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Search of human proteins with 169165345
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165345 PREDICTED: hypothetical protein [Homo sapiens] 426 e-120
gi|113414915 PREDICTED: hypothetical protein [Homo sapiens] 397 e-111
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens] 397 e-111
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 40 0.002
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 39 0.003
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 38 0.005
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 38 0.005
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s... 38 0.007
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 37 0.012
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 37 0.012
gi|7662494 Kruppel-like factor 15 [Homo sapiens] 37 0.012
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 37 0.012
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.015
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 36 0.020
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 36 0.020
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 36 0.020
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 36 0.020
gi|239755705 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 35 0.034
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|149363674 hypothetical protein LOC25758 [Homo sapiens] 35 0.045
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 35 0.045
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 35 0.045
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 35 0.058
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 35 0.058
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens] 35 0.058
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 35 0.058
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 35 0.058
>gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 426 bits (1094), Expect = e-120
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MGWRRPEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLP 60
MGWRRPEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLP
Sbjct: 1 MGWRRPEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLP 60
Query: 61 AGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPR 120
AGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPR
Sbjct: 61 AGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPR 120
Query: 121 RLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKEVANLLFSHCCVLEGC 180
RLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKEVANLLFSHCCVLEGC
Sbjct: 121 RLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKEVANLLFSHCCVLEGC 180
Query: 181 GAMIPLLKILLNASPLCCSLNNEDI 205
GAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 GAMIPLLKILLNASPLCCSLNNEDI 205
>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 397 bits (1021), Expect = e-111
Identities = 198/220 (90%), Positives = 198/220 (90%), Gaps = 15/220 (6%)
Query: 1 MGWRRPEVGGPTYRRPAGVSGTRSIRAP---------------AFSPEPAGSRDGGAQGP 45
MGWRR E GGPTYRRPAGVSGTR IRAP A PAGSRDGGAQGP
Sbjct: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
Query: 46 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 105
VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
Query: 106 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 165
LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
Query: 166 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 205
VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 397 bits (1021), Expect = e-111
Identities = 198/220 (90%), Positives = 198/220 (90%), Gaps = 15/220 (6%)
Query: 1 MGWRRPEVGGPTYRRPAGVSGTRSIRAP---------------AFSPEPAGSRDGGAQGP 45
MGWRR E GGPTYRRPAGVSGTR IRAP A PAGSRDGGAQGP
Sbjct: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
Query: 46 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 105
VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
Query: 106 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 165
LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
