Guide to the Human Genome
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Name: LOC100132829 Sequence: fasta or formatted (131aa) NCBI GI: 169166233
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         21           7
 C cysteine            3.1          4           1
 D aspartate           3.1          4           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.1          8           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.3          7           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            16.8         22           2
 Q glutamine           4.6          6           1
 R arginine            8.4         11           2
 S serine              9.9         13           2
 T threonine           5.3          7           1
 V valine              4.6          6           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128869          0.976   PREDICTED: hypothetical protein 
LOC100129002          0.976   PREDICTED: hypothetical protein 
LOC100131722          0.964   PREDICTED: hypothetical protein 
LOC100128869          0.964   PREDICTED: hypothetical protein 
LOC100132213          0.960   PREDICTED: hypothetical protein 
LOC100132315          0.956   PREDICTED: hypothetical protein 
LOC100131722          0.948   PREDICTED: hypothetical protein 
LOC100132752          0.948   PREDICTED: hypothetical protein 
LOC100131591          0.948   PREDICTED: hypothetical protein 
LOC100131850          0.940   PREDICTED: hypothetical protein 
LOC100131591          0.940   PREDICTED: hypothetical protein 
LOC100132483          0.940   PREDICTED: hypothetical protein 
LOC100133270          0.936   PREDICTED: hypothetical protein 
LOC100132410          0.936   PREDICTED: hypothetical protein 
LOC100133002          0.932   PREDICTED: hypothetical protein 
LOC100132117          0.932   PREDICTED: hypothetical protein 
LOC100133083          0.932   PREDICTED: hypothetical protein 
LOC100131968          0.908   PREDICTED: hypothetical protein 
LOC100131850          0.781   PREDICTED: hypothetical protein 
MAP7                  0.056   microtubule-associated protein 7 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
LOC389333             0.044   hypothetical protein LOC389333 
AMOT                  0.044   angiomotin isoform 2 
AMOT                  0.044   angiomotin isoform 1 
C2orf55               0.044   hypothetical protein LOC343990 
MAGEC1                0.040   melanoma antigen family C, 1 
CASKIN1               0.040   CASK interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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