Guide to the Human Genome
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Name: LOC100132315 Sequence: fasta or formatted (131aa) NCBI GI: 169166237
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         22           7
 C cysteine            3.1          4           1
 D aspartate           3.8          5           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.1          8           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             6.1          8           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            18.3         24           2
 Q glutamine           3.8          5           1
 R arginine            7.6         10           2
 S serine              9.2         12           2
 T threonine           5.3          7           1
 V valine              3.1          4           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131722          0.996   PREDICTED: hypothetical protein 
LOC100132752          0.992   PREDICTED: hypothetical protein 
LOC100131591          0.992   PREDICTED: hypothetical protein 
LOC100131722          0.992   PREDICTED: hypothetical protein 
LOC100131591          0.988   PREDICTED: hypothetical protein 
LOC100128869          0.984   PREDICTED: hypothetical protein 
LOC100133270          0.980   PREDICTED: hypothetical protein 
LOC100132410          0.980   PREDICTED: hypothetical protein 
LOC100128869          0.953   PREDICTED: hypothetical protein 
LOC100132829          0.949   PREDICTED: hypothetical protein 
LOC100133002          0.941   PREDICTED: hypothetical protein 
LOC100132117          0.941   PREDICTED: hypothetical protein 
LOC100132213          0.941   PREDICTED: hypothetical protein 
LOC100129002          0.933   PREDICTED: hypothetical protein 
LOC100132483          0.921   PREDICTED: hypothetical protein 
LOC100133083          0.913   PREDICTED: hypothetical protein 
LOC100131850          0.901   PREDICTED: hypothetical protein 
LOC100131968          0.901   PREDICTED: hypothetical protein 
LOC100131850          0.743   PREDICTED: hypothetical protein 
LOC285556             0.055   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.055   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.055   PREDICTED: hypothetical protein LOC285556 
MAP7                  0.055   microtubule-associated protein 7 
LOC389333             0.051   hypothetical protein LOC389333 
NACA                  0.047   nascent polypeptide-associated complex alpha subuni...
C2orf55               0.047   hypothetical protein LOC343990 
HES7                  0.043   hairy and enhancer of split 7 
ANKRD43               0.043   ankyrin repeat domain 43 
CASKIN1               0.040   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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