Query: 166 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 205
VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 16 PAG--VSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPP 73
PAG + +RS+ P PA + + G +SS G P P GPHP L +
Sbjct: 420 PAGGALQHSRSMSMPVAHSPPAAT----SPGSLSSSSGHGSGSYPPPPGPHPPLPHPLHH 475
Query: 74 VPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPH-PRRLSSLPLHAPAG 132
P +R SG A + G + L E GS L FC+ + P ++ P G
Sbjct: 476 GPGQRPSSGSASASGSPSDPG-FMSLDEYGSSPGDLRAFCSHRSNTPESIAETPPARDGG 534
Query: 133 QG 134
G
Sbjct: 535 GG 536
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 20 SGTRSIRAPAFSPEPAGSRDGGAQGPVSS---------GRIQGGSRRPLPAGPHPGLSAE 70
S +S + A S P GS DG SS S +P P P PG
Sbjct: 984 SSPKSPKPGAPSGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPPPAPGELYR 1043
Query: 71 VPPVPSRRWLSGRGKAGAVLAGTG 94
+PP + G G A ++ + TG
Sbjct: 1044 LPPASAVATAQGPGAASSLSSDTG 1067
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 38.9 bits (89), Expect = 0.003
Identities = 40/109 (36%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 15 RPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPV 74
R GV G R R + R GGA+ P GSR+PLPAG H +V
Sbjct: 122 RVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGP----GSRQPLPAGLHG--RRKVGSA 175
Query: 75 PSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS---------LPGFCA 114
P R L G G AGA V P G RL S LPGF A
Sbjct: 176 PDRHGL-GAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIA 223
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 38.9 bits (89), Expect = 0.003
Identities = 40/109 (36%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 15 RPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPV 74
R GV G R R + R GGA+ P GSR+PLPAG H +V
Sbjct: 122 RVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGP----GSRQPLPAGLHG--RRKVGSA 175
Query: 75 PSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS---------LPGFCA 114
P R L G G AGA V P G RL S LPGF A
Sbjct: 176 PDRHGL-GAGSAGARGNKAVVGPSPPPPGRRLHSGSESRLGARLPGFIA 223
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/130 (36%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
Query: 17 AGVSGTRSIRAPAFSPEPA-----GSRDGGAQGPVSSGRIQ------GGSRRPLPAGPHP 65
+G S +R AP PEP GS G P SG Q GS LP P P
Sbjct: 86 SGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
Query: 66 GLSAEVPPVPSRRWLSGR-GKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRRLSS 124
L + P R GR G+ A AG+ A P R CS PG ATPH R +
Sbjct: 146 -LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP----RTCSSPG--RATPH--RPAG 196
Query: 125 LPLHAPAGQG 134
P H P G G
Sbjct: 197 QPSH-PGGAG 205
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/130 (36%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
Query: 17 AGVSGTRSIRAPAFSPEPA-----GSRDGGAQGPVSSGRIQ------GGSRRPLPAGPHP 65
+G S +R AP PEP GS G P SG Q GS LP P P
Sbjct: 86 SGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
Query: 66 GLSAEVPPVPSRRWLSGR-GKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRRLSS 124
L + P R GR G+ A AG+ A P R CS PG ATPH R +
Sbjct: 146 -LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP----RTCSSPG--RATPH--RPAG 196
Query: 125 LPLHAPAGQG 134
P H P G G
Sbjct: 197 QPSH-PGGAG 205
>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
sapiens]
Length = 3014
Score = 37.7 bits (86), Expect = 0.007
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 6 PEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHP 65
P V G T T ++ A P D G G ++ R G+ RPLP
Sbjct: 33 PRVPGGTRAFALRPGCTYAVGAACTPRAPRELLDVGRDGRLAGRRRVSGAGRPLPLQVR- 91
Query: 66 GLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS-----LPGFCAATPH 118
L A P LS R +A L G G A L G+RLC +PG CAA H
Sbjct: 92 -LVARSAPTA----LSRRLRARTHLPGCGARARLCGTGARLCGALCFPVPGGCAAAQH 144
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 11 PTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPA--GPHPGLS 68
P RR S T RAPA P GSR G A GP +G GG+ P+P+ G P
Sbjct: 769 PAGRRSPTSSPTPQRRAPAVPPARPGSR-GPAPGPPPAGSALGGA-PPVPSRPGASPDPF 826
Query: 69 AEVPPVPSR 77
P VPSR
Sbjct: 827 GPPPQVPSR 835
