Guide to the Human Genome
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Name: LOC100132410 Sequence: fasta or formatted (131aa) NCBI GI: 169166247
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         21           6
 C cysteine            3.1          4           1
 D aspartate           4.6          6           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.1          8           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             6.9          9           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            18.3         24           2
 Q glutamine           3.8          5           1
 R arginine            7.6         10           2
 S serine              8.4         11           2
 T threonine           5.3          7           1
 V valine              3.1          4           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133270          1.000   PREDICTED: hypothetical protein 
LOC100132315          0.976   PREDICTED: hypothetical protein 
LOC100131722          0.972   PREDICTED: hypothetical protein 
LOC100132752          0.969   PREDICTED: hypothetical protein 
LOC100131591          0.969   PREDICTED: hypothetical protein 
LOC100131722          0.969   PREDICTED: hypothetical protein 
LOC100131591          0.965   PREDICTED: hypothetical protein 
LOC100128869          0.965   PREDICTED: hypothetical protein 
LOC100128869          0.933   PREDICTED: hypothetical protein 
LOC100132829          0.925   PREDICTED: hypothetical protein 
LOC100133002          0.917   PREDICTED: hypothetical protein 
LOC100132117          0.917   PREDICTED: hypothetical protein 
LOC100132213          0.917   PREDICTED: hypothetical protein 
LOC100129002          0.913   PREDICTED: hypothetical protein 
LOC100132483          0.898   PREDICTED: hypothetical protein 
LOC100133083          0.894   PREDICTED: hypothetical protein 
LOC100131850          0.890   PREDICTED: hypothetical protein 
LOC100131968          0.878   PREDICTED: hypothetical protein 
LOC100131850          0.732   PREDICTED: hypothetical protein 
AMOT                  0.047   angiomotin isoform 2 
AMOT                  0.047   angiomotin isoform 1 
ANKRD43               0.047   ankyrin repeat domain 43 
HES7                  0.043   hairy and enhancer of split 7 
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
LOC389333             0.043   hypothetical protein LOC389333 
C2orf55               0.043   hypothetical protein LOC343990 
ATXN2                 0.039   ataxin 2 
MAP7                  0.039   microtubule-associated protein 7 
CASKIN1               0.039   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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