Guide to the Human Genome
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Search of human proteins with 169164783

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
         (396 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]           790   0.0  
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]           790   0.0  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     52   1e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      51   2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      49   8e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               49   1e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               49   1e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    48   2e-05
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    48   2e-05
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    48   2e-05
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    48   2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    47   2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    47   2e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       47   2e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    47   2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    47   2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    47   2e-05
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            47   3e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    47   3e-05
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    47   4e-05
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    47   4e-05
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    47   4e-05
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            47   4e-05
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            46   5e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           46   5e-05
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            46   5e-05
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           46   5e-05
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           46   5e-05
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-04

>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score =  790 bits (2039), Expect = 0.0
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
           MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP
Sbjct: 1   MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60

Query: 61  TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
           TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA
Sbjct: 61  TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120

Query: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
           GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV
Sbjct: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180

Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
           GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR
Sbjct: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240

Query: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
           EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR
Sbjct: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300

Query: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
           VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK
Sbjct: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360

Query: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
           SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV
Sbjct: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396


>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score =  790 bits (2039), Expect = 0.0
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
           MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP
Sbjct: 1   MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60

Query: 61  TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
           TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA
Sbjct: 61  TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120

Query: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
           GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV
Sbjct: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180

Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
           GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR
Sbjct: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240

Query: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
           EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR
Sbjct: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300

Query: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
           VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK
Sbjct: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360

Query: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
           SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV
Sbjct: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 68/226 (30%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALR-------PTDRT 64
           G AG R   G P  +G   A  R  PP P G+     P  P G   LR       P  RT
Sbjct: 772 GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRT 831

Query: 65  CS---------SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-GLL 114
                      +   G  G  G A P   P  Q L    G     G  G R  P + G +
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAV 891

Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG------- 167
             P   G+ G   G R  P  +G     G  G AGR          G   Q G       
Sbjct: 892 GEPGPLGIAG-PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY 950

Query: 168 ------IGAGHARGGRGAVGPAGQH--RARLGAAVLRGTAGAPARR 205
                 +GA  A G  G VGPAG+H  R   G +   G AGA   R
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996



 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 65/213 (30%), Positives = 82/213 (38%), Gaps = 43/213 (20%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPA---WAESRARPPRPRGL--EP-------RHPPGSPAL 58
           +P  AG  G+R  PG   ++GP     +   + PP P G   EP          P  P+ 
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640

Query: 59  RPTDRTCSSSSAGVGGGVG-GAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
            P +R     +AG+ GG G   +PG           RG     GR G R  P  G +  P
Sbjct: 641 LPGER----GAAGIPGGKGEKGEPGL----------RGEIGNPGRDGARGAP--GAVGAP 684

Query: 118 RVAGVDGLDRG--GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHAR 174
             AG  G DRG  G   PAG       G  G  G +         G     G  G   A+
Sbjct: 685 GPAGATG-DRGEAGAAGPAG-----PAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAK 738

Query: 175 GGRGAVGPAGQH-----RARLGAAVLRGTAGAP 202
           G RGA GP G++        +GAA   G  G P
Sbjct: 739 GERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP 771



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 58/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G  G   A G P   G    +    PP P G +    P  PA             G+ 
Sbjct: 521 APGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPA----GEVGKPGERGLH 576

Query: 74  GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVDGLDRGG 129
           G  G   P      +    E G     G +G R P     P G    P V G  G    G
Sbjct: 577 GEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVG--TAG 634

Query: 130 RLDPAGI-GQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGAVGPAG 184
              P+G+ G+    G+ GG G +         GL  ++G     GA  A G  GA GPAG
Sbjct: 635 PSGPSGLPGERGAAGIPGGKGEKGEP------GLRGEIGNPGRDGARGAPGAVGAPGPAG 688

Query: 185 Q--HRARLGAAVLRGTAG 200
               R   GAA   G AG
Sbjct: 689 ATGDRGEAGAAGPAGPAG 706



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 65/204 (31%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P   G  G    PG P  +GPA A   A PP   G E  H PG P  RP +R        
Sbjct: 108 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG-EDGH-PGKPG-RPGERGVVGPQGA 164

Query: 72  VGGGVGGAQPGSVPLGQHLALE--RGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL--DR 127
            G       PG   +  H  L+  +G+    G  G  +P   G    P   G  GL  +R
Sbjct: 165 RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKG--EPGAPGENGTPGQTGARGLPGER 222

