Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132213 Sequence: fasta or formatted (131aa) NCBI GI: 169166227
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         21           4
 C cysteine            3.8          5           1
 D aspartate           3.1          4           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.1          8           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.3          7           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            17.6         23           2
 Q glutamine           4.6          6           1
 R arginine            8.4         11           2
 S serine              9.2         12           2
 T threonine           6.1          8           1
 V valine              3.8          5           2
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128869          0.968   PREDICTED: hypothetical protein 
LOC100132829          0.960   PREDICTED: hypothetical protein 
LOC100131722          0.956   PREDICTED: hypothetical protein 
LOC100128869          0.956   PREDICTED: hypothetical protein 
LOC100129002          0.948   PREDICTED: hypothetical protein 
LOC100132315          0.948   PREDICTED: hypothetical protein 
LOC100131722          0.940   PREDICTED: hypothetical protein 
LOC100132752          0.940   PREDICTED: hypothetical protein 
LOC100131591          0.940   PREDICTED: hypothetical protein 
LOC100131591          0.932   PREDICTED: hypothetical protein 
LOC100132483          0.932   PREDICTED: hypothetical protein 
LOC100133270          0.928   PREDICTED: hypothetical protein 
LOC100132410          0.928   PREDICTED: hypothetical protein 
LOC100133002          0.928   PREDICTED: hypothetical protein 
LOC100132117          0.928   PREDICTED: hypothetical protein 
LOC100133083          0.924   PREDICTED: hypothetical protein 
LOC100131850          0.920   PREDICTED: hypothetical protein 
LOC100131968          0.900   PREDICTED: hypothetical protein 
LOC100131850          0.761   PREDICTED: hypothetical protein 
LOC389333             0.056   hypothetical protein LOC389333 
MAP7                  0.048   microtubule-associated protein 7 
PDLIM5                0.048   PDZ and LIM domain 5 isoform a 
LOC285556             0.044   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.044   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.044   PREDICTED: hypothetical protein LOC285556 
AMOT                  0.044   angiomotin isoform 2 
AMOT                  0.044   angiomotin isoform 1 
C2orf55               0.044   hypothetical protein LOC343990 
BCORL1                0.044   BCL6 co-repressor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press