Guide to the Human Genome
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Name: LOC100287602 Sequence: fasta or formatted (258aa) NCBI GI: 239746814
Description:

PREDICTED: hypothetical protein XP_002343855

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         35           4
 C cysteine            4.3         11           2
 D aspartate           0.8          2           1
 E glutamate           3.5          9           3
 F phenylalanine       0.8          2           1
 G glycine            10.9         28           3
 H histidine           2.3          6           1
 I isoleucine          0.4          1           1
 K lysine              1.6          4           1
 L leucine             6.6         17           5
 M methionine          2.7          7           1
 N asparagine          0.0          0           0
 P proline            15.1         39           3
 Q glutamine           3.5          9           2
 R arginine            9.3         24           2
 S serine             15.1         39           4
 T threonine           3.1          8           1
 V valine              5.4         14           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343855 
LOC100291061          1.000   PREDICTED: hypothetical protein XP_002348193 
NACA                  0.057   nascent polypeptide-associated complex alpha subuni...
LOC100291634          0.055   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.055   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.055   PREDICTED: hypothetical protein 
CPSF6                 0.053   cleavage and polyadenylation specific factor 6, 68 ...
COL1A1                0.049   alpha 1 type I collagen preproprotein 
LOC100291096          0.049   PREDICTED: hypothetical protein XP_002346952 
TAF4                  0.047   TBP-associated factor 4 
OGFR                  0.045   opioid growth factor receptor 
AGAP2                 0.045   centaurin, gamma 1 isoform PIKE-L 
COL18A1               0.045   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.045   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.045   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
BBC3                  0.045   BCL2 binding component 3 isoform 1 
HCN2                  0.045   hyperpolarization activated cyclic nucleotide-gated...
LOC100134240          0.045   PREDICTED: hypothetical protein 
OTUD7A                0.045   OTU domain containing 7A 
SAMD1                 0.043   sterile alpha motif domain containing 1 
PRB2                  0.043   proline-rich protein BstNI subfamily 2 
LOC100133638          0.043   PREDICTED: hypothetical protein 
LOC100291076          0.043   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.043   PREDICTED: hypothetical protein XP_002343630 
LOC339742             0.043   PREDICTED: hypothetical protein 
SNRPN                 0.043   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.043   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.043   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.043   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.043   small nuclear ribonucleoprotein polypeptide N 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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