Query: 128 G--GRLDPAG-------IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRG 178
           G  G   PAG       +G V   G +G AG       G A G   ++G     A G  G
Sbjct: 223 GRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPP--GFPG-APGPKGEIG-----AVGNAG 274

Query: 179 AVGPAGQHRARLGAAVLRGTAGAP 202
             GPAG  R  +G   L G  G P
Sbjct: 275 PAGPAGP-RGEVGLPGLSGPVGPP 297



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 62/192 (32%), Positives = 73/192 (38%), Gaps = 28/192 (14%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           AAG  G   APGLP   G       A     RGL      G P   P      S + G  
Sbjct: 311 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL-----VGEPG--PAGSKGESGNKGEP 363

Query: 74  GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD-RGGRL 131
           G  G   P   P G     E G+   +G  G   PP P GL  +P   G+ G D R G +
Sbjct: 364 GSAGPQGPPG-PSG-----EEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVM 417

Query: 132 DPAGIGQVLG-LGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARL 190
            P G     G  GV G  G   R   G+  GL+   G+      G  G +GPAG+     
Sbjct: 418 GPPGSRGASGPAGVRGPNGDAGRP--GEP-GLMGPRGL-----PGSPGNIGPAGKE---- 465

Query: 191 GAAVLRGTAGAP 202
           G   L G  G P
Sbjct: 466 GPVGLPGIDGRP 477



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 62/208 (29%), Positives = 77/208 (37%), Gaps = 30/208 (14%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAESRA-RPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
           +P   G+AG   A GL    GPA ++  +     P    P+ PPG               
Sbjct: 329 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSG--------EEGK 380

Query: 70  AGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD-RG 128
            G  G  G A P   P  +     RG     GR G   PP       P  AGV G +   
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGP--AGVRGPNGDA 438

Query: 129 GRLDPAGIGQVLGL----GVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAV-- 180
           GR    G+    GL    G +G AG++    G   L G+  + G IG   ARG  G +  
Sbjct: 439 GRPGEPGLMGPRGLPGSPGNIGPAGKE----GPVGLPGIDGRPGPIGPAGARGEPGNIGF 494

Query: 181 ----GPAGQ--HRARLGAAVLRGTAGAP 202
               GP G        G A L G  GAP
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGAP 522



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 66/213 (30%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAE----SRARPPRPRGLEPRHPPGSPA-LRPTDRTC 65
           +P A G AG    PG   +SGPA          RP  P  + PR  PGSP  + P  +  
Sbjct: 407 LPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEG 466

Query: 66  SSSSAGVGG-----GVGGA--QPGSV----PLGQHLALERGRTLGH-GRVGRRDPP-PLG 112
                G+ G     G  GA  +PG++    P G      +    GH G  G R  P P G
Sbjct: 467 PVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDG 526

Query: 113 LLVNPRVAGVDGLDRG-GRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-G 169
                   G  G+  G G   P G     GL G  G AG   +   G+  GL  + G+ G
Sbjct: 527 NNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKP--GER-GLHGEFGLPG 583

Query: 170 AGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
               RG RG  G +G      G    RG +G P
Sbjct: 584 PAGPRGERGPPGESGA-AGPTGPIGSRGPSGPP 615



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 66/225 (29%), Positives = 78/225 (34%), Gaps = 38/225 (16%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P +AG  G     G     GP      A PP P GL  R  PGS  L   D    +   G
Sbjct: 363 PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGL--RGSPGSRGLPGADG--RAGVMG 418

Query: 72  VGGGVGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGV 122
             G  G + P  V  P G     + GR    G +G R  P       P G      + G+
Sbjct: 419 PPGSRGASGPAGVRGPNG-----DAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGI 473

Query: 123 DGL-----DRGGRLDPAGIGQVLGLGVLGGAGRQ----------RRALGGQALGLLAQVG 167
           DG        G R +P  IG     G  G  G+            R   G      AQ  
Sbjct: 474 DGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGP 533

Query: 168 IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
            G    +GG+G  GP G      G   L G +G PA  VG   ER
Sbjct: 534 PGPQGVQGGKGEQGPPGPP----GFQGLPGPSG-PAGEVGKPGER 573



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 66/231 (28%), Positives = 80/231 (34%), Gaps = 39/231 (16%)

