Guide to the Human Genome
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Name: LOC100131968 Sequence: fasta or formatted (130aa) NCBI GI: 169166229
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         20           5
 C cysteine            4.6          6           3
 D aspartate           3.1          4           2
 E glutamate           3.1          4           1
 F phenylalanine       4.6          6           2
 G glycine             6.2          8           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.4          7           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            17.7         23           2
 Q glutamine           3.8          5           1
 R arginine            6.9          9           2
 S serine             10.0         13           2
 T threonine           5.4          7           1
 V valine              3.8          5           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128869          0.909   PREDICTED: hypothetical protein 
LOC100128869          0.905   PREDICTED: hypothetical protein 
LOC100132315          0.901   PREDICTED: hypothetical protein 
LOC100132829          0.901   PREDICTED: hypothetical protein 
LOC100131722          0.897   PREDICTED: hypothetical protein 
LOC100129002          0.897   PREDICTED: hypothetical protein 
LOC100131722          0.897   PREDICTED: hypothetical protein 
LOC100131591          0.893   PREDICTED: hypothetical protein 
LOC100132752          0.893   PREDICTED: hypothetical protein 
LOC100131591          0.893   PREDICTED: hypothetical protein 
LOC100132213          0.893   PREDICTED: hypothetical protein 
LOC100133270          0.881   PREDICTED: hypothetical protein 
LOC100132410          0.881   PREDICTED: hypothetical protein 
LOC100133083          0.877   PREDICTED: hypothetical protein 
LOC100132483          0.874   PREDICTED: hypothetical protein 
LOC100133002          0.866   PREDICTED: hypothetical protein 
LOC100132117          0.866   PREDICTED: hypothetical protein 
LOC100131850          0.862   PREDICTED: hypothetical protein 
LOC100131850          0.715   PREDICTED: hypothetical protein 
MAP7                  0.071   microtubule-associated protein 7 
NACA                  0.059   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.047   proteoglycan 4 isoform D 
PRG4                  0.047   proteoglycan 4 isoform C 
PRG4                  0.047   proteoglycan 4 isoform B 
PRG4                  0.047   proteoglycan 4 isoform A 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.047   PREDICTED: hypothetical protein LOC285556 
WHSC2                 0.043   Wolf-Hirschhorn syndrome candidate 2 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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