G G
Sbjct: 387 GEPG 390
Score = 36.6 bits (83), Expect = 0.013
Identities = 34/121 (28%), Positives = 42/121 (34%), Gaps = 15/121 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP----- 56
G P P + G NG G PPG + P G PG PG P P GP
Sbjct: 1095 GPPGPVGPSGKDGANGIPGPIG-----PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGI 1149
Query: 57 --CNHQWLRPRTATFPPGTW---DVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
L PR P + D G L + + S Q +R P GS ++
Sbjct: 1150 DMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKN 1209
Query: 112 P 112
P
Sbjct: 1210 P 1210
Score = 31.6 bits (70), Expect = 0.41
Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 24/120 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQA-SPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P PQ +G G G+ A P GR G PG PG+P P GP
Sbjct: 51 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD---------GEPGTPGNPGPPGPPG-- 99
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
PPG +G + G K + Q M+GP G PR G G
Sbjct: 100 ---------PPGPPGLGGNFAAQMAGGFDEK--AGGAQLGVMQGPMG-PMGPRGPPGPAG 147
Score = 30.0 bits (66), Expect = 1.2
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 31/145 (21%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFI 88
PPG A G+PG PG P GP + PR PPG KP
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGP-----MGPRGPPGPPG----------KPGD-- 184
Query: 89 IGKQISRQKQKPCMRGPAGSERSPRPRTGTRG----EGAHLVSLGRKESGRGGWRSEAWR 144
+ KP G AG ER P G RG G V R G G + EA
Sbjct: 185 -----DGEAGKP---GKAG-ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA-G 234
Query: 145 SPQVRTLSGAEKENTDTARAGAASL 169
+P V+ SG+ EN G L
Sbjct: 235 APGVKGESGSPGENGSPGPMGPRGL 259
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 12 GRGGNGSLDYFGQNQASPPGRHSANPV---------IQPVGSPGMPGHPSPLGPCNHQ 60
GR G+ D PPGR A V + G+PG PG P P GP Q
Sbjct: 966 GREGSPGAD-------GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/133 (30%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 2 GYPAPQAK-----TEGRGG-NGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
G P PQ T G G G Y G + A G A V GSPG G P P+G
Sbjct: 198 GPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK--GEAGAPGVKGESGSPGENGSPGPMG 255
Query: 56 PCNHQWLRPRTATFPPGT-------WDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS 108
P R RT P G G P G G GP G+
Sbjct: 256 PRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 109 ERSPRPRTGTRGE 121
R P G RGE
Sbjct: 314 -RGPEGAQGPRGE 325
Score = 28.5 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P + +G G+ PPG + P G PG G P GP
Sbjct: 927 GLPGPSGEPGKQGAPGA-----SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Score = 28.1 bits (61), Expect = 4.6
Identities = 36/137 (26%), Positives = 41/137 (29%), Gaps = 24/137 (17%)
Query: 13 RGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATF-P 70
RG G + G Q PPG P G G G P P+GP P
Sbjct: 1058 RGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGP 1117
Query: 71 PGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP--------RTGTRGEG 122
PG G T P G P GP G P P G R +G
Sbjct: 1118 PG--PRGRSGETGPAG------------PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1163
Query: 123 AHLVSLGRKESGRGGWR 139
+ R + GG R
Sbjct: 1164 PDPLQYMRADQAAGGLR 1180
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.7 bits (86), Expect = 0.006
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 21/126 (16%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGH---PSPLGPCN 58
G P P G G+ + A PPG VG PG G+ P P GP
Sbjct: 848 GPPGPIGNVGAPGAKGA-----RGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG 902
Query: 59 HQWLR-PRTATFPPG-TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR- 115
+ + PR T P G +VG P G +K P GPAG+ +P P+
Sbjct: 903 KEGGKGPRGETGPAGRPGEVGPPGPPGPAG---------EKGSPGADGPAGAPGTPGPQG 953
Query: 116 -TGTRG 120
G RG
Sbjct: 954 IAGQRG 959
Score = 32.3 bits (72), Expect = 0.24
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 4 PAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
P A G+ G L PPG PVG PG PG P P GP
Sbjct: 1143 PPGSAGAPGKDGLNGLP----GPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 32.0 bits (71), Expect = 0.32
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P+ T RG G A PPGR G PG+PG P P GP
Sbjct: 109 GVEGPKGDTGPRGPRGP--------AGPPGRDGIP------GQPGLPGPPGPPGP 149
Score = 32.0 bits (71), Expect = 0.32
Identities = 33/120 (27%), Positives = 37/120 (30%), Gaps = 25/120 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P + G GS G A G P G+PG PG P P+GP
Sbjct: 1007 GPPGESGREGAPGAEGSPGRDGSPGAK--GDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 1064
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
R T G P G RGPAG + PR G GE
Sbjct: 1065 DRGETG-------PAGPAGPVGPVG---------------ARGPAGPQ-GPRGDKGETGE 1101
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/119 (27%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G+ P + G +G + G PPG N G PG PG P GP +
Sbjct: 200 GFQGPPGEPGEPGASGPMGPRG-----PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARG 254
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
L P TA P G L G + P G G + PR G RG
Sbjct: 255 L-PGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-QMGPRGLPGERG 311
Score = 30.8 bits (68), Expect = 0.70
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 26/125 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G G+ GQ PG AN G+PG PG P G
Sbjct: 371 GEPGPPGPAGAAGPAGNPGADGQ-----PGAKGANGAPGIAGAPGFPGARGPSG------ 419
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP-----RT 116
P+ PPG G+ +P G K + K +P GP G + P P +
Sbjct: 420 --PQGPGGPPGP----KGNSGEP-GAPGSKGDTGAKGEP---GPVGVQGPPGPAGEEGKR 469
Query: 117 GTRGE 121
G RGE
Sbjct: 470 GARGE 474
Score = 30.8 bits (68), Expect = 0.70
Identities = 42/146 (28%), Positives = 50/146 (34%), Gaps = 34/146 (23%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH-- 59
G P P + RGG GS + G A+ V P G G G P P GP
Sbjct: 479 GLPGPPGE---RGGPGSRGFPG-----------ADGVAGPKGPAGERGSPGPAGPKGSPG 524
Query: 60 QWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP--RTG 117
+ RP A P G P G K GPAG + P P G
Sbjct: 525 EAGRPGEAGLPGAKGLTGSPGSPGPDG------------KTGPPGPAGQDGRPGPPGPPG 572
Query: 118 TRGEGAHLVSLGRK----ESGRGGWR 139
RG+ + G K E G+ G R
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGER 598
Score = 30.4 bits (67), Expect = 0.92
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P G +G Q P G P GSPG G P P GP
Sbjct: 599 GVPGPPGAVGPAGKDGEAG--AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 651
Score = 30.4 bits (67), Expect = 0.92
Identities = 36/123 (29%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P G +G G+ PG A P G G G P P+G
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGE-----PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 860
Query: 62 LR-PRTATFPPG-TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSE--RSPRPRTG 117
+ R + PPG T G P G S P GPAG E + PR TG
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPG------PSGNAGPPGPPGPAGKEGGKGPRGETG 914
Query: 118 TRG 120
G
Sbjct: 915 PAG 917