Query: 9   VTVPRAAGSAGQRRAPGLPRSSGPA------WAESRARPPRPRGLE-PRHPPGSPALR-- 59
           V  P  AG+ G R   G    +GPA             P  P G   P    G P  +  
Sbjct: 681 VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740

Query: 60  -----PTDRTCSSSSAGVGGGVGGAQPGSVP---LGQHLALERGRTLGHGRVGRRDPP-P 110
                P          G  G  G A P   P     +      G T   G  GR  PP P
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800

Query: 111 LGLL---VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAG-RQRRALGGQA------- 159
            G+      P  AG +GL RG R D   +G+   +G +G  G    +   G+A       
Sbjct: 801 SGISGPPGPPGPAGKEGL-RGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG 859

Query: 160 ----LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
                GLL   GI G   +RG RG  G AG     +G     G AG P  R
Sbjct: 860 TPGPQGLLGAPGILGLPGSRGERGLPGVAG----AVGEPGPLGIAGPPGAR 906



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 82/298 (27%), Positives = 95/298 (31%), Gaps = 57/298 (19%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G+R  PG P   G    +    PP P G     PPG P              G+GG 
Sbjct: 39  GPRGERGPPGPPGRDG---EDGPTGPPGPPG-----PPGPP--------------GLGGN 76

Query: 76  VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD--RGGRLDP 133
                 G           +G  LG G +G   P        P  AG  G    +G   +P
Sbjct: 77  FAAQYDG-----------KGVGLGPGPMGLMGPRG-----PPGAAGAPGPQGFQGPAGEP 120

Query: 134 AGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGAVGPAGQH--R 187
              GQ    G  G AG   +A      G   + G    +G   ARG  G  G  G    R
Sbjct: 121 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR 180

Query: 188 ARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGRVI 247
              G   L+G  GAP    GV  E  A        Q     R +  +RGRV         
Sbjct: 181 GHNGLDGLKGQPGAP----GVKGEPGAPGENGTPGQT--GARGLPGERGRVGAPGPAGAR 234

Query: 248 GRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARARVEAGL 305
           G    V PV      PA   G A   G      P G   A     P   A  R E GL
Sbjct: 235 GSDGSVGPV-----GPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGL 287



 Score = 35.8 bits (81), Expect = 0.069
 Identities = 61/179 (34%), Positives = 69/179 (38%), Gaps = 30/179 (16%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
            P   G  G +   G P + GP  A   A  P P G  P  P G    R    T  S   G
Sbjct: 936  PGRDGQPGHKGERGYPGNIGPVGA---AGAPGPHG--PVGPAGKHGNR--GETGPSGPVG 988

Query: 72   VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL----GLLVNPRVAGVDGLDR 127
              G VG   P S P G      RG     G  G R  P L    GL   P +AG  G D+
Sbjct: 989  PAGAVGPRGP-SGPQG-----IRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHG-DQ 1041

Query: 128  G--GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
            G  G + PAG     G    G AG+  R   G   G +   GI     RG +G  GPAG
Sbjct: 1042 GAPGSVGPAGPRGPAGPS--GPAGKDGRT--GHP-GTVGPAGI-----RGPQGHQGPAG 1090


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 64/217 (29%), Positives = 77/217 (35%), Gaps = 21/217 (9%)

Query: 16  GSAGQRRAPGLPRSSGPAWA---ESRARPPRPRGL-----EPRHPPGSPALRPTDRTCSS 67
           G  G+  APGLP  +GP  +        PP P G      +   P G             
Sbjct: 777 GDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVG----RRDPPPLGLLVNPRVAGVD 123
              GV G  GG+ P   P  Q +  ERG   G G  G    R  P P G   NP   G  
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896

Query: 124 GL-DRGGRLDPAGIGQVLG----LGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGR 177
           G   + G   PAG     G     G  G AG+        A G     G +G     G R
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956

Query: 178 GAVGPAGQ--HRARLGAAVLRGTAGAPARRVGVVAER 212
           G  GP G    R   G   ++G +G P    G+  ER
Sbjct: 957 GLAGPPGMPGPRGSPGPQGVKGESGKPGAN-GLSGER 992



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 65/208 (31%), Positives = 76/208 (36%), Gaps = 21/208 (10%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPTDRTCSSSS 69
           +P + G  G    PG P S G +    R  PP P G  PR  PG      P     +   
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGES---GRPGPPGPSG--PRGQPGVMGFPGPKGNDGAPGK 592

