Guide to the Human Genome
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Name: LOC651921 Sequence: fasta or formatted (2105aa) NCBI GI: 169218238
Description:

PREDICTED: similar to ataxia telangiectasia and Rad3 related protein, partial

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        147           2
 C cysteine            2.3         49           2
 D aspartate           5.2        110           2
 E glutamate           6.5        136           2
 F phenylalanine       4.0         85           2
 G glycine             3.9         82           2
 H histidine           3.4         71           2
 I isoleucine          5.4        114           2
 K lysine              7.1        149           3
 L leucine            13.3        281           3
 M methionine          2.9         62           2
 N asparagine          3.5         73           2
 P proline             3.4         72           2
 Q glutamine           4.8        100           3
 R arginine            4.4         92           3
 S serine              8.2        172           3
 T threonine           4.6         97           2
 V valine              5.6        118           2
 W tryptophan          1.1         24           1
 Y tyrosine            3.4         71           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ataxia telangiectasia and Rad... 
ATR                   1.000   ataxia telangiectasia and Rad3 related protein [Hom...
LOC648152             0.039   PREDICTED: similar to ataxia telangiectasia and Rad...
ATM                   0.023   ataxia telangiectasia mutated isoform 2 
ATM                   0.023   ataxia telangiectasia mutated isoform 1 
LOC651610             0.023   PREDICTED: similar to Serine-protein kinase ATM, pa...
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptid...
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptide...
LOC731751             0.006   PREDICTED: similar to protein kinase, DNA-activated...
MTOR                  0.006   FK506 binding protein 12-rapamycin associated protein...
SMG1                  0.004   PI-3-kinase-related kinase SMG-1 
CAND1                 0.003   TIP120 protein 
KRT75                 0.002   keratin 75 
YARS                  0.002   tyrosyl-tRNA synthetase 
KIAA1984              0.002   hypothetical protein LOC84960 
MDN1                  0.002   MDN1, midasin homolog 
TBL3                  0.002   transducin beta-like 3 
ABCC8                 0.002   ATP-binding cassette, sub-family C, member 8 
LRRC8E                0.002   leucine rich repeat containing 8 family, member E [H...
OVCH1                 0.002   ovochymase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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