CCDC88A 12236

Name: CCDC88A	Sequence: fasta or formatted (1870aa)		NCBI GI: 208022632
Description: coiled-coil domain containing 88A isoform 1		Referenced in: Coiled-Coil Proteins Tubulins and Microtubules
Other entries for this name: alt prot [1843aa] coiled-coil domain containing 88A isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 74 3 C cysteine 0.6 12 1 D aspartate 4.5 85 2 E glutamate 12.8 240 3 F phenylalanine 1.7 31 1 G glycine 2.8 53 1 H histidine 2.1 40 2 I isoleucine 3.9 72 2 K lysine 10.1 189 2 L leucine 13.3 249 6 M methionine 2.3 43 2 N asparagine 5.9 110 3 P proline 2.1 39 2 Q glutamine 7.4 138 2 R arginine 5.6 105 3 S serine 9.6 179 3 T threonine 5.6 105 2 V valine 3.9 73 2 W tryptophan 0.4 7 1 Y tyrosine 1.4 26 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 88A isoform 1 CCDC88A 0.978 coiled-coil domain containing 88A isoform 2 CCDC88C 0.439 DVL-binding protein DAPLE CCDC88B 0.139 coiled-coil domain containing 88 CENPE 0.052 centromere protein E MYH10 0.051 myosin, heavy polypeptide 10, non-muscle CENPF 0.050 centromere protein F MYH11 0.048 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.048 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.048 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.048 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... GCC2 0.047 GRIP and coiled-coil domain-containing 2 EEA1 0.047 early endosome antigen 1, 162kD GOLGB1 0.046 golgi autoantigen, golgin subfamily b, macrogolgin ... MYH7 0.045 myosin, heavy chain 7, cardiac muscle, beta TRIP11 0.045 thyroid hormone receptor interactor 11 CEP250 0.045 centrosomal protein 2 MYH9 0.043 myosin, heavy polypeptide 9, non-muscle TPR 0.043 nuclear pore complex-associated protein TPR PLEC1 0.043 plectin 1 isoform 11 PLEC1 0.043 plectin 1 isoform 10 PLEC1 0.043 plectin 1 isoform 8 PLEC1 0.043 plectin 1 isoform 7 PLEC1 0.043 plectin 1 isoform 6 PLEC1 0.043 plectin 1 isoform 3 PLEC1 0.043 plectin 1 isoform 2 PLEC1 0.043 plectin 1 isoform 1 MYH8 0.043 myosin, heavy chain 8, skeletal muscle, perinatal [... MYH13 0.043 myosin, heavy polypeptide 13, skeletal muscle [Homo... TCHH 0.043 trichohyalin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.