Guide to the Human Genome
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Name: TRRAP Sequence: fasta or formatted (3830aa) NCBI GI: 4507691
Description:

transformation/transcription domain-associated protein

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        296           3
 C cysteine            2.0         75           2
 D aspartate           3.4        131           3
 E glutamate           6.7        257           3
 F phenylalanine       4.1        156           2
 G glycine             3.6        138           3
 H histidine           3.0        114           2
 I isoleucine          5.5        209           3
 K lysine              6.1        232           2
 L leucine            11.9        455           3
 M methionine          3.3        128           2
 N asparagine          4.2        161           2
 P proline             5.4        205          10
 Q glutamine           5.6        213           2
 R arginine            4.9        186           2
 S serine              6.5        250           3
 T threonine           5.5        211           2
 V valine              6.9        265           3
 W tryptophan          1.2         47           1
 Y tyrosine            2.6        101           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transformation/transcription domain-associated protei... 
ATR                   0.009   ataxia telangiectasia and Rad3 related protein [Hom...
LOC648152             0.009   PREDICTED: similar to ataxia telangiectasia and Rad...
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptide...
MTOR                  0.006   FK506 binding protein 12-rapamycin associated protein...
PRKDC                 0.006   protein kinase, DNA-activated, catalytic polypeptid...
LOC731751             0.006   PREDICTED: similar to protein kinase, DNA-activated...
SMG1                  0.004   PI-3-kinase-related kinase SMG-1 
PRR12                 0.004   proline rich 12 
HCN2                  0.004   hyperpolarization activated cyclic nucleotide-gated...
DIAPH2                0.004   diaphanous 2 isoform 12C 
DIAPH2                0.004   diaphanous 2 isoform 156 
PCLO                  0.004   piccolo isoform 2 
PCLO                  0.004   piccolo isoform 1 
FNBP4                 0.004   formin binding protein 4 
MLL4                  0.004   myeloid/lymphoid or mixed-lineage leukemia 4 
FASLG                 0.004   fas ligand 
HTT                   0.004   huntingtin 
ENAH                  0.004   enabled homolog isoform a 
ENAH                  0.004   enabled homolog isoform b 
ACR                   0.004   acrosin precursor 
ASXL3                 0.004   additional sex combs like 3 
SCAF1                 0.004   SR-related CTD-associated factor 1 
FMNL1                 0.004   formin-like 1 
ADRB1                 0.004   beta-1-adrenergic receptor 
FMNL2                 0.004   formin-like 2 
ZFHX4                 0.004   zinc finger homeodomain 4 
SETD1B                0.004   SET domain containing 1B 
RANBP9                0.004   RAN binding protein 9 
LOC645529             0.003   PREDICTED: similar to Putative acrosin-like proteas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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