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGP 56
PPG P G PG PG P+GP
Sbjct: 192 PPGAPGPQGFQGPPGEPGEPGASGPMGP 219
Score = 28.5 bits (62), Expect = 3.5
Identities = 38/127 (29%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P Q + G G G A PPG GSPG G P G
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD---- 1035
Query: 61 WLRPRTA-TFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG-----SERSPRP 114
R T PPG G P G GK R + P GPAG R P
Sbjct: 1036 --RGETGPAGPPGA--PGAPGAPGPVG-PAGKSGDRGETGPA--GPAGPVGPVGARGPAG 1088
Query: 115 RTGTRGE 121
G RG+
Sbjct: 1089 PQGPRGD 1095
Score = 27.7 bits (60), Expect = 5.9
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 24 QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRT-ATFPPG-TWDVGVGSL 81
+ + PG + A + P G PG G P GP + T A PPG T G
Sbjct: 286 KGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG---- 341
Query: 82 TKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
P GF G ++ + P +GP GSE P+ G RGE
Sbjct: 342 --PPGF-PGAVGAKGEAGP--QGPRGSE-GPQ---GVRGE 372
Score = 27.3 bits (59), Expect = 7.8
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 2 GYPAPQAKTEGRGGNGSLDY-FGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P P G GGN + +G ++ S G P+ P G G+PG P GP Q
Sbjct: 145 GPPGPPGPP-GLGGNFAPQLSYGYDEKSTGGISVPGPM-GPSGPRGLPGPPGAPGPQGFQ 202
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
P P + +G P G + + +P RGP G + R GT G
Sbjct: 203 G-PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ-GARGLPGTAG 260
Score = 27.3 bits (59), Expect = 7.8
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 32/134 (23%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P P RG G + + G + A PG+ G G+PG P +GP
Sbjct: 563 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK---------AGERGVPGPPGAVGPAGKD 613
Query: 61 WLRPRTATFPPG-------------TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG 107
A PPG G L P G + KP +G G
Sbjct: 614 --GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG------PPGEAGKPGEQGVPG 665
Query: 108 SERSPRPRTGTRGE 121
+P P +G RGE
Sbjct: 666 DLGAPGP-SGARGE 678
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.0 bits (84), Expect = 0.010
Identities = 58/204 (28%), Positives = 73/204 (35%), Gaps = 32/204 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG---PC 57
MG P P RG G G + PPG QP G+PG+PG P P G P
Sbjct: 393 MGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-----QP-GAPGLPGPPGPAGPHIPP 446
Query: 58 NHQWLRPRTATFPPGT-------WDVGVGSLTKPTGF-IIGKQIS---RQKQKPCMRGPA 106
+ + P PPG+ + GV T F IG IS Q P + GP
Sbjct: 447 SDEICEPGPPG-PPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPP 505
Query: 107 GSERSPRPRTGTRGEGAHLVSLGRK-------ESGRGGWRSEAWRSPQVRTLSGAEKENT 159
GS P G +GE + G K G G+ + T G + +
Sbjct: 506 GSLGFP----GQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKG 561
Query: 160 DTARAGAASLLDLWSLWVPDGLRG 183
+ GA L L DGL G
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLPG 585
Score = 32.7 bits (73), Expect = 0.18
Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPG-RHSANPVIQP-----VGSPGMPGHPSPLG 55
G+P P+ RG G G PPG + P P G PGMPGH G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPG-----PPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 56 P-----CN---HQWLRPRTATF-----PPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCM 102
P CN + P + F PPG G+ + G II + K P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQGPPG--PPGIPGMKGEPGSIIMSSLPGPKGNPGY 175
Query: 103 RGPAGSERSPRPRTGTRG 120
GP G + P P TG G
Sbjct: 176 PGPPGIQGLPGP-TGIPG 192
Score = 31.2 bits (69), Expect = 0.54
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
PG + P G+PG+PG P P+G H
Sbjct: 1127 PGPPGPKGISGPPGNPGLPGEPGPVGGGGH 1156
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
Query: 2 GYPAPQAKT--EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
G P P+ + G GN + + PG G PG+PG P GP
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGI----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG- 1131
Query: 60 QWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTR 119
P+ + PPG + G+ P G G Q P +G G + P P G +
Sbjct: 1132 ----PKGISGPPG--NPGLPGEPGPVG---GGGHPGQPGPPGEKGKPGQDGIPGP-AGQK 1181
Query: 120 GE 121
GE
Sbjct: 1182 GE 1183
Score = 29.6 bits (65), Expect = 1.6
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG-PCNHQ 60
G P P +T G G G N P P I G PG PG P P+G P H
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG 840
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
+ PPG G G P + G AG+ P GT+G
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP----GTKG 896
Query: 121 E 121
E
Sbjct: 897 E 897
Score = 28.9 bits (63), Expect = 2.7
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 1 MGYPAPQAKT--EGRGGNGSL--DYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
MG P P GR G L D Q Q PG GS G PG P P GP
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK------GSKGEPGLPGPPGP 954
Query: 57 CNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR 115
+ L + PG G+ ++ P G+ + + +P + G G P P+
Sbjct: 955 MDPNLLGSKGEKGEPGL--PGIPGVSGPKGY---QGLPGDPGQPGLSGQPGLPGPPGPK 1008
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 17/55 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P +G G + + G+ PPG NP G PG+PG+ P+GP
Sbjct: 585 GLPGP------KGEPGGITFKGER--GPPG----NP-----GLPGLPGNIGPMGP 622
Score = 28.5 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 17 GSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFP--PG-T 73
G++ G PPG + G+PG PG P P G +P P PG
Sbjct: 615 GNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRD 674
Query: 74 WDVGV 78
DVG+
Sbjct: 675 GDVGL 679
Score = 28.5 bits (62), Expect = 3.5
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 2 GYPAPQAKT--EGRGGNGSLDYFGQNQASP-----PGRHSANPVIQPVGSPGMP------ 48
G P P G+ G+G L N P PG H V P G PG P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 49 --GHPSPLGP 56
G+P P GP
Sbjct: 1250 PKGNPGPQGP 1259
Score = 28.5 bits (62), Expect = 3.5
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQ-PVGSPGMPGHPSPLGPCNHQ 60
G P P+ + G G Q PPG S P ++ P G+PG G P GP Q
Sbjct: 1217 GLPGPKGEPGFHGFPGV-----QGPPGPPG--SPGPALEGPKGNPGPQGPPGRPGPTGFQ 1269
Query: 61 WL 62
L
Sbjct: 1270 GL 1271
Score = 27.3 bits (59), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G+PG+PG P +GP
Sbjct: 1007 PKGNPGLPGQPGLIGP 1022
Score = 27.3 bits (59), Expect = 7.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPG 49
MG+P PQ G +G G +P I +G PG+PG
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.0 bits (84), Expect = 0.010
Identities = 58/204 (28%), Positives = 73/204 (35%), Gaps = 32/204 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG---PC 57
MG P P RG G G + PPG QP G+PG+PG P P G P
Sbjct: 393 MGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-----QP-GAPGLPGPPGPAGPHIPP 446
Query: 58 NHQWLRPRTATFPPGT-------WDVGVGSLTKPTGF-IIGKQIS---RQKQKPCMRGPA 106
+ + P PPG+ + GV T F IG IS Q P + GP
Sbjct: 447 SDEICEPGPPG-PPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPP 505
Query: 107 GSERSPRPRTGTRGEGAHLVSLGRK-------ESGRGGWRSEAWRSPQVRTLSGAEKENT 159