Query: 70  AGVGGGVGGAQPGSVPLGQHLAL----ERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDG 124
            G  GG GG  P   P G++         G T   G  G   PP P GL   P   G  G
Sbjct: 593 NGERGGPGGPGPQGPP-GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651

Query: 125 LDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQALGLLAQVGIGAGHARGGRGAV 180
            + G   +P   G     G  GG G       R   G A     + G G     GG+GA 
Sbjct: 652 -ENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAA 710

Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGV 208
           GP G      GAA   G  G P  R G+
Sbjct: 711 GPPGPP----GAAGTPGLQGMPGERGGL 734



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 70/242 (28%), Positives = 88/242 (36%), Gaps = 45/242 (18%)

Query: 12   PRAAGSAGQRRAPGLPRSSG------PAWAESRARPPRPRGLE----------------- 48
            P AAG  G R  PG P S+G      P+ +  +  PP P G                   
Sbjct: 869  PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ 928

Query: 49   --------PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGH 100
                     + PPG+P   P      + + G+ G  G   P   P  Q +  E G+   +
Sbjct: 929  PGEKGSPGAQGPPGAPG--PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGAN 986

Query: 101  GRVGRRDPP-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
            G  G R PP P GL   P +AG  G + G   +P   G     G  GG G +       A
Sbjct: 987  GLSGERGPPGPQGL---PGLAGTAG-EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042

Query: 160  LGLLAQVG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAG--APARRVGVVAERA 213
             G     G    +G     G RG  GPAG   A  G A  RG  G   P    G   ER 
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP-GPAGSRGAPGPQGPRGDKGETGERG 1101

Query: 214  AS 215
            A+
Sbjct: 1102 AA 1103



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 58/191 (30%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 15  AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
           AGS G   APG     GP        PP P G+    P G   + P     +    G  G
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGIN-GSPGGKGEMGPAGIPGAPGLMGARG 414

Query: 75  GVGGAQPGSVPLGQHLALERGRTLGHGRVG-RRDPPPLGLLVNPRVAGVDGLDRGGRLDP 133
             G A     P  +  A E G+    G  G R +    G+   P   G DG D G   +P
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD-GSPGEP 473

Query: 134 AGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAA 193
              G       L GA  +R A G +          G     G  G  GPAG+ R   G A
Sbjct: 474 GANG-------LPGAAGERGAPGFR----------GPAGPNGIPGEKGPAGE-RGAPGPA 515

Query: 194 VLRGTAGAPAR 204
             RG AG P R
Sbjct: 516 GPRGAAGEPGR 526



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 67/218 (30%), Positives = 76/218 (34%), Gaps = 42/218 (19%)

Query: 16  GSAGQRRAPG---------LPRSSGPAWAESRARPPRPRGL--EPRHP--PGSPALRPTD 62
           G+AG+R APG         +P   GPA       P  PRG   EP     PG P +R   
Sbjct: 480 GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR--- 536

Query: 63  RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGV 122
                   G+ G  GG      P       E GR    G  G R  P  G++  P   G 
Sbjct: 537 --------GMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP--GVMGFPGPKGN 586

Query: 123 DGL--DRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--------ALGLLAQVGI 168
           DG     G R  P G G     G  G  G Q        GG           GL    G 
Sbjct: 587 DGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT 646

Query: 169 GAGHARGGR-GAVGPAGQHRARLGAAVLRGTAGAPARR 205
           G      G+ G  GP G   A  GA   +G AGAP  R
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAP-GAPGGKGDAGAPGER 683



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 56/203 (27%), Positives = 73/203 (35%), Gaps = 25/203 (12%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALR--PTDRTCSSSS 69
           P   G++G   +PG P   GP     +A P  P G      P  PA +   + R      
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGE 241

Query: 70  AGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGG 129
            G+ G  G   P  +P    +   RG    +G  G    P  GL     + G +G    G
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP--GLKGENGLPGENGAP--G 297

Query: 130 RLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGRGAVGP 182
            + P G     G   L GA   R   G  A G   Q G        G   + G +G VGP
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDG--ARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355

Query: 183 AGQHRARLGAAVLRGTAGAPARR 205
           AG            G+ GAP +R
Sbjct: 356 AGS----------PGSNGAPGQR 368



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G+    G P  +GP   +    PP P+GL+     G P          +   G  G 
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP-------PGENGKPGEPGP 661

