Guide to the Human Genome
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Name: LOC100132483 Sequence: fasta or formatted (131aa) NCBI GI: 169166225
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         22           7
 C cysteine            3.1          4           1
 D aspartate           2.3          3           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.9          9           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.3          7           2
 M methionine          1.5          2           1
 N asparagine          0.8          1           1
 P proline            16.8         22           2
 Q glutamine           5.3          7           1
 R arginine            9.2         12           2
 S serine              7.6         10           2
 T threonine           5.3          7           1
 V valine              3.8          5           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128869          0.964   PREDICTED: hypothetical protein 
LOC100132829          0.937   PREDICTED: hypothetical protein 
LOC100131722          0.933   PREDICTED: hypothetical protein 
LOC100128869          0.933   PREDICTED: hypothetical protein 
LOC100129002          0.929   PREDICTED: hypothetical protein 
LOC100132213          0.929   PREDICTED: hypothetical protein 
LOC100132315          0.925   PREDICTED: hypothetical protein 
LOC100131722          0.917   PREDICTED: hypothetical protein 
LOC100132752          0.917   PREDICTED: hypothetical protein 
LOC100131591          0.917   PREDICTED: hypothetical protein 
LOC100131591          0.909   PREDICTED: hypothetical protein 
LOC100133270          0.905   PREDICTED: hypothetical protein 
LOC100132410          0.905   PREDICTED: hypothetical protein 
LOC100133002          0.905   PREDICTED: hypothetical protein 
LOC100132117          0.905   PREDICTED: hypothetical protein 
LOC100133083          0.901   PREDICTED: hypothetical protein 
LOC100131850          0.897   PREDICTED: hypothetical protein 
LOC100131968          0.877   PREDICTED: hypothetical protein 
LOC100131850          0.746   PREDICTED: hypothetical protein 
LOC285556             0.048   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.048   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.048   PREDICTED: hypothetical protein LOC285556 
MAP7                  0.040   microtubule-associated protein 7 
FAM48B1               0.040   hypothetical protein LOC100130302 
MAZ                   0.040   MYC-associated zinc finger protein isoform 2 
MAZ                   0.040   MYC-associated zinc finger protein isoform 1 
RSBN1                 0.040   round spermatid basic protein 1 
CCDC24                0.040   coiled-coil domain containing 24 
LOC389333             0.036   hypothetical protein LOC389333 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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