GS P G +GE + G K G G+ + T G + +
Sbjct: 506 GSLGFP----GQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKG 561
Query: 160 DTARAGAASLLDLWSLWVPDGLRG 183
+ GA L L DGL G
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLPG 585
Score = 32.7 bits (73), Expect = 0.18
Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPG-RHSANPVIQP-----VGSPGMPGHPSPLG 55
G+P P+ RG G G PPG + P P G PGMPGH G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPG-----PPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 56 P-----CN---HQWLRPRTATF-----PPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCM 102
P CN + P + F PPG G+ + G II + K P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQGPPG--PPGIPGMKGEPGSIIMSSLPGPKGNPGY 175
Query: 103 RGPAGSERSPRPRTGTRG 120
GP G + P P TG G
Sbjct: 176 PGPPGIQGLPGP-TGIPG 192
Score = 31.2 bits (69), Expect = 0.54
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
PG + P G+PG+PG P P+G H
Sbjct: 1127 PGPPGPKGISGPPGNPGLPGEPGPVGGGGH 1156
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
Query: 2 GYPAPQAKT--EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
G P P+ + G GN + + PG G PG+PG P GP
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGI----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG- 1131
Query: 60 QWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTR 119
P+ + PPG + G+ P G G Q P +G G + P P G +
Sbjct: 1132 ----PKGISGPPG--NPGLPGEPGPVG---GGGHPGQPGPPGEKGKPGQDGIPGP-AGQK 1181
Query: 120 GE 121
GE
Sbjct: 1182 GE 1183
Score = 30.0 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQ-------PVGSPGMPGHPSPL 54
G P P+ + G G Q PPG S P ++ P G PG PG P P
Sbjct: 1217 GLPGPKGEPGFHGFPGV-----QGPPGPPG--SPGPALEGPKGNPGPQGPPGRPGLPGPE 1269
Query: 55 GP 56
GP
Sbjct: 1270 GP 1271
Score = 29.6 bits (65), Expect = 1.6
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG-PCNHQ 60
G P P +T G G G N P P I G PG PG P P+G P H
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG 840
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
+ PPG G G P + G AG+ P GT+G
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP----GTKG 896
Query: 121 E 121
E
Sbjct: 897 E 897
Score = 28.9 bits (63), Expect = 2.7
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 1 MGYPAPQAKT--EGRGGNGSL--DYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
MG P P GR G L D Q Q PG GS G PG P P GP
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK------GSKGEPGLPGPPGP 954
Query: 57 CNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR 115
+ L + PG G+ ++ P G+ + + +P + G G P P+
Sbjct: 955 MDPNLLGSKGEKGEPGL--PGIPGVSGPKGY---QGLPGDPGQPGLSGQPGLPGPPGPK 1008
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 17/55 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P +G G + + G+ PPG NP G PG+PG+ P+GP
Sbjct: 585 GLPGP------KGEPGGITFKGER--GPPG----NP-----GLPGLPGNIGPMGP 622
Score = 28.5 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 17 GSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFP--PG-T 73
G++ G PPG + G+PG PG P P G +P P PG
Sbjct: 615 GNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRD 674
Query: 74 WDVGV 78
DVG+
Sbjct: 675 GDVGL 679
Score = 28.1 bits (61), Expect = 4.6
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 21/121 (17%)
Query: 4 PAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLR 63
PA Q G+ G G+ PPG + G PG+PG+P GP
Sbjct: 1177 PAGQKGEPGQPGFGN--------PGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG----E 1224
Query: 64 PRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR--TGTRGE 121
P FP GV P G G + K P +GP G P P G G
Sbjct: 1225 PGFHGFP------GVQGPPGPPG-SPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGN 1277
Query: 122 G 122
G
Sbjct: 1278 G 1278
Score = 27.3 bits (59), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G+PG+PG P +GP
Sbjct: 1007 PKGNPGLPGQPGLIGP 1022
Score = 27.3 bits (59), Expect = 7.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPG 49
MG+P PQ G +G G +P I +G PG+PG
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.0 bits (84), Expect = 0.010
Identities = 58/204 (28%), Positives = 73/204 (35%), Gaps = 32/204 (15%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG---PC 57
MG P P RG G G + PPG QP G+PG+PG P P G P
Sbjct: 393 MGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-----QP-GAPGLPGPPGPAGPHIPP 446
Query: 58 NHQWLRPRTATFPPGT-------WDVGVGSLTKPTGF-IIGKQIS---RQKQKPCMRGPA 106
+ + P PPG+ + GV T F IG IS Q P + GP
Sbjct: 447 SDEICEPGPPG-PPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPP 505
Query: 107 GSERSPRPRTGTRGEGAHLVSLGRK-------ESGRGGWRSEAWRSPQVRTLSGAEKENT 159
GS P G +GE + G K G G+ + T G + +
Sbjct: 506 GSLGFP----GQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKG 561
Query: 160 DTARAGAASLLDLWSLWVPDGLRG 183
+ GA L L DGL G
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLPG 585
Score = 32.7 bits (73), Expect = 0.18
Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPG-RHSANPVIQP-----VGSPGMPGHPSPLG 55
G+P P+ RG G G PPG + P P G PGMPGH G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPG-----PPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 56 P-----CN---HQWLRPRTATF-----PPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCM 102
P CN + P + F PPG G+ + G II + K P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQGPPG--PPGIPGMKGEPGSIIMSSLPGPKGNPGY 175
Query: 103 RGPAGSERSPRPRTGTRG 120
GP G + P P TG G
Sbjct: 176 PGPPGIQGLPGP-TGIPG 192
Score = 31.2 bits (69), Expect = 0.54
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
PG + P G+PG+PG P P+G H
Sbjct: 1127 PGPPGPKGISGPPGNPGLPGEPGPVGGGGH 1156
Score = 30.0 bits (66), Expect = 1.2
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
Query: 2 GYPAPQAKT--EGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
G P P+ + G GN + + PG G PG+PG P GP
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGI----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG- 1131
Query: 60 QWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTR 119
P+ + PPG + G+ P G G Q P +G G + P P G +
Sbjct: 1132 ----PKGISGPPG--NPGLPGEPGPVG---GGGHPGQPGPPGEKGKPGQDGIPGP-AGQK 1181
Query: 120 GE 121
GE
Sbjct: 1182 GE 1183
Score = 29.6 bits (65), Expect = 1.6
Identities = 35/121 (28%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG-PCNHQ 60
G P P +T G G G N P P I G PG PG P P+G P H
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG 840
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
+ PPG G G P + G AG+ P GT+G
Sbjct: 841 IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP----GTKG 896
Query: 121 E 121
E
Sbjct: 897 E 897
Score = 28.9 bits (63), Expect = 2.7
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 1 MGYPAPQAKT--EGRGGNGSL--DYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
MG P P GR G L D Q Q PG GS G PG P P GP
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK------GSKGEPGLPGPPGP 954
Query: 57 CNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR 115
+ L + PG G+ ++ P G+ + + +P + G G P P+
Sbjct: 955 MDPNLLGSKGEKGEPGL--PGIPGVSGPKGY---QGLPGDPGQPGLSGQPGLPGPPGPK 1008