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 11 PTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPA--GPHPGLS 68
P RR S T RAPA P GSR G A GP +G GG+ P+P+ G P
Sbjct: 769 PAGRRSPTSSPTPQRRAPAVPPARPGSR-GPAPGPPPAGSALGGA-PPVPSRPGASPDPF 826
Query: 69 AEVPPVPSR 77
P VPSR
Sbjct: 827 GPPPQVPSR 835
>gi|7662494 Kruppel-like factor 15 [Homo sapiens]
Length = 416
Score = 37.0 bits (84), Expect = 0.012
Identities = 50/168 (29%), Positives = 65/168 (38%), Gaps = 44/168 (26%)
Query: 31 SPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVL 90
SP P G+ GGAQGP GG P P GP P L ++ PVP ++ SG G A
Sbjct: 193 SPPPGGASAGGAQGP-------GGG--PTPDGPIPVL-LQIQPVPVKQ-ESGTGPASPGQ 241
Query: 91 AGTGV-------------YALLPE-AGSRLCSLPGFCAATPHPRRLSSLPLHA-PAGQGE 135
A V +AL+P+ S +LP R++ +P+ A P G G
Sbjct: 242 APENVKVAQLLVNIQGQTFALVPQVVPSSNLNLPSKFV------RIAPVPIAAKPVGSGP 295
Query: 136 LQASDFISLWKARDQAKNFGRAFQHLRSKEVANLLFSHCCVLEGCGAM 183
L L G+ F A L+ H C GC M
Sbjct: 296 LGPGPAGLL---------MGQKFP---KNPAAELIKMHKCTFPGCSKM 331
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 37.0 bits (84), Expect = 0.012
Identities = 52/171 (30%), Positives = 69/171 (40%), Gaps = 20/171 (11%)
Query: 9 GGPTYRRPA----GVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPL-PAGP 63
G PT RRP G++G RS A S E S DGGA G +S G G +PL P P
Sbjct: 66 GPPTSRRPRAPRPGLAGARSPGAWT-SSESLASDDGGAPGILSQGAPSGLLMQPLSPRAP 124
Query: 64 --HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRR 121
+P + + SRR + A G GV P R P A+P P +
Sbjct: 125 VRNPRVEHTLRET-SRRLELAQTHERAPSPGRGV-PRSPRGSGRSSPAPNLAPASPGPAQ 182
Query: 122 LSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRS--KEVANLL 170
L + E A+ L + DQA+ + +R+ E A LL
Sbjct: 183 LQLV--------REQMAAALRRLRELEDQARTLPELQEQVRALRAEKARLL 225
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPA---FSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGP 63
E G P +R PAG +G + PA +P PAG R G A P G G R +P P
Sbjct: 484 ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPR-GAAGEPGRDGVPGGPGMRGMPGSP 542
Query: 64 HPGLSAEVPPVPSRRWLSGR 83
S P P + SGR
Sbjct: 543 GGPGSDGKPGPPGSQGESGR 562
Score = 31.2 bits (69), Expect = 0.64
Identities = 30/90 (33%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAG-SRDGGAQGPVSSGRIQG--GSRRP----- 58
E GGP P G G P P P G D G GP +QG G+ P
Sbjct: 595 ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG 654
Query: 59 LPAGPHPGLSAEVPPVPSRRWLSGRGKAGA 88
P P P A P P G+G AGA
Sbjct: 655 KPGEPGPKGDAGAPGAP-----GGKGDAGA 679
Score = 30.8 bits (68), Expect = 0.84
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 9 GGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDG-GAQGPVSSGRIQGGSRRPLPAGPHPGL 67
GG PAG+ G + P PAG+ G +G G P P G
Sbjct: 393 GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG-- 450
Query: 68 SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGF 112
A +P VP + G+ + G+ E G+ PGF
Sbjct: 451 EAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA-----PGF 490
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGP 45
+ G P R P G++G +R A P P G + GA GP
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK--GAAGP 712
Score = 28.5 bits (62), Expect = 4.2
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 9 GGPTYRRPAGVSGTRSIRAPAF---SPEPAGSRDG-GAQGP 45
G P PAG SG R PA +P PAGSR G QGP
Sbjct: 1050 GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Score = 27.7 bits (60), Expect = 7.1
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 16 PAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQG-----GSRRPLPAGPHPGL-SA 69
PAG G+ AP EP GAQGP I G G P PGL A
Sbjct: 355 PAGSPGSNG--APGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGA 412
Query: 70 EVPPVPS 76
PP P+
Sbjct: 413 RGPPGPA 419
Score = 27.7 bits (60), Expect = 7.1
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 5 RPEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPH 64
R E G P PAG G AP + EP G + GA G +G P AGP
Sbjct: 800 RGETGPPG---PAGFPG-----APGQNGEPGGKGERGAPGE------KGEGGPPGVAGPP 845
Query: 65 PGLSAEVPPVP 75
G PP P
Sbjct: 846 GGSGPAGPPGP 856
Score = 27.7 bits (60), Expect = 7.1
