Guide to the Human Genome
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Name: LOC648152 Sequence: fasta or formatted (386aa) NCBI GI: 169165926
Description:

PREDICTED: similar to ataxia telangiectasia and Rad3 related protein, partial

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         16           2
 C cysteine            2.6         10           1
 D aspartate           4.1         16           2
 E glutamate           7.3         28           1
 F phenylalanine       4.1         16           1
 G glycine             6.5         25           1
 H histidine           3.9         15           1
 I isoleucine          5.4         21           2
 K lysine              6.5         25           2
 L leucine            11.4         44           2
 M methionine          4.4         17           2
 N asparagine          3.9         15           2
 P proline             6.2         24           2
 Q glutamine           2.1          8           1
 R arginine            6.2         24           3
 S serine              5.4         21           2
 T threonine           5.4         21           1
 V valine              6.0         23           2
 W tryptophan          1.6          6           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ataxia telangiectasia and Rad... 
ATR                   1.000   ataxia telangiectasia and Rad3 related protein [Hom...
ATM                   0.255   ataxia telangiectasia mutated isoform 2 
ATM                   0.255   ataxia telangiectasia mutated isoform 1 
LOC651610             0.255   PREDICTED: similar to Serine-protein kinase ATM, pa...
MTOR                  0.222   FK506 binding protein 12-rapamycin associated protein...
LOC651921             0.209   PREDICTED: similar to ataxia telangiectasia and Rad...
SMG1                  0.207   PI-3-kinase-related kinase SMG-1 
PRKDC                 0.173   protein kinase, DNA-activated, catalytic polypeptide...
PRKDC                 0.151   protein kinase, DNA-activated, catalytic polypeptid...
LOC731751             0.151   PREDICTED: similar to protein kinase, DNA-activated...
TRRAP                 0.086   transformation/transcription domain-associated protei...
PIK3C3                0.048   catalytic phosphatidylinositol 3-kinase 3 
PIK3CG                0.037   phosphoinositide-3-kinase, catalytic, gamma polypept...
PIK3CB                0.031   catalytic phosphatidylinositol 3-kinase beta 
PIK3C2A               0.031   phosphoinositide-3-kinase, class 2 alpha polypeptid...
PIK3CD                0.030   catalytic phosphatidylinositol 3-kinase delta [Homo...
PI4KB                 0.030   catalytic phosphatidylinositol 4-kinase beta 
PI4KA                 0.024   phosphatidylinositol 4-kinase type 3 alpha isoform 1 ...
PI4KA                 0.024   phosphatidylinositol 4-kinase type 3 alpha isoform ...
PIK3C2G               0.023   phosphoinositide-3-kinase, class 2 gamma polypeptid...
PIK3CA                0.022   phosphoinositide-3-kinase, catalytic, alpha polypept...
LOC100293141          0.021   PREDICTED: similar to phosphatidylinositol 4-kinase...
PIK3C2B               0.017   phosphoinositide-3-kinase, class 2 beta polypeptide...
MYH15                 0.008   myosin, heavy polypeptide 15 
PDE6C                 0.006   phosphodiesterase 6C 
MAP2K1                0.005   mitogen-activated protein kinase kinase 1 
CCDC88A               0.005   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.005   coiled-coil domain containing 88A isoform 1 
SLC24A3               0.005   solute carrier family 24 (sodium/potassium/calcium e...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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