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 17/55 (30%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P +G G + + G+ PPG NP G PG+PG+ P+GP
Sbjct: 585 GLPGP------KGEPGGITFKGER--GPPG----NP-----GLPGLPGNIGPMGP 622
Score = 28.5 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 17 GSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFP--PG-T 73
G++ G PPG + G+PG PG P P G +P P PG
Sbjct: 615 GNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRD 674
Query: 74 WDVGV 78
DVG+
Sbjct: 675 GDVGL 679
Score = 28.5 bits (62), Expect = 3.5
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 2 GYPAPQAKT--EGRGGNGSLDYFGQNQASP-----PGRHSANPVIQPVGSPGMP------ 48
G P P G+ G+G L N P PG H V P G PG P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEG 1249
Query: 49 --GHPSPLGP 56
G+P P GP
Sbjct: 1250 PKGNPGPQGP 1259
Score = 27.3 bits (59), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G+PG+PG P +GP
Sbjct: 1007 PKGNPGLPGQPGLIGP 1022
Score = 27.3 bits (59), Expect = 7.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPG 49
MG+P PQ G +G G +P I +G PG+PG
Sbjct: 1032 MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPG 1080
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.010
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQAS---------PPGRHS--ANPVIQ-PVGSPGMP 48
G P PQ + +G G + G Q+QAS PPG +P + P+G PG+P
Sbjct: 178 GQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 237
Query: 49 GHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS 108
G P P G Q R G+ P + G + + P +G G+
Sbjct: 238 GPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAG--MKGEPGIPGTKGEKGA 295
Query: 109 ERSP-----RPRTGTRGEGAHLVSLGRKESGRGG 137
E SP + G +G+ + + GR E G G
Sbjct: 296 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG 329
Score = 31.6 bits (70), Expect = 0.41
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 4 PAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
PAPQ G G+ L G + PG P+G G PGHP P G
Sbjct: 121 PAPQ----GSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 169
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----QASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
G P P+ + G G + G+ PG + P G+PG G P P GP
Sbjct: 521 GVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 580
Query: 58 NHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSE--RSPRPR 115
R + PG +T PTG P + GP G + R R +
Sbjct: 581 GE-----RGSKGDPG--------MTGPTG---------AAGLPGLHGPPGDKGNRGERGK 618
Query: 116 TGTRG 120
G+RG
Sbjct: 619 KGSRG 623
Score = 27.7 bits (60), Expect = 5.9
Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 26 QASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPT 85
Q PPG +G PG PGH GP PG D+G P
Sbjct: 409 QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRG-----------KPG--DMGPPGPQGPP 455
Query: 86 GFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK-ESGRGG 137
G + P ++G G SP + G +GE S G K E+G G
Sbjct: 456 G---------KDGPPGVKGENGHPGSPGEK-GEKGETGQAGSPGEKGEAGEKG 498
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 37.0 bits (84), Expect = 0.010
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQAS---------PPGRHS--ANPVIQ-PVGSPGMP 48
G P PQ + +G G + G Q+QAS PPG +P + P+G PG+P
Sbjct: 187 GQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 246
Query: 49 GHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS 108
G P P G Q R G+ P + G + + P +G G+
Sbjct: 247 GPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAG--MKGEPGIPGTKGEKGA 304
Query: 109 ERSP-----RPRTGTRGEGAHLVSLGRKESGRGG 137
E SP + G +G+ + + GR E G G
Sbjct: 305 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG 338
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----QASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
G P P+ + G G + G+ PG + P G+PG G P P GP
Sbjct: 530 GVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 589
Query: 58 NHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSE--RSPRPR 115
R + PG +T PTG P + GP G + R R +
Sbjct: 590 GE-----RGSKGDPG--------MTGPTG---------AAGLPGLHGPPGDKGNRGERGK 627
Query: 116 TGTRG 120
G+RG
Sbjct: 628 KGSRG 632
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 4 PAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
P + G G+ L G + PG P+G G PGHP P G
Sbjct: 126 PTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 178
Score = 27.7 bits (60), Expect = 5.9
Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 26 QASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPT 85
Q PPG +G PG PGH GP PG D+G P
Sbjct: 418 QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRG-----------KPG--DMGPPGPQGPP 464
Query: 86 GFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK-ESGRGG 137
G + P ++G G SP + G +GE S G K E+G G
Sbjct: 465 G---------KDGPPGVKGENGHPGSPGEK-GEKGETGQAGSPGEKGEAGEKG 507
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 37.0 bits (84), Expect = 0.010
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQAS---------PPGRHS--ANPVIQ-PVGSPGMP 48
G P PQ + +G G + G Q+QAS PPG +P + P+G PG+P
Sbjct: 199 GQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 258
Query: 49 GHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGS 108
G P P G Q R G+ P + G + + P +G G+
Sbjct: 259 GPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAG--MKGEPGIPGTKGEKGA 316
Query: 109 ERSP-----RPRTGTRGEGAHLVSLGRKESGRGG 137
E SP + G +G+ + + GR E G G
Sbjct: 317 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG 350
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN----QASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
G P P+ + G G + G+ PG + P G+PG G P P GP
Sbjct: 542 GVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 601
Query: 58 NHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSE--RSPRPR 115
R + PG +T PTG P + GP G + R R +
Sbjct: 602 GE-----RGSKGDPG--------MTGPTG---------AAGLPGLHGPPGDKGNRGERGK 639
Query: 116 TGTRG 120
G+RG
Sbjct: 640 KGSRG 644
Score = 28.5 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 12 GRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
G G+ L G + PG P+G G PGHP P G
Sbjct: 146 GSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 190
Score = 27.7 bits (60), Expect = 5.9
Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 26 QASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPT 85
Q PPG +G PG PGH GP PG D+G P
Sbjct: 430 QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRG-----------KPG--DMGPPGPQGPP 476
Query: 86 GFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRK-ESGRGG 137
G + P ++G G SP + G +GE S G K E+G G
Sbjct: 477 G---------KDGPPGVKGENGHPGSPGEK-GEKGETGQAGSPGEKGEAGEKG 519
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 36.6 bits (83), Expect = 0.013
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
+G P PQ +G NG Q + G + G+PG+PG P P+GP +
Sbjct: 1618 IGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR 1677
Query: 61 W-------LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPR 113
+ PR PPG+ G +T P+G KP G G P
Sbjct: 1678 GFTGKDGAMGPRGPPGPPGS--PGSPGVTGPSG------------KP---GKPGDHGRPG 1720
