Guide to the Human Genome
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Name: LOC100287907 Sequence: fasta or formatted (363aa) NCBI GI: 239744524
Description:

PREDICTED: hypothetical protein XP_002343168

Not currently referenced in the text

Other entries for this name:
alt mRNA {363aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         32           3
 C cysteine            3.0         11           1
 D aspartate           0.8          3           1
 E glutamate           4.4         16           1
 F phenylalanine       3.6         13           1
 G glycine            11.0         40           3
 H histidine           1.9          7           1
 I isoleucine          1.1          4           1
 K lysine              2.2          8           2
 L leucine            11.3         41           2
 M methionine          0.8          3           1
 N asparagine          1.1          4           1
 P proline            12.9         47           3
 Q glutamine           5.0         18           1
 R arginine           11.6         42           4
 S serine              9.6         35           2
 T threonine           3.0         11           1
 V valine              3.9         14           1
 W tryptophan          2.2          8           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343168 
LOC100287907          1.000   PREDICTED: hypothetical protein 
LOC100292482          0.647   PREDICTED: hypothetical protein 
TP53INP2              0.030   tumor protein p53 inducible nuclear protein 2 
SAMD1                 0.030   sterile alpha motif domain containing 1 
LMTK3                 0.030   lemur tyrosine kinase 3 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
ADAM15                0.030   a disintegrin and metalloproteinase domain 15 isofor...
GLTSCR1               0.028   glioma tumor suppressor candidate region gene 1 [Ho...
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
MLL4                  0.027   myeloid/lymphoid or mixed-lineage leukemia 4 
C2orf55               0.026   hypothetical protein LOC343990 
LOC100286967          0.026   PREDICTED: hypothetical protein XP_002342247 
ZIC5                  0.026   zinc finger protein of the cerebellum 5 
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.024   SWI/SNF-related matrix-associated actin-dependent re...
PCLO                  0.024   piccolo isoform 2 
PCLO                  0.024   piccolo isoform 1 
SHANK1                0.024   SH3 and multiple ankyrin repeat domains 1 
ADAM15                0.023   a disintegrin and metalloproteinase domain 15 isofor...
MED25                 0.023   mediator complex subunit 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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