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 9 GGPTYRRPAGVSGTRSIRAPAFSPEPAGS-RDGGAQGPVSSGRIQGGSRRPLPAGPH--P 65
G P AG++G R + P P P GS G +G G S P GP P
Sbjct: 942 GAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLP 1001
Query: 66 GLS 68
GL+
Sbjct: 1002 GLA 1004
Score = 27.3 bits (59), Expect = 9.3
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 21/94 (22%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAG----SRDGGA------QGPVSSGRIQGGSR 56
E GGP G G R P P PAG +GGA GP S +G +
Sbjct: 745 EPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG 804
Query: 57 RPLPAG--PHPGLSAEVPPVPSRRWLSGRGKAGA 88
P PAG PG + E G+G+ GA
Sbjct: 805 PPGPAGFPGAPGQNGEP---------GGKGERGA 829
Score = 27.3 bits (59), Expect = 9.3
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 16 PAGVSGTRSIRAPAFSPEPAGSRD--GGAQGPVSSG--------RIQGGSRRPLPAGPHP 65
P GV+G PA P P G + G GP ++G G + P P GP
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Query: 66 GLSAEVPPVPS 76
+ PP P+
Sbjct: 898 SPGKDGPPGPA 908
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.2 bits (82), Expect = 0.020
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 9 GGPTYRRPAGVSGTRSIRA---PAFSPEPAGSR----DGGAQGPVSSGRIQGGSRRPLPA 61
G P R PAG +G I P P PAG + + G QGP +QG P PA
Sbjct: 1087 GSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPA 1146
Query: 62 GP 63
GP
Sbjct: 1147 GP 1148
Score = 31.6 bits (70), Expect = 0.49
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 16 PAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAE 70
P G G + P P PAGS G +GP + G RP P GP PG + E
Sbjct: 1067 PVGALGLKGNEGPPGPPGPAGS--PGERGPAGAAGPIGIPGRPGPQGP-PGPAGE 1118
Score = 28.9 bits (63), Expect = 3.2
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 6 PEVGGPTYRR-PAGVSGTRSIRAPAFSPEPAGSRDG----GAQGPVSSGRIQGGSRRPLP 60
P GP +R P G G R R P P G+ G G G QG + P P
Sbjct: 903 PGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGP 962
Query: 61 AGPHPGLSAE--VPPVPSRRWLSG-RGKAG 87
GP PG + +P P +R +G +GK G
Sbjct: 963 KGP-PGPPGKDGLPGHPGQRGETGFQGKTG 991
Score = 28.1 bits (61), Expect = 5.5
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAG-----SRDG-----GAQGPVSSGRIQGGSR 56
E G P + P G +G ++ P P PAG DG G G S +G
Sbjct: 1118 EKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQG 1177
Query: 57 RPLPAGP 63
P P GP
Sbjct: 1178 PPGPTGP 1184
Score = 27.7 bits (60), Expect = 7.1
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 17 AGVSGTRSIRAPAFSPE---PAGSR----DGGAQGPVSSGRIQGGSRRPLPAGP 63
AG GT+ PA P P G R D G GPV + ++G P P GP
Sbjct: 1032 AGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGP 1085
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 36.2 bits (82), Expect = 0.020
Identities = 48/150 (32%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 2 GWR-RPEVGGPTYRRPAGVSGTRSIRAPA-FSPEPAGS----RDG-GAQGPVSSGRIQGG 54
GW RP P P V G + +P F P P R G GA GP S GR +
Sbjct: 35 GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRR 94
Query: 55 SRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVY--ALLPEAGSRLCSLPGF 112
R PAGP +R GR G+ +G A PEA P +
Sbjct: 95 GSRDPPAGP-----------VARARARGRSAPGSAQPASGAAGPAAAPEAAP-----PAW 138
Query: 113 CAATPHPRR----LSSLPLHAPAGQGELQA 138
AT P R L S PLH P G ++A
Sbjct: 139 DPATLPPSRKRNSLGSSPLH-PVRLGRVRA 167
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 36.2 bits (82), Expect = 0.020
Identities = 48/150 (32%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 2 GWR-RPEVGGPTYRRPAGVSGTRSIRAPA-FSPEPAGS----RDG-GAQGPVSSGRIQGG 54
GW RP P P V G + +P F P P R G GA GP S GR +
Sbjct: 35 GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRR 94
Query: 55 SRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVY--ALLPEAGSRLCSLPGF 112
R PAGP +R GR G+ +G A PEA P +
Sbjct: 95 GSRDPPAGP-----------VARARARGRSAPGSAQPASGAAGPAAAPEAAP-----PAW 138
Query: 113 CAATPHPRR----LSSLPLHAPAGQGELQA 138
AT P R L S PLH P G ++A
Sbjct: 139 DPATLPPSRKRNSLGSSPLH-PVRLGRVRA 167
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 36.2 bits (82), Expect = 0.020
Identities = 48/150 (32%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 2 GWR-RPEVGGPTYRRPAGVSGTRSIRAPA-FSPEPAGS----RDG-GAQGPVSSGRIQGG 54