Query: 114 PRTGTRGE 121
P +G +GE
Sbjct: 1721 P-SGLKGE 1727
Score = 32.3 bits (72), Expect = 0.24
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFI 88
PPG A P G PG PG P GP P P + G GS + P G
Sbjct: 1785 PPGSAGARGEPGPGGRPGFPGTPGMQGP-------PGERGLPGEKGERGTGS-SGPRGL- 1835
Query: 89 IGKQISRQKQKPCMRGPAGSERS-PRPRTGTRG 120
P GP G R+ P TG+RG
Sbjct: 1836 -----------PGPPGPQGESRTGPPGSTGSRG 1857
Score = 29.3 bits (64), Expect = 2.0
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 23 GQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG-TWDVGVGSL 81
G+ A P + P G PG G P GP + + A PPG D+G
Sbjct: 1566 GKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGP 1623
Query: 82 TKPTG--FIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
P G G I ++ + M+G AG P RTGT G
Sbjct: 1624 QGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLP-GRTGTPG 1663
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 36.6 bits (83), Expect = 0.013
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
+G P PQ +G NG Q + G + G+PG+PG P P+GP +
Sbjct: 2782 IGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDR 2841
Query: 61 W-------LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPR 113
+ PR PPG+ G +T P+G KP G G P
Sbjct: 2842 GFTGKDGAMGPRGPPGPPGS--PGSPGVTGPSG------------KP---GKPGDHGRPG 2884
Query: 114 PRTGTRGE 121
P +G +GE
Sbjct: 2885 P-SGLKGE 2891
Score = 32.3 bits (72), Expect = 0.24
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFI 88
PPG A P G PG PG P GP P P + G GS + P G
Sbjct: 2949 PPGSAGARGEPGPGGRPGFPGTPGMQGP-------PGERGLPGEKGERGTGS-SGPRGL- 2999
Query: 89 IGKQISRQKQKPCMRGPAGSERS-PRPRTGTRG 120
P GP G R+ P TG+RG
Sbjct: 3000 -----------PGPPGPQGESRTGPPGSTGSRG 3021
Score = 29.3 bits (64), Expect = 2.0
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 23 GQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG-TWDVGVGSL 81
G+ A P + P G PG G P GP + + A PPG D+G
Sbjct: 2730 GKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGI--SGAIGPPGPRGDIGPPGP 2787
Query: 82 TKPTG--FIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
P G G I ++ + M+G AG P RTGT G
Sbjct: 2788 QGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLP-GRTGTPG 2827
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 36.6 bits (83), Expect = 0.013
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 6 PQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
P A +G G ++ GQ PPG V+ P G PG PG P GP
Sbjct: 370 PGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGP 420
Score = 32.7 bits (73), Expect = 0.18
Identities = 32/120 (26%), Positives = 41/120 (34%), Gaps = 22/120 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P+ + G G G+ PPG + G PG PG P P G
Sbjct: 752 GAPGPRGEDGPEGPKGQAGQAGEE--GPPGSAGEKGKLGVPGLPGYPGRPGPKG------ 803
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
+ FP +G + TG Q RGP GS R R + G G+
Sbjct: 804 ----SIGFPGPLGPIGEKGKSGKTG---------QPGLEGERGPPGS-RGERGQPGATGQ 849
Score = 32.0 bits (71), Expect = 0.32
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 30/113 (26%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G+P P+ G G G G PPG PVG+ G PG PLGP
Sbjct: 977 GFPGPKG---GPGDPGPTGLKGDK--GPPG---------PVGANGSPGERGPLGPAGGIG 1022
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
L ++ + P VG GK+ SR ++ P GP G + P P
Sbjct: 1023 LPGQSGSEGP------VGP--------AGKKGSRGERGP--PGPTGKDGIPGP 1059
Score = 31.2 bits (69), Expect = 0.54
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG 72
+G G + GQ PPG P G G G P P G L PR + P G
Sbjct: 562 KGQRGDFGHVGQ--PGPPGEDGERGAEGPPGPTGQAGEPGPRG-----LLGPRGSPGPTG 614
Query: 73 TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPR--TGTRGE 121
GV + G + P +G GS+ P P+ GT GE
Sbjct: 615 R--PGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGE 663
Score = 31.2 bits (69), Expect = 0.54
Identities = 45/163 (27%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFG-QNQASPPG----RHSANPVIQPV--------GSPGM 47
+G+P P +G +G G + + PPG R QP G+PG+
Sbjct: 805 IGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGI 864
Query: 48 PGH------------PSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTG--FIIGKQI 93
PG P P GP HQ R P ++G T P G ++G Q
Sbjct: 865 PGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPG-HPGQRGELGFQGQTGPPGPAGVLGPQ- 922
Query: 94 SRQKQKPCMRGPAGSERSPRPRTGTRGEGAHLVSLGRKESGRG 136
K GP G ER P G GE L L +E +G
Sbjct: 923 ----GKTGEVGPLG-ERGPPGPPGPPGEQG-LPGLEGREGAKG 959
Score = 31.2 bits (69), Expect = 0.54
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P + GG G G + P G+ + P G G G P PLGP
Sbjct: 1007 GSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGP---- 1062
Query: 61 WLRPRTATFPPG----TWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
L P A P G DVG G K + +P +RGPAG P
Sbjct: 1063 -LGPPGAAGPSGEEGDKGDVGAPGHKGSKG---DKGDAGPPGQPGIRGPAGHPGPP 1114
Score = 30.0 bits (66), Expect = 1.2
Identities = 37/138 (26%), Positives = 47/138 (34%), Gaps = 28/138 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P P+ +G +G G + PPG A + P G PG G
Sbjct: 1220 GIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLG----------- 1268
Query: 61 WLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
PPG D GV + G K P G +G +P P G RG
Sbjct: 1269 ---------PPG--DPGVSGIDGSPG---EKGDPGDVGGPGPPGASGEPGAPGP-PGKRG 1313
Query: 121 EGAHLVSLGRK-ESGRGG 137
H+ GR+ E G G
Sbjct: 1314 PSGHMGREGREGEKGAKG 1331
Score = 30.0 bits (66), Expect = 1.2
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 29 PPGR---HSANPVIQPVGSPGM------PGHPSPLGPCNHQWLRPRTATFPPG-TWDVGV 78
PPGR + PVG PG+ G P PLGP L+ T P G +G+
Sbjct: 1350 PPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTG--PKGEKGHIGL 1407
Query: 79 GSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
L P G K + P ++GP G + P P
Sbjct: 1408 IGLIGPPGEAGEK---GDQGLPGVQGPPGPKGDPGP 1440
Score = 29.6 bits (65), Expect = 1.6
Identities = 35/134 (26%), Positives = 43/134 (32%), Gaps = 27/134 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG----QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
G P + T +G G + G +A G V P G G PG P P+G
Sbjct: 1388 GLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSL 1447
Query: 58 NHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTG 117
H PPG + P G K P GP G + P G
Sbjct: 1448 GHPG--------PPG--------VAGPLG------QKGSKGSPGSMGPRG-DTGPAGPPG 1484
Query: 118 TRGEGAHLVSLGRK 131
G A L L R+
Sbjct: 1485 PPGAPAELHGLRRR 1498
Score = 28.9 bits (63), Expect = 2.7
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQ 60
G P P + +G +GS G Q PG P G+PG+PG P GP H
Sbjct: 635 GEPGPPGQ---QGNHGSQGLPGPQGLIGTPGEKG------PPGNPGIPGLPGSDGPLGHP 685
Query: 61 WLRPRT----ATFPPGT 73
T A PPG+
Sbjct: 686 GHEGPTGEKGAQGPPGS 702
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLG 55
G+P P +G G FGQ G VI P G G+PG P G
Sbjct: 1109 GHPGPPGADGAQGRRGPPGLFGQK--GDDGVRGFVGVIGPPGLQGLPGPPGEKG 1160
Score = 27.3 bits (59), Expect = 7.8
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 30/128 (23%)
Query: 14 GGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSP---LGPCNHQWLRPRTAT-- 68
