Guide to the Human Genome
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Name: LOC100133002 Sequence: fasta or formatted (138aa) NCBI GI: 239742407
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         20           7
 C cysteine            2.9          4           1
 D aspartate           3.6          5           2
 E glutamate           2.9          4           1
 F phenylalanine       4.3          6           2
 G glycine             8.0         11           2
 H histidine           1.4          2           1
 I isoleucine          1.4          2           1
 K lysine              2.9          4           1
 L leucine             6.5          9           2
 M methionine          2.2          3           1
 N asparagine          0.0          0           0
 P proline            15.9         22           2
 Q glutamine           5.1          7           2
 R arginine            8.0         11           2
 S serine              9.4         13           2
 T threonine           6.5          9           3
 V valine              2.9          4           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132117          1.000   PREDICTED: hypothetical protein 
LOC100131722          0.906   PREDICTED: hypothetical protein 
LOC100131722          0.898   PREDICTED: hypothetical protein 
LOC100132315          0.898   PREDICTED: hypothetical protein 
LOC100128869          0.891   PREDICTED: hypothetical protein 
LOC100132752          0.891   PREDICTED: hypothetical protein 
LOC100131591          0.891   PREDICTED: hypothetical protein 
LOC100132829          0.883   PREDICTED: hypothetical protein 
LOC100131591          0.883   PREDICTED: hypothetical protein 
LOC100128869          0.883   PREDICTED: hypothetical protein 
LOC100133270          0.879   PREDICTED: hypothetical protein 
LOC100132410          0.879   PREDICTED: hypothetical protein 
LOC100132213          0.879   PREDICTED: hypothetical protein 
LOC100129002          0.872   PREDICTED: hypothetical protein 
LOC100132483          0.860   PREDICTED: hypothetical protein 
LOC100131850          0.857   PREDICTED: hypothetical protein 
LOC100133083          0.853   PREDICTED: hypothetical protein 
LOC100131968          0.826   PREDICTED: hypothetical protein 
LOC100131850          0.702   PREDICTED: hypothetical protein 
LOC285556             0.045   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.045   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.045   PREDICTED: hypothetical protein LOC285556 
SETD1B                0.045   SET domain containing 1B 
LOC389333             0.045   hypothetical protein LOC389333 
LOC100292818          0.042   PREDICTED: hypothetical protein 
LOC100290830          0.042   PREDICTED: hypothetical protein XP_002346568 
LOC100289598          0.042   PREDICTED: hypothetical protein XP_002342405 
HES7                  0.042   hairy and enhancer of split 7 
FOXF2                 0.038   forkhead box F2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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