Guide to the Human Genome
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Name: LOC100128869 Sequence: fasta or formatted (131aa) NCBI GI: 169167095
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         22           7
 C cysteine            3.1          4           1
 D aspartate           3.1          4           2
 E glutamate           2.3          3           1
 F phenylalanine       4.6          6           2
 G glycine             6.9          9           2
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             5.3          7           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            17.6         23           2
 Q glutamine           4.6          6           1
 R arginine            7.6         10           2
 S serine              9.2         12           2
 T threonine           5.3          7           1
 V valine              3.8          5           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132829          0.972   PREDICTED: hypothetical protein 
LOC100131722          0.968   PREDICTED: hypothetical protein 
LOC100128869          0.968   PREDICTED: hypothetical protein 
LOC100132483          0.964   PREDICTED: hypothetical protein 
LOC100132213          0.964   PREDICTED: hypothetical protein 
LOC100129002          0.956   PREDICTED: hypothetical protein 
LOC100132315          0.956   PREDICTED: hypothetical protein 
LOC100131722          0.952   PREDICTED: hypothetical protein 
LOC100132752          0.952   PREDICTED: hypothetical protein 
LOC100131591          0.952   PREDICTED: hypothetical protein 
LOC100131591          0.944   PREDICTED: hypothetical protein 
LOC100133270          0.940   PREDICTED: hypothetical protein 
LOC100132410          0.940   PREDICTED: hypothetical protein 
LOC100133002          0.937   PREDICTED: hypothetical protein 
LOC100132117          0.937   PREDICTED: hypothetical protein 
LOC100133083          0.937   PREDICTED: hypothetical protein 
LOC100131850          0.925   PREDICTED: hypothetical protein 
LOC100131968          0.909   PREDICTED: hypothetical protein 
LOC100131850          0.766   PREDICTED: hypothetical protein 
NACA                  0.060   nascent polypeptide-associated complex alpha subuni...
LOC389333             0.052   hypothetical protein LOC389333 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.052   PREDICTED: hypothetical protein LOC285556 
MAP7                  0.052   microtubule-associated protein 7 
C2orf55               0.048   hypothetical protein LOC343990 
CASKIN1               0.044   CASK interacting protein 1 
AMOT                  0.044   angiomotin isoform 2 
AMOT                  0.044   angiomotin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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