GW RP P P V G + +P F P P R G GA GP S GR +
Sbjct: 35 GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRR 94
Query: 55 SRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVY--ALLPEAGSRLCSLPGF 112
R PAGP +R GR G+ +G A PEA P +
Sbjct: 95 GSRDPPAGP-----------VARARARGRSAPGSAQPASGAAGPAAAPEAAP-----PAW 138
Query: 113 CAATPHPRR----LSSLPLHAPAGQGELQA 138
AT P R L S PLH P G ++A
Sbjct: 139 DPATLPPSRKRNSLGSSPLH-PVRLGRVRA 167
>gi|239755705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 35.8 bits (81), Expect = 0.026
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 53 GGSRRPLPAGPHPGLSAEVPPVPSRR----WLSGRGKAGAVLAGTG 94
G S +P AGP P S+ PP P RR WL + A LAG G
Sbjct: 72 GKSSQPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYG 117
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 35.4 bits (80), Expect = 0.034
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 65 PGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFC-AATPHPRRLS 123
PGL A +PP + G G L G A A + + PG AA+PHP +
Sbjct: 191 PGLPALLPPCATGAL--GSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVG 248
Query: 124 SLPLHAPAGQGELQA 138
P PAG G L A
Sbjct: 249 GAPGPGPAGPGGLHA 263
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/146 (24%), Positives = 49/146 (33%), Gaps = 23/146 (15%)
Query: 14 RRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRR----------PLPAGP 63
R+P + G ++R + E R G A P + + R P P+
Sbjct: 330 RKPTVLKG--AVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRA 387
Query: 64 HPGLSAEVPPVPSRRW-----------LSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGF 112
PG A P R L G G+ V G +AL GSR G
Sbjct: 388 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGV 447
Query: 113 CAATPHPRRLSSLPLHAPAGQGELQA 138
PH R LSS +P ++A
Sbjct: 448 LRGVPHFRPLSSPAPQSPPRSPSVRA 473
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/146 (24%), Positives = 49/146 (33%), Gaps = 23/146 (15%)
Query: 14 RRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRR----------PLPAGP 63
R+P + G ++R + E R G A P + + R P P+
Sbjct: 330 RKPTVLKG--AVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRA 387
Query: 64 HPGLSAEVPPVPSRRW-----------LSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGF 112
PG A P R L G G+ V G +AL GSR G
Sbjct: 388 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGV 447
Query: 113 CAATPHPRRLSSLPLHAPAGQGELQA 138
PH R LSS +P ++A
Sbjct: 448 LRGVPHFRPLSSPAPQSPPRSPSVRA 473
>gi|149363674 hypothetical protein LOC25758 [Homo sapiens]
Length = 1855
Score = 35.0 bits (79), Expect = 0.045
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 21/142 (14%)
Query: 4 RRPEVGGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGA-----QGPVSSGRIQ------ 52
R V + RR G+++ A + PEPA D + +GPVS ++
Sbjct: 1651 RTGPVAVASLRRSTSDIGSKTRMAESTGPEPAQLHDSASFTQMSRGPVSVTQLDQSALNY 1710
Query: 53 GGSRRP----LPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS 108
G+ P +PA PG + P P + R +A AG LP +
Sbjct: 1711 SGNTVPAVFAIPAANRPGFTGYFIPTPPSSY---RNQAWMSYAGENE---LPSQWADSVP 1764
Query: 109 LPGFCAATPHPRRLSSLPLHAP 130
LPG+ A P R S P P
Sbjct: 1765 LPGYIEAYPRSRYPQSSPSRLP 1786
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 35.0 bits (79), Expect = 0.045
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 16 PAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSA---EVP 72
P + T + R P+ +P PA S G++GP G + P GP P +A VP
Sbjct: 888 PGVEARTPADRGPSPAPAPAASPQPGSRGPRDG---LGPEPQEPPPGPPPSPAAAPEAVP 944
Query: 73 PVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSL 109
P P+ S + G G A LP R C L
Sbjct: 945 PPPAPPSYSDK---GVQTPSKGTPAPLPNGNHRYCRL 978
Score = 33.9 bits (76), Expect = 0.099
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 11 PTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLS 68
P RP SG+ APA SP PA A GP+ + RRPLP P P L+
Sbjct: 766 PESPRPGSGSGSGPGLAPARSPGPA------ADGPID---LSKKPRRPLPGAPAPALA 814
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/145 (24%), Positives = 44/145 (30%), Gaps = 14/145 (9%)
Query: 6 PEVGGPTYRRPAGVSGTRSIRAPAFSP-----------EPAGSRDGGAQGPVSSGRIQGG 54
P GG P G R P P EPAG+ A +
