Guide to the Human Genome
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Name: LOC100133083 Sequence: fasta or formatted (131aa) NCBI GI: 169166231
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         19           3
 C cysteine            3.1          4           1
 D aspartate           3.1          4           2
 E glutamate           1.5          2           1
 F phenylalanine       5.3          7           2
 G glycine             6.1          8           2
 H histidine           3.1          4           1
 I isoleucine          1.5          2           1
 K lysine              3.1          4           1
 L leucine             6.1          8           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            16.8         22           2
 Q glutamine           5.3          7           2
 R arginine            7.6         10           2
 S serine              8.4         11           2
 T threonine           6.1          8           1
 V valine              5.3          7           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128869          0.933   PREDICTED: hypothetical protein 
LOC100132829          0.925   PREDICTED: hypothetical protein 
LOC100131722          0.921   PREDICTED: hypothetical protein 
LOC100128869          0.921   PREDICTED: hypothetical protein 
LOC100129002          0.921   PREDICTED: hypothetical protein 
LOC100132213          0.917   PREDICTED: hypothetical protein 
LOC100132315          0.913   PREDICTED: hypothetical protein 
LOC100131591          0.909   PREDICTED: hypothetical protein 
LOC100131722          0.905   PREDICTED: hypothetical protein 
LOC100132752          0.905   PREDICTED: hypothetical protein 
LOC100131591          0.905   PREDICTED: hypothetical protein 
LOC100133270          0.897   PREDICTED: hypothetical protein 
LOC100132410          0.897   PREDICTED: hypothetical protein 
LOC100132483          0.897   PREDICTED: hypothetical protein 
LOC100133002          0.893   PREDICTED: hypothetical protein 
LOC100132117          0.893   PREDICTED: hypothetical protein 
LOC100131850          0.893   PREDICTED: hypothetical protein 
LOC100131968          0.877   PREDICTED: hypothetical protein 
LOC100131850          0.731   PREDICTED: hypothetical protein 
LOC389333             0.043   hypothetical protein LOC389333 
MAP7                  0.040   microtubule-associated protein 7 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
CASKIN1               0.032   CASK interacting protein 1 
LOC100133142          0.032   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.032   PREDICTED: similar to zinc finger protein 208 [Homo...
FBLN2                 0.032   fibulin 2 isoform b precursor 
FBLN2                 0.032   fibulin 2 isoform a precursor 
ATXN2                 0.028   ataxin 2 
MAPK1IP1L             0.028   MAPK-interacting and spindle-stabilizing protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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