G +G L + G P G A P GS G PG+P P G ++ L+
Sbjct: 677 GSDGPLGHPGHE--GPTGEKGAQG---PPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKG 731
Query: 69 ---FPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSE--RSPRPRTGTRGEGA 123
FP DVG + + KP GP G + P+ + G GE
Sbjct: 732 EDGFPGFKGDVG---------------LKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEG 776
Query: 124 HLVSLGRK 131
S G K
Sbjct: 777 PPGSAGEK 784
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
G P + T +G G+ Q PPG + +P GSPG PG P P GP H
Sbjct: 1687 GTPGERGLTGIKGEKGNPGVGTQGPRGPPGPAGPSGESRP-GSPGPPGSPGPRGPPGH 1743
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN-------QASPPGRHSANPVIQPVGSPGMPGHPSPL 54
G P PQ G G G GQ + PPG P+G PG PG P
Sbjct: 1530 GLPGPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPGPPG------PIGIPGTPGVPGIT 1583
Query: 55 GPCNHQWLRPRTATFPPG 72
G + P+ A PPG
Sbjct: 1584 GS-----MGPQGALGPPG 1596
Score = 29.3 bits (64), Expect = 2.0
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFP-----PGTWDVGVGSLTK 83
P S V P G PG PG P G + P T FP PGT G LT
Sbjct: 1643 PSHSSSIRTVQGPPGEPGRPGSPGAPG----EQGPPGTPGFPGNAGVPGT--PGERGLTG 1696
Query: 84 PTGFIIGKQISRQ--KQKPCMRGPAGSER--SPRP--RTGTRGEGAHLVSLG-RKESGRG 136
G + Q + P GP+G R SP P G RG HL G + SG+
Sbjct: 1697 IKGEKGNPGVGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQP 1756
Query: 137 GW 138
G+
Sbjct: 1757 GY 1758
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 36.2 bits (82), Expect = 0.017
Identities = 45/178 (25%), Positives = 65/178 (36%), Gaps = 39/178 (21%)
Query: 4 PAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVI---QPVGSPGMPGHPS-------- 52
P P K +G G ++ SPPG+ P QP G P PG P
Sbjct: 132 PPPPGKPQGPPPQGDKS---RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGK 188
Query: 53 ----------PLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCM 102
P GP Q + R++ PPG KP G Q Q Q P
Sbjct: 189 KPQGPPPPGKPQGP-PPQGDKSRSSQSPPG----------KPQG--PPPQGGNQPQGP-- 233
Query: 103 RGPAGSERSPRPRTGTRGEGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSGAEKENTD 160
P G + P P+ G + +G + +GG +S++ RSP + ++E +
Sbjct: 234 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 291
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 35.8 bits (81), Expect = 0.022
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 29 PPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFI 88
P G+ + P G+PG+PG P P GP P P D G+ L P G
Sbjct: 508 PSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQPV-PGEKGDQGLSGLMGPPGMQ 566
Query: 89 IGKQISRQKQKPCMRGPAG 107
K + P + G G
Sbjct: 567 GDKGLKGHPGLPGLPGEQG 585
Score = 30.8 bits (68), Expect = 0.70
Identities = 54/175 (30%), Positives = 64/175 (36%), Gaps = 50/175 (28%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSAN-----PVIQ-PVGSPGMPGHP--- 51
+G P Q RGG G G PPG ++ P IQ P G G+PG P
Sbjct: 1308 IGPPGKQGLPGIRGGPGRTGLAGA--PGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQ 1365
Query: 52 ---------SPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGF-----------IIGK 91
GPC L+ + PG + GV LT GF I+G
Sbjct: 1366 GKRGHRGAQGDQGPCGDPGLKGQ-----PG--EYGVQGLTGFQGFPGPKGPEGDAGIVG- 1417
Query: 92 QISRQKQKPCMR---GPAGSER--SPRPRTGTRGEGAHLVSLGRKESGRGGWRSE 141
IS K R GP G E P RTG RGE R E+G G R +
Sbjct: 1418 -ISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRGEKGF-----RGETGPQGPRGQ 1466
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P+ G G++ G+ P G + +G G G P PLGP +
Sbjct: 831 GEPGPEGLKGEVGDQGNIGKIGET--GPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKG 888
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRG 120
+ PPG +G L P G + RGP GS+ P+ + G+RG
Sbjct: 889 VMGYPG--PPGV-PGPIGPLGLP-GHV------------GARGPPGSQ-GPKGQRGSRG 930
Score = 30.0 bits (66), Expect = 1.2
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPV----------GSPGMPGHP 51
G P Q + +G GS G+ A P P +Q + G+ G+ G+P
Sbjct: 1246 GEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNP 1305
Query: 52 SPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERS 111
+GP Q L P P T G+ P G K S P ++GP G +
Sbjct: 1306 GKIGPPGKQGL-PGIRGGPGRT---GLAGAPGPPGV---KGSSGLPGSPGIQGPKGEQGL 1358
Query: 112 PRPRTGTRGEGAH 124
P + G +G+ H
Sbjct: 1359 P-GQPGIQGKRGH 1370
Score = 27.3 bits (59), Expect = 7.8
Identities = 31/117 (26%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G+P G +GS G PPG + PVG G G P P+G ++
Sbjct: 651 GFPGDFGDRGPAGLDGSPGLVGGT--GPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKG 708
Query: 62 L------RPRTATF-----PPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG 107
L + T P D G L P G S Q P ++GP+G
Sbjct: 709 LPGIKGDKGEQGTAGELGEPGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSG 765
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.4 bits (80), Expect = 0.029
Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 33/156 (21%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFG----QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
G P PQ T +G G G + +A P G + + P+G PG G P G
Sbjct: 450 GSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGD- 508
Query: 58 NHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTG 117
P T PPG P G ++ P RG GS+ P P+ G
Sbjct: 509 ------PGTVG-PPG-----------PVG---------ERGAPGNRGFPGSDGLPGPK-G 540
Query: 118 TRGEGAHLVSLGRKESGRGGWRSEAWRSPQVRTLSG 153
+GE + S G K S R P R L+G
Sbjct: 541 AQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTG 576
Score = 35.0 bits (79), Expect = 0.037
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
G P P + G G L G PPG + P G PG PG P P GP H
Sbjct: 1176 GPPGPVGPSGKEGNPGPLGPIG-----PPGVRGSVGEAGPEGPPGEPGPPGPPGPPGH 1228
Score = 32.3 bits (72), Expect = 0.24
Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPSPLG-PCNH 59
G P + +G G+ + G + PPG A P+G PG G P G P +H
Sbjct: 891 GVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSH 950
Query: 60 QWLRPRTATFPPG----TWDVGVGSLTKPTG-----------FIIGKQISR-QKQKPCMR 103
+ R PPG D G P G I+G R ++ P +
Sbjct: 951 GRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLP 1010
Query: 104 GPAGS--ERSPRPRTGTRG 120
GPAG+ + P TG +G
Sbjct: 1011 GPAGTPGKVGPTGATGDKG 1029
Score = 32.0 bits (71), Expect = 0.32
Identities = 31/99 (31%), Positives = 35/99 (35%), Gaps = 22/99 (22%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P +G G FG PPG PVG G G+P PLGP
Sbjct: 1152 GLPGPPGPNGEQGSAGIPGPFGPR--GPPG---------PVGPSGKEGNPGPLGPIGPPG 1200
Query: 62 LR----------PRTATFPPGTWDVGVGSLTKPTGFIIG 90
+R P PPG G LT G I+G
Sbjct: 1201 VRGSVGEAGPEGPPGEPGPPGP-PGPPGHLTAALGDIMG 1238
Score = 30.8 bits (68), Expect = 0.70
Identities = 49/167 (29%), Positives = 59/167 (35%), Gaps = 17/167 (10%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVI--QPVGSPGMPGHPSPLGPCNH 59
G P P +G G G+ P P + QP G+PG PGHPS GP
Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQP-GAPGPPGHPSHPGPDGL 187
Query: 60 QWLRPRTATFPPGTWDVGVGS-------LTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
RP +A G+GS P G + + Q+ GP G P
Sbjct: 188 S--RPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDP 245
