Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATM Sequence: fasta or formatted (3056aa) NCBI GI: 71902540
Description:

ataxia telangiectasia mutated isoform 1

Referenced in:

DNases, Recombination, and DNA Repair
Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [1708aa] ataxia telangiectasia mutated isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1        157           2
 C cysteine            2.9         89           2
 D aspartate           5.1        156           2
 E glutamate           7.6        233           3
 F phenylalanine       4.0        123           2
 G glycine             3.9        119           3
 H histidine           2.4         72           2
 I isoleucine          5.9        179           2
 K lysine              7.0        214           2
 L leucine            12.7        389           3
 M methionine          2.6         79           2
 N asparagine          4.5        137           2
 P proline             3.2         98           2
 Q glutamine           5.0        154           3
 R arginine            5.0        152           2
 S serine              7.7        234           3
 T threonine           5.2        158           3
 V valine              5.9        179           3
 W tryptophan          1.2         38           1
 Y tyrosine            3.1         96           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ataxia telangiectasia mutated isoform 1 
LOC651610             0.959   PREDICTED: similar to Serine-protein kinase ATM, pa...
ATM                   0.558   ataxia telangiectasia mutated isoform 2 
ATR                   0.033   ataxia telangiectasia and Rad3 related protein [Hom...
LOC648152             0.033   PREDICTED: similar to ataxia telangiectasia and Rad...
MTOR                  0.025   FK506 binding protein 12-rapamycin associated protein...
SMG1                  0.024   PI-3-kinase-related kinase SMG-1 
PRKDC                 0.018   protein kinase, DNA-activated, catalytic polypeptide...
LOC651921             0.015   PREDICTED: similar to ataxia telangiectasia and Rad...
PRKDC                 0.014   protein kinase, DNA-activated, catalytic polypeptid...
LOC731751             0.014   PREDICTED: similar to protein kinase, DNA-activated...
PIK3C3                0.008   catalytic phosphatidylinositol 3-kinase 3 
PIK3CB                0.006   catalytic phosphatidylinositol 3-kinase beta 
PIK3CD                0.005   catalytic phosphatidylinositol 3-kinase delta [Homo...
PIK3CG                0.004   phosphoinositide-3-kinase, catalytic, gamma polypept...
TRRAP                 0.004   transformation/transcription domain-associated protei...
PI4KB                 0.004   catalytic phosphatidylinositol 4-kinase beta 
PIK3C2G               0.004   phosphoinositide-3-kinase, class 2 gamma polypeptid...
PIK3CA                0.003   phosphoinositide-3-kinase, catalytic, alpha polypept...
C14orf38              0.003   PREDICTED: hypothetical protein 
C14orf38              0.003   PREDICTED: hypothetical protein 
C14orf38              0.003   PREDICTED: hypothetical protein 
CCDC88A               0.002   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.002   coiled-coil domain containing 88A isoform 1 
PI4KA                 0.002   phosphatidylinositol 4-kinase type 3 alpha isoform 1 ...
PI4KA                 0.002   phosphatidylinositol 4-kinase type 3 alpha isoform ...
LOC100293141          0.002   PREDICTED: similar to phosphatidylinositol 4-kinase...
STK17A                0.002   serine/threonine kinase 17a 
CCDC46                0.002   coiled-coil domain containing 46 isoform a 
EIF4G2                0.002   eukaryotic translation initiation factor 4 gamma, 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press