Guide to the Human Genome
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Name: LOC100293141 Sequence: fasta or formatted (286aa) NCBI GI: 239757646
Description:

PREDICTED: similar to phosphatidylinositol 4-kinase type 3 alpha

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         31           3
 C cysteine            2.4          7           1
 D aspartate           5.9         17           2
 E glutamate           5.2         15           3
 F phenylalanine       4.9         14           1
 G glycine             8.4         24           2
 H histidine           2.1          6           1
 I isoleucine          4.5         13           2
 K lysine              4.5         13           2
 L leucine             7.7         22           3
 M methionine          2.1          6           1
 N asparagine          1.4          4           1
 P proline             4.5         13           2
 Q glutamine          10.5         30           2
 R arginine            9.1         26           2
 S serine              4.5         13           2
 T threonine           3.8         11           1
 V valine              3.5         10           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to phosphatidylinositol 4-kinase... 
PI4KA                 0.656   phosphatidylinositol 4-kinase type 3 alpha isoform 1 ...
PI4KA                 0.656   phosphatidylinositol 4-kinase type 3 alpha isoform ...
PI4KB                 0.191   catalytic phosphatidylinositol 4-kinase beta 
PIK3C2G               0.121   phosphoinositide-3-kinase, class 2 gamma polypeptid...
PIK3CG                0.116   phosphoinositide-3-kinase, catalytic, gamma polypept...
PIK3C2B               0.109   phosphoinositide-3-kinase, class 2 beta polypeptide...
PIK3C2A               0.107   phosphoinositide-3-kinase, class 2 alpha polypeptid...
PIK3CA                0.105   phosphoinositide-3-kinase, catalytic, alpha polypept...
PIK3C3                0.100   catalytic phosphatidylinositol 3-kinase 3 
PIK3CD                0.089   catalytic phosphatidylinositol 3-kinase delta [Homo...
PIK3CB                0.087   catalytic phosphatidylinositol 3-kinase beta 
MTOR                  0.041   FK506 binding protein 12-rapamycin associated protein...
ATR                   0.029   ataxia telangiectasia and Rad3 related protein [Hom...
LOC648152             0.029   PREDICTED: similar to ataxia telangiectasia and Rad...
SMARCA2               0.025   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.025   SWI/SNF-related matrix-associated actin-dependent re...
MAML2                 0.023   mastermind-like 2 
POU3F2                0.023   POU domain, class 3, transcription factor 2 
ATM                   0.023   ataxia telangiectasia mutated isoform 2 
ATM                   0.023   ataxia telangiectasia mutated isoform 1 
LOC651610             0.023   PREDICTED: similar to Serine-protein kinase ATM, pa...
SMG1                  0.021   PI-3-kinase-related kinase SMG-1 
ATXN1                 0.020   ataxin 1 
ATXN1                 0.020   ataxin 1 
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
MAML3                 0.020   mastermind-like 3 
LOC100293129          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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