Query: 113 RPR--TGTRG-EGAHLVSLGRKESGRGGWRSEAW--RSPQVRTLSGA 154
P G+RG EG E GR G E SP R GA
Sbjct: 246 GPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGA 292
Score = 30.4 bits (67), Expect = 0.92
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 5 APQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPG------MPGHPSPLGPCN 58
AP +K E G G + G P G + P G+PG MPG P P+GP
Sbjct: 316 APGSKGEA-GPTGPMGAMGP--LGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLG 372
Query: 59 HQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSP 112
P ++ FP + G+ PTG + Q+ + GP GS P
Sbjct: 373 ----IPGSSGFP---GNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLP 419
Score = 30.0 bits (66), Expect = 1.2
Identities = 39/143 (27%), Positives = 47/143 (32%), Gaps = 37/143 (25%)
Query: 1 MGYPAPQAKTEGRGGNGSLDYFG-QNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNH 59
MG P P+ + G G G Q PG+ PVG PG+ G G
Sbjct: 614 MGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQG---- 669
Query: 60 QWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTR 119
PPG PTGF + P GP G P + G
Sbjct: 670 ----------PPG-----------PTGF---------QGLPGPPGPPGEGGKPGDQ-GVP 698
Query: 120 GEGAHLVSLG-RKESGRGGWRSE 141
G+ + LG R E G G R E
Sbjct: 699 GDPGAVGPLGPRGERGNPGERGE 721
Score = 29.3 bits (64), Expect = 2.0
Identities = 34/121 (28%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN-QASPPGRHSANPVIQPVGSPGMP------GHPSPL 54
G P + + G G GQ + PPG PVGSPG+P G P
Sbjct: 381 GNPGMKGEAGPTGARGPEGPQGQRGETGPPG---------PVGSPGLPGAIGTDGTPGAK 431
Query: 55 GPCNHQWLR-PRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPR 113
GP P + PPG+ G T P G + P +G AG + P
Sbjct: 432 GPTGSPGTSGPPGSAGPPGS--PGPQGSTGPQGI---RGQPGDPGVPGFKGEAGPKGEPG 486
Query: 114 P 114
P
Sbjct: 487 P 487
Score = 28.5 bits (62), Expect = 3.5
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G P P+ G G G+ G + A G PG G P P GP +
Sbjct: 771 GTPGPKGDRGGIGEKGAEGTAGNDGAR--------------GLPGPLGPPGPAGPTGEKG 816
Query: 62 -LRPRTATFPPGT-WDVGVGSLTKPTGFI--IGKQ-------ISRQKQKPCMRGPAGSER 110
PR PPG+ + G PTG + G Q + + +P +G AG
Sbjct: 817 EPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAG--- 873
Query: 111 SPRPRTGTRGEGAH 124
SP P+ G H
Sbjct: 874 SPGPQGLAGSPGPH 887
Score = 28.1 bits (61), Expect = 4.6
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 41 PVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKP 100
P GS G PG P P G Q +R + PG D GV G G+ Q P
Sbjct: 442 PPGSAGPPGSPGPQGSTGPQGIRGQ-----PG--DPGVPGFKGEAG-PKGEPGPHGIQGP 493
Query: 101 CMRGPAGSE--RSPRPRTGTRG 120
GP G E R PR GT G
Sbjct: 494 I--GPPGEEGKRGPRGDPGTVG 513
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQN-QASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G P P T RG G G+ PG + P G+ G G P P+GP
Sbjct: 981 GPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGP 1036
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 35.4 bits (80), Expect = 0.029
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 26 QASPPGRHSAN-PVIQPVGSPGMPGHPSPLGP 56
+A P G S + PV P G PG PGHP P GP
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Score = 31.2 bits (69), Expect = 0.54
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 41 PVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGK-QISRQKQK 99
P G PG PG P P GP P+ GT GV P G + ++S
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGT--QGVPGAPGPPGEAGPRGELSVSTPV 654
Query: 100 PCMRGPAGSERSPRPR 115
P GP G P P+
Sbjct: 655 PGPPGPPGPPGHPGPQ 670
Score = 31.2 bits (69), Expect = 0.54
Identities = 42/137 (30%), Positives = 48/137 (35%), Gaps = 28/137 (20%)
Query: 2 GYPAPQA--------KTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPS 52
G+P P +T RG GS G PPG H VI G G GHP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSH----VIGIKGDKGSMGHPG 1277
Query: 53 PLGPCNHQWLRPRTA--TFPPGTWDV-GVGSLTKP---TGFIIGKQISRQKQKPCMRGPA 106
P GP P TA PPG G L P GF + +K P G
Sbjct: 1278 PKGP-------PGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSI 1330
Query: 107 G--SERSPRPRTGTRGE 121
G P+ G RG+
Sbjct: 1331 GPPGPIGPKGPPGVRGD 1347
Score = 30.0 bits (66), Expect = 1.2
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQ-------PVGSPGMPGHPSPLGPCNHQWLRPR 65
+G G Y + PPG + +P + +G PG PGH P G P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPGP-TGDPGLPGDMGKKGEMGQPGPPGHLGPAG--------PE 1100
Query: 66 TATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGP---AGSERSPRPRTGTRGE 121
A PG+ G+ P G + K I P +RGP G SP P G RG+
Sbjct: 1101 GAPGSPGS--PGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP-MGIRGD 1156
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 6 PQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPC 57
P+ RG G+L + P P +Q G PG PG P LGPC
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQ--GEPGPPGPPGNLGPC 1387
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
+G G G++ PG GSPG+PG P P GP
Sbjct: 400 KGSKGERGRPGKDAMGTPGSPGC------AGSPGLPGSPGPPGP 437
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G Q + G G G +++ PG GSPG+PGH +GP +
Sbjct: 824 GLKGQQGRRGKTGPKGDPGIPGLDRSGFPGE---------TGSPGIPGHQGEMGPLGQRG 874
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG--SERSPRPRTGTR 119
P D +G + P G I P RG G + R G +
Sbjct: 875 YPGNPGILGPPGEDGVIGMMGFP-GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAK 933
Query: 120 GE 121
GE
Sbjct: 934 GE 935
Score = 27.7 bits (60), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G PG PG P P+GP
Sbjct: 181 PQGLPGPPGFPGPVGP 196
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 14 GGNGSLDYFGQNQAS-------PPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G G +Y+ Q PPG A P G PG+PG P P
Sbjct: 339 GFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRP 388
Score = 27.3 bits (59), Expect = 7.8
Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 12 GRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPP 71
G G F Q P + +QP G G+PG P G + L P
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGL-----DGIP 571
Query: 72 GTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GT GV L P G + +S +K G GS SP P
Sbjct: 572 GT--PGVKGLPGPKGEL---ALSGEKGDQGPPGDPGSPGSPGP 609
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG 72
PG + P G PG PG P GP PR A PG
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPG 821
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 35.4 bits (80), Expect = 0.029
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 26 QASPPGRHSAN-PVIQPVGSPGMPGHPSPLGP 56
+A P G S + PV P G PG PGHP P GP
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Score = 31.2 bits (69), Expect = 0.54
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 41 PVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGK-QISRQKQK 99
P G PG PG P P GP P+ GT GV P G + ++S
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGT--QGVPGAPGPPGEAGPRGELSVSTPV 654
Query: 100 PCMRGPAGSERSPRPR 115
P GP G P P+
Sbjct: 655 PGPPGPPGPPGHPGPQ 670
Score = 31.2 bits (69), Expect = 0.54
Identities = 42/137 (30%), Positives = 48/137 (35%), Gaps = 28/137 (20%)
Query: 2 GYPAPQA--------KTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPS 52
