Guide to the Human Genome
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Name: LOC100129002 Sequence: fasta or formatted (131aa) NCBI GI: 169166245
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {185aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         22           7
 C cysteine            3.8          5           1
 D aspartate           3.1          4           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.9          9           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.3          7           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            16.8         22           2
 Q glutamine           4.6          6           1
 R arginine            7.6         10           2
 S serine              9.2         12           2
 T threonine           5.3          7           1
 V valine              3.8          5           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132829          0.968   PREDICTED: hypothetical protein 
LOC100128869          0.953   PREDICTED: hypothetical protein 
LOC100131722          0.945   PREDICTED: hypothetical protein 
LOC100131850          0.945   PREDICTED: hypothetical protein 
LOC100128869          0.945   PREDICTED: hypothetical protein 
LOC100132213          0.941   PREDICTED: hypothetical protein 
LOC100132315          0.933   PREDICTED: hypothetical protein 
LOC100131722          0.929   PREDICTED: hypothetical protein 
LOC100132752          0.925   PREDICTED: hypothetical protein 
LOC100131591          0.925   PREDICTED: hypothetical protein 
LOC100132483          0.925   PREDICTED: hypothetical protein 
LOC100131591          0.921   PREDICTED: hypothetical protein 
LOC100133083          0.921   PREDICTED: hypothetical protein 
LOC100133270          0.917   PREDICTED: hypothetical protein 
LOC100132410          0.917   PREDICTED: hypothetical protein 
LOC100133002          0.913   PREDICTED: hypothetical protein 
LOC100132117          0.913   PREDICTED: hypothetical protein 
LOC100131968          0.897   PREDICTED: hypothetical protein 
LOC100131850          0.787   PREDICTED: hypothetical protein 
IRS2                  0.055   insulin receptor substrate 2 
MAP7                  0.051   microtubule-associated protein 7 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
AMOT                  0.043   angiomotin isoform 2 
AMOT                  0.043   angiomotin isoform 1 
LOC100133142          0.043   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.043   PREDICTED: similar to zinc finger protein 208 [Homo...
FAM48B1               0.043   hypothetical protein LOC100130302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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