Guide to the Human Genome
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Name: LOC100292482 Sequence: fasta or formatted (306aa) NCBI GI: 239755705
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         27           3
 C cysteine            3.3         10           1
 D aspartate           1.0          3           1
 E glutamate           4.9         15           3
 F phenylalanine       4.6         14           1
 G glycine            10.5         32           1
 H histidine           1.3          4           1
 I isoleucine          1.3          4           1
 K lysine              1.6          5           1
 L leucine            11.4         35           2
 M methionine          1.0          3           1
 N asparagine          1.6          5           1
 P proline            13.1         40           3
 Q glutamine           3.9         12           1
 R arginine           12.7         39           4
 S serine              8.5         26           2
 T threonine           3.9         12           1
 V valine              3.9         12           1
 W tryptophan          2.0          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287907          0.776   PREDICTED: hypothetical protein 
LOC100287907          0.776   PREDICTED: hypothetical protein XP_002343168 
TP53INP2              0.037   tumor protein p53 inducible nuclear protein 2 
GLTSCR1               0.037   glioma tumor suppressor candidate region gene 1 [Ho...
ADAM15                0.036   a disintegrin and metalloproteinase domain 15 isofor...
SAMD1                 0.036   sterile alpha motif domain containing 1 
LMTK3                 0.036   lemur tyrosine kinase 3 
HCN2                  0.036   hyperpolarization activated cyclic nucleotide-gated...
LOC643355             0.034   PREDICTED: hypothetical protein 
LOC643355             0.034   PREDICTED: hypothetical protein 
SYN1                  0.033   synapsin I isoform Ia 
SYN1                  0.033   synapsin I isoform Ib 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100130360          0.031   PREDICTED: hypothetical protein 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
C2orf55               0.031   hypothetical protein LOC343990 
SOX3                  0.031   SRY (sex determining region Y)-box 3 
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent re...
ADAM15                0.029   a disintegrin and metalloproteinase domain 15 isofor...
PRAM1                 0.029   PML-RARA regulated adaptor molecule 1 
PCLO                  0.029   piccolo isoform 2 
PCLO                  0.029   piccolo isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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