G+P P +T RG GS G PPG H VI G G GHP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSH----VIGIKGDKGSMGHPG 1277
Query: 53 PLGPCNHQWLRPRTA--TFPPGTWDV-GVGSLTKP---TGFIIGKQISRQKQKPCMRGPA 106
P GP P TA PPG G L P GF + +K P G
Sbjct: 1278 PKGP-------PGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSI 1330
Query: 107 G--SERSPRPRTGTRGE 121
G P+ G RG+
Sbjct: 1331 GPPGPIGPKGPPGVRGD 1347
Score = 30.4 bits (67), Expect = 0.92
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 6 PQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPR 65
P+ RG G+L + P P +Q G PG PG P LGPC + +
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQ--GEPGPPGPPGNLGPCGPRGKPGK 1395
Query: 66 TATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
PGT P G K K +P GPAGS+ P + G RG+
Sbjct: 1396 DG--KPGT--------PGPAG---EKGNKGSKGEP---GPAGSDGLPGLK-GKRGD 1434
Score = 30.0 bits (66), Expect = 1.2
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQ-------PVGSPGMPGHPSPLGPCNHQWLRPR 65
+G G Y + PPG + +P + +G PG PGH P G P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPGP-TGDPGLPGDMGKKGEMGQPGPPGHLGPAG--------PE 1100
Query: 66 TATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGP---AGSERSPRPRTGTRGE 121
A PG+ G+ P G + K I P +RGP G SP P G RG+
Sbjct: 1101 GAPGSPGS--PGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP-MGIRGD 1156
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
+G G G++ PG GSPG+PG P P GP
Sbjct: 400 KGSKGERGRPGKDAMGTPGSPGC------AGSPGLPGSPGPPGP 437
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G Q + G G G +++ PG GSPG+PGH +GP +
Sbjct: 824 GLKGQQGRRGKTGPKGDPGIPGLDRSGFPGE---------TGSPGIPGHQGEMGPLGQRG 874
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG--SERSPRPRTGTR 119
P D +G + P G I P RG G + R G +
Sbjct: 875 YPGNPGILGPPGEDGVIGMMGFP-GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAK 933
Query: 120 GE 121
GE
Sbjct: 934 GE 935
Score = 27.7 bits (60), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G PG PG P P+GP
Sbjct: 181 PQGLPGPPGFPGPVGP 196
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 14 GGNGSLDYFGQNQAS-------PPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G G +Y+ Q PPG A P G PG+PG P P
Sbjct: 339 GFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRP 388
Score = 27.3 bits (59), Expect = 7.8
Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 12 GRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPP 71
G G F Q P + +QP G G+PG P G + L P
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGL-----DGIP 571
Query: 72 GTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GT GV L P G + +S +K G GS SP P
Sbjct: 572 GT--PGVKGLPGPKGEL---ALSGEKGDQGPPGDPGSPGSPGP 609
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG 72
PG + P G PG PG P GP PR A PG
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPG 821
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 35.4 bits (80), Expect = 0.029
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 26 QASPPGRHSAN-PVIQPVGSPGMPGHPSPLGP 56
+A P G S + PV P G PG PGHP P GP
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Score = 31.2 bits (69), Expect = 0.54
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 41 PVGSPGMPGHPSPLGPCNHQWLRPRTATFPPGTWDVGVGSLTKPTGFIIGK-QISRQKQK 99
P G PG PG P P GP P+ GT GV P G + ++S
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGT--QGVPGAPGPPGEAGPRGELSVSTPV 654
Query: 100 PCMRGPAGSERSPRPR 115
P GP G P P+
Sbjct: 655 PGPPGPPGPPGHPGPQ 670
Score = 31.2 bits (69), Expect = 0.54
Identities = 42/137 (30%), Positives = 48/137 (35%), Gaps = 28/137 (20%)
Query: 2 GYPAPQA--------KTEGRGGNGSLDYFGQ-NQASPPGRHSANPVIQPVGSPGMPGHPS 52
G+P P +T RG GS G PPG H VI G G GHP
Sbjct: 1222 GFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSH----VIGIKGDKGSMGHPG 1277
Query: 53 PLGPCNHQWLRPRTA--TFPPGTWDV-GVGSLTKP---TGFIIGKQISRQKQKPCMRGPA 106
P GP P TA PPG G L P GF + +K P G
Sbjct: 1278 PKGP-------PGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSI 1330
Query: 107 G--SERSPRPRTGTRGE 121
G P+ G RG+
Sbjct: 1331 GPPGPIGPKGPPGVRGD 1347
Score = 30.4 bits (67), Expect = 0.92
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 6 PQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPR 65
P+ RG G+L + P P +Q G PG PG P LGPC + +
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQ--GEPGPPGPPGNLGPCGPRGKPGK 1395
Query: 66 TATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRPRTGTRGE 121
PGT P G K K +P GPAGS+ P + G RG+
Sbjct: 1396 DG--KPGT--------PGPAG---EKGNKGSKGEP---GPAGSDGLPGLK-GKRGD 1434
Score = 30.0 bits (66), Expect = 1.2
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQ-------PVGSPGMPGHPSPLGPCNHQWLRPR 65
+G G Y + PPG + +P + +G PG PGH P G P
Sbjct: 1050 QGDKGEPGYSEGTRPGPPGP-TGDPGLPGDMGKKGEMGQPGPPGHLGPAG--------PE 1100
Query: 66 TATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGP---AGSERSPRPRTGTRGE 121
A PG+ G+ P G + K I P +RGP G SP P G RG+
Sbjct: 1101 GAPGSPGS--PGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGP-MGIRGD 1156
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 13 RGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGP 56
+G G G++ PG GSPG+PG P P GP
Sbjct: 400 KGSKGERGRPGKDAMGTPGSPGC------AGSPGLPGSPGPPGP 437
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 2 GYPAPQAKTEGRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQW 61
G Q + G G G +++ PG GSPG+PGH +GP +
Sbjct: 824 GLKGQQGRRGKTGPKGDPGIPGLDRSGFPGE---------TGSPGIPGHQGEMGPLGQRG 874
Query: 62 LRPRTATFPPGTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAG--SERSPRPRTGTR 119
P D +G + P G I P RG G + R G +
Sbjct: 875 YPGNPGILGPPGEDGVIGMMGFP-GAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAK 933
Query: 120 GE 121
GE
Sbjct: 934 GE 935
Score = 27.7 bits (60), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 41 PVGSPGMPGHPSPLGP 56
P G PG PG P P+GP
Sbjct: 181 PQGLPGPPGFPGPVGP 196
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 14 GGNGSLDYFGQNQAS-------PPGRHSANPVIQPVGSPGMPGHPSPLGP 56
G G +Y+ Q PPG A P G PG+PG P P
Sbjct: 339 GFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSPGSSRP 388
Score = 27.3 bits (59), Expect = 7.8
Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 12 GRGGNGSLDYFGQNQASPPGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPP 71
G G F Q P + +QP G G+PG P G + L P
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGL-----DGIP 571
Query: 72 GTWDVGVGSLTKPTGFIIGKQISRQKQKPCMRGPAGSERSPRP 114
GT GV L P G + +S +K G GS SP P
Sbjct: 572 GT--PGVKGLPGPKGEL---ALSGEKGDQGPPGDPGSPGSPGP 609
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 30 PGRHSANPVIQPVGSPGMPGHPSPLGPCNHQWLRPRTATFPPG 72
PG + P G PG PG P GP PR A PG
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPG 821
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,335,377
Number of Sequences: 37866
Number of extensions: 648862
Number of successful extensions: 4878
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 2106
Number of HSP's gapped (non-prelim): 1898
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.