Guide to the Human Genome
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Name: LOC100129002 Sequence: fasta or formatted (185aa) NCBI GI: 169167103
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         18           2
 C cysteine            3.2          6           1
 D aspartate           3.2          6           1
 E glutamate           4.3          8           2
 F phenylalanine       1.6          3           1
 G glycine            11.4         21           2
 H histidine           3.2          6           1
 I isoleucine          2.7          5           2
 K lysine              1.1          2           1
 L leucine            10.8         20           2
 M methionine          1.6          3           1
 N asparagine          0.5          1           1
 P proline            12.4         23           2
 Q glutamine           4.9          9           1
 R arginine            6.5         12           2
 S serine             10.8         20           3
 T threonine           5.4         10           2
 V valine              4.3          8           2
 W tryptophan          1.6          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128747          0.975   PREDICTED: hypothetical protein 
LOC100128747          0.511   PREDICTED: hypothetical protein 
TTBK1                 0.050   tau tubulin kinase 1 
TBC1D10B              0.033   TBC1 domain family, member 10B 
LOC100291609          0.019   PREDICTED: hypothetical protein XP_002346061 
RUSC2                 0.019   RUN and SH3 domain containing 2 
RUSC2                 0.019   RUN and SH3 domain containing 2 
COL6A6                0.019   collagen type VI alpha 6 
LOC100131455          0.019   PREDICTED: hypothetical protein 
LOC100131455          0.019   PREDICTED: hypothetical protein 
MAST4                 0.019   microtubule associated serine/threonine kinase fami...
HCN4                  0.019   hyperpolarization activated cyclic nucleotide-gated p...
RECQL4                0.019   RecQ protein-like 4 
LOC100292637          0.019   PREDICTED: hypothetical protein 
LOC100288092          0.019   PREDICTED: hypothetical protein 
LOC100133305          0.019   PREDICTED: hypothetical protein 
LOC100133305          0.019   PREDICTED: hypothetical protein 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
SETD1A                0.017   SET domain containing 1A 
COL17A1               0.017   alpha 1 type XVII collagen 
TSC22D2               0.017   TSC22 domain family, member 2 
PRR18                 0.017   proline rich region 18 
BTBD2                 0.017   BTB (POZ) domain containing 2 
LOC100131455          0.017   PREDICTED: hypothetical protein 
HEMGN                 0.017   hemogen 
HEMGN                 0.017   hemogen 
DMRTA2                0.017   DMRT-like family A2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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