Guide to the Human Genome
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Name: LOC642891 Sequence: fasta or formatted (220aa) NCBI GI: 239741942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {220aa} PREDICTED: hypothetical protein
alt prot {205aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         25           2
 C cysteine            3.6          8           2
 D aspartate           1.8          4           1
 E glutamate           3.2          7           1
 F phenylalanine       2.3          5           1
 G glycine            13.6         30           3
 H histidine           2.3          5           1
 I isoleucine          2.7          6           1
 K lysine              2.3          5           1
 L leucine            11.8         26           2
 M methionine          0.9          2           1
 N asparagine          2.7          6           2
 P proline            10.5         23           2
 Q glutamine           2.7          6           1
 R arginine           10.0         22           2
 S serine              9.1         20           2
 T threonine           2.7          6           1
 V valine              4.1          9           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC642891             1.000   PREDICTED: hypothetical protein 
LOC642891             0.863   PREDICTED: hypothetical protein 
FLJ31945              0.039   PREDICTED: hypothetical protein 
CELSR1                0.037   cadherin EGF LAG seven-pass G-type receptor 1 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
LOC100291634          0.032   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.032   PREDICTED: hypothetical protein XP_002346952 
LOC100287558          0.032   PREDICTED: hypothetical protein XP_002343325 
LOC100287232          0.032   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.032   PREDICTED: hypothetical protein 
KANK3                 0.032   ankyrin repeat domain 47 
LOC147670             0.030   PREDICTED: hypothetical protein LOC147670 
LOC100293375          0.030   PREDICTED: hypothetical protein 
LOC147670             0.030   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.030   PREDICTED: hypothetical protein LOC147670 
ANKRD56               0.030   ankyrin repeat domain 56 
GATA4                 0.028   GATA binding protein 4 
COL2A1                0.028   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.028   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 1 preproprotein ...
LOC400236             0.028   PREDICTED: hypothetical protein 
LOC100287514          0.028   PREDICTED: hypothetical protein XP_002343754 
LOC400236             0.028   PREDICTED: hypothetical protein 
LOC100289242          0.028   PREDICTED: hypothetical protein XP_002342243 
PPP1R10               0.026   protein phosphatase 1, regulatory subunit 10 
GATA6                 0.026   GATA binding protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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