Query: 76  VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV---AGVDGLDRG-GRL 131
            G A     P G+  A         G  G R PP  GL   P +   AG  G + G G  
Sbjct: 662 KGDAGAPGAPGGKGDA---------GAPGERGPP--GLAGAPGLRGGAGPPGPEGGKGAA 710

Query: 132 DPAGIGQVLGLGVLGGAGRQRRALG--------GQALGLLAQVGIGAGHARGGRGAVGPA 183
            P G     G   L G   +R  LG        G+  G  A    G    RG  G +GP 
Sbjct: 711 GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770

Query: 184 GQHRARLGAAVLRGTAGAP 202
           G      G    +G  GAP
Sbjct: 771 GP----AGQPGDKGEGGAP 785



 Score = 37.4 bits (85), Expect = 0.024
 Identities = 60/214 (28%), Positives = 71/214 (33%), Gaps = 24/214 (11%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGV 72
            A G AG    PG   S GP   +  +  P   GL   R PPG   L     T        
Sbjct: 955  ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014

Query: 73   GGGVGGAQPG--SVPLGQHLALERGRTLGHGRVGRRDPP----------------PLGLL 114
              G  G  PG    P G+    E G     G  G   PP                P G  
Sbjct: 1015 NPGSDGL-PGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA 1073

Query: 115  VNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAG 171
              P  AG  G    +G R D    G+    G+ G  G         + G   Q G IG+ 
Sbjct: 1074 GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP 1133

Query: 172  HARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
               G RG VGP+G    + G +   G  G P  R
Sbjct: 1134 GPAGPRGPVGPSGP-PGKDGTSGHPGPIGPPGPR 1166



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 40/127 (31%), Positives = 49/127 (38%), Gaps = 24/127 (18%)

Query: 14   AAGSAGQRRAPG---LPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
            AAG  G R  PG    P S GPA  +     P P G  PR P G     P+       ++
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG--PRGPVG-----PSGPPGKDGTS 1154

Query: 71   GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP--------LGLLVNPRVAGV 122
            G  G +G   PG  P G     ERG     G  G+  PP          G +    +AG+
Sbjct: 1155 GHPGPIG--PPG--PRGNR--GERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGI 1208

Query: 123  DGLDRGG 129
             G   GG
Sbjct: 1209 GGEKAGG 1215



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
            P + G AGQ+ A G P  +GP      + PP   G      P  PPG    R      S 
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR--GERGSE 1175

Query: 68   SSAGVGGGVGGAQPGSVP 85
             S G  G  G   P   P
Sbjct: 1176 GSPGHPGQPGPPGPPGAP 1193


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 59/204 (28%), Positives = 78/204 (38%), Gaps = 21/204 (10%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGS---PALRPTDRTCSS 67
           P A G+ G+    G   S GP        PP P G   P   PG+   P  +  +     
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405

Query: 68  SSA----GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR-DPPPLGLLVNPRVAGV 122
           + A    G  G  G   PG  P  +  + E G     G  G + +P P+G+   P  AG 
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGE 465

Query: 123 DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGAVG 181
           +G  RG R +P   G     G  GG G +         G     G+ G     G RG+ G
Sbjct: 466 EG-KRGARGEPGPTGLPGPPGERGGPGSR---------GFPGADGVAGPKGPAGERGSPG 515

Query: 182 PAGQHRARLGAAVLRGTAGAPARR 205
           PAG  +   G A   G AG P  +
Sbjct: 516 PAGP-KGSPGEAGRPGEAGLPGAK 538



 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 64/211 (30%), Positives = 74/211 (35%), Gaps = 35/211 (16%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G+ G   APG P + GP+  +    PP P+G      PG+P         S    G  
Sbjct: 399 ANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE--PGAPG--------SKGDTGAK 448

Query: 74  GGVG--GAQPGSVPLGQHLALERGRTLGHGRVGRRD-PPPLGLLVNPRVAGVDGLDR-GG 129
           G  G  G Q    P G     E G+    G  G    P P G    P   G  G D   G
Sbjct: 449 GEPGPVGVQGPPGPAG-----EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAG 503

Query: 130 RLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGRG 178
              PAG     G     G  G AGR   A    A GL    G        G     G  G
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563

Query: 179 AVGPAGQHRARLGAAVL-----RGTAGAPAR 204
             GP G   AR  A V+     +G AG P +
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 60/204 (29%), Positives = 72/204 (35%), Gaps = 45/204 (22%)