Sbjct: 97 PSAGGAA---PCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLPGSDS 153
Query: 55 SRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCA 114
R P G G + PPVP+ + +A A T + L LPG
Sbjct: 154 RRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNNLAVLPGELG 213
Query: 115 ATPHPRRLSSLPLHAPAGQGELQAS 139
A PH P A Q + AS
Sbjct: 214 ALPHSATAEEKPARALPAQDDRGAS 238
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 34.7 bits (78), Expect = 0.058
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 53 GGSRRPLPAGPHPGLSAEVPPVPSRR----WLSGRGKAGAVLAGTG 94
G S P AGP P S+ PP P RR WL + A LAG G
Sbjct: 72 GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYG 117
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 34.7 bits (78), Expect = 0.058
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 53 GGSRRPLPAGPHPGLSAEVPPVPSRR----WLSGRGKAGAVLAGTG 94
G S P AGP P S+ PP P RR WL + A LAG G
Sbjct: 72 GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYG 117
>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
Length = 1123
Score = 34.7 bits (78), Expect = 0.058
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 19 VSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVP---PVP 75
+S T + A SP PA A+ + R G RP P P L+ + PV
Sbjct: 670 LSNTTTEPASTMSPPPAKKLALSAKKASTLWRATGNDLRPPPPSPSSDLTHPMKTSHPVV 729
Query: 76 SRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRRLSSLPLHAPAGQGE 135
+ W R +A + P++ SRL P F +PHP LSS P P G E
Sbjct: 730 ASTWPVHRARA---------VSPAPQSSSRL--QPPF---SPHPTLLSSTP--KPPGTSE 773
Query: 136 LQASDFIS 143
++ IS
Sbjct: 774 PRSCSSIS 781
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 34.7 bits (78), Expect = 0.058
Identities = 40/128 (31%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 9 GGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLS 68
G P PAG+ G I+ +P P G D G +GP + G P P PG S
Sbjct: 313 GPPGPEGPAGLIGPPGIQG---NPGPVG--DPGERGPPGRAGLPGSDGAPGP----PGTS 363
Query: 69 AEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSRLCSLPGFCAATPHPRRLSSLP 126
+P R+ SG G G V+A A+L +A L PG T P P
Sbjct: 364 LMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPG-----P 414
Query: 127 LHAPAGQG 134
L P G
Sbjct: 415 LGQPGSPG 422
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAG----SRDGGAQGPVSSGRIQGGSRRPLPAG 62
E G P + P G +G ++ P P PAG + + G +G V +G G
Sbjct: 960 EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 1019
Query: 63 PHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRRL 122
P PG + PV G+ GA G + + G+R GF P P L
Sbjct: 1020 P-PGPPGPIGPVGQPGAAGADGEPGA-RGPQGHFGAKGDEGTR-----GF-NGPPGPIGL 1071
Query: 123 SSLPLHAPAGQ 133
LP P+G+
Sbjct: 1072 QGLP--GPSGE 1080
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 34.7 bits (78), Expect = 0.058
Identities = 40/128 (31%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 9 GGPTYRRPAGVSGTRSIRAPAFSPEPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLS 68
G P PAG+ G I+ +P P G D G +GP + G P P PG S
Sbjct: 292 GPPGPEGPAGLIGPPGIQG---NPGPVG--DPGERGPPGRAGLPGSDGAPGP----PGTS 342
Query: 69 AEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSRLCSLPGFCAATPHPRRLSSLP 126
+P R+ SG G G V+A A+L +A L PG T P P
Sbjct: 343 LMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPG-----P 393
Query: 127 LHAPAGQG 134
L P G
Sbjct: 394 LGQPGSPG 401
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 7 EVGGPTYRRPAGVSGTRSIRAPAFSPEPAG----SRDGGAQGPVSSGRIQGGSRRPLPAG 62
E G P + P G +G ++ P P PAG + + G +G V +G G
Sbjct: 939 EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 998
Query: 63 PHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATPHPRRL 122
P PG + PV G+ GA G + + G+R GF P P L
Sbjct: 999 P-PGPPGPIGPVGQPGAAGADGEPGA-RGPQGHFGAKGDEGTR-----GF-NGPPGPIGL 1050
Query: 123 SSLPLHAPAGQ 133
LP P+G+
Sbjct: 1051 QGLP--GPSGE 1059
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,650,557
Number of Sequences: 37866
Number of extensions: 671718
Number of successful extensions: 3849
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 3415
Number of HSP's gapped (non-prelim): 823
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.