Query: 12  PRAAGSAGQRRAPGLPR------SSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRT 64
           P   G  G+R A GLP        +GP  A+        RGL  P  PPG PA  P D+ 
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPG-PAGAPGDKG 782

Query: 65  CSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDG 124
            S  S   G       PG          +RG     G  G   PP           G DG
Sbjct: 783 ESGPSGPAGPTGARGAPG----------DRGEPGPPGPAGFAGPP-----------GADG 821

Query: 125 LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPA 183
              G + +P   G     G  G AG           G    +G +GA  A+G RG+ GP 
Sbjct: 822 -QPGAKGEPGDAGAKGDAGPPGPAG---------PAGPPGPIGNVGAPGAKGARGSAGPP 871

Query: 184 GQ-----HRARLGAAVLRGTAGAP 202
           G         R+G     G AG P
Sbjct: 872 GATGFPGAAGRVGPPGPSGNAGPP 895



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 72/232 (31%), Positives = 87/232 (37%), Gaps = 38/232 (16%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPG--------------SPAL 58
            A G+ G R + G P ++G   A  R  PP P G   P  PPG               PA 
Sbjct: 858  APGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAG 917

Query: 59   RPTD-----RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-G 112
            RP +         +   G  G  G A     P  Q +A +RG     G+ G R  P L G
Sbjct: 918  RPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 977

Query: 113  LLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALGLLA 164
                P   G  G   +RG  G + P G+    G+    G  G  G   R     A G   
Sbjct: 978  PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRG 1037

Query: 165  QVG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
            + G     GA  A G  G VGPAG    + G     G AG PA  VG V  R
Sbjct: 1038 ETGPAGPPGAPGAPGAPGPVGPAG----KSGDRGETGPAG-PAGPVGPVGAR 1084



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 59/208 (28%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 9   VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRG----LEPRHPPGSPALRPTDRT 64
           ++VP   G +G R  PG P + GP   +     P   G    + PR PPG P     D  
Sbjct: 175 ISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 234

Query: 65  CSSSSAGVGGGVGGAQ-----PGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV 119
                     G  G Q     PG+  L   +   RG +   G  G  D  P G    P  
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGL-PGMKGHRGFSGLDGAKG--DAGPAGPKGEPGS 291

Query: 120 AGVDGLDRGGRLDPAGI-GQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHAR 174
            G +G    G++ P G+ G+    G  G AG +       A G     G     G   A 
Sbjct: 292 PGENGAP--GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349

Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAP 202
           G +G  GP G  R   G   +RG  G P
Sbjct: 350 GAKGEAGPQGP-RGSEGPQGVRGEPGPP 376



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 62/221 (28%), Positives = 75/221 (33%), Gaps = 39/221 (17%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRA---RPPRPRG----LEPRHPPGSPALR-------PT 61
           G AG+R  PG P + GPA  +  A    PP P G       + P GSP  +       P 
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652

Query: 62  DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRD-------------- 107
                    GV G +G   P      +    ERG     G  G R               
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712

Query: 108 --PPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165
             P   G    P + G+ G +RG    P   G     G  G  G   +       GL   
Sbjct: 713 GAPGAPGSQGAPGLQGMPG-ERGAAGLPGPKGDRGDAGPKGADGSPGK---DGVRGLTGP 768

Query: 166 VG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
           +G     GA   +G  G  GPAG   AR GA   RG  G P
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGAR-GAPGDRGEPGPP 808



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 68/223 (30%), Positives = 82/223 (36%), Gaps = 35/223 (15%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P  AG  G++  PG   + GP+ A      P  RG++   PPG    R  +    +  A 
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ--GPPGPAGPRGANGAPGNDGAK 709

Query: 72  VGGGVGGAQPGS--VPLGQHLALERGRTLGHGRVG-RRDPPPLGLLVNPRVAGVDGL--- 125
              G  GA PGS   P  Q +  ERG     G  G R D  P G   +P   GV GL   
Sbjct: 710 GDAGAPGA-PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768

Query: 126 -----------DRG--GRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI--- 168
                      D+G  G   PAG     G  G  G  G    A      G   Q G    
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE 828

Query: 169 -GAGHARGGRGAVGPAGQ--------HRARLGAAVLRGTAGAP 202
            G   A+G  G  GPAG         +    GA   RG+AG P
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP 871



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 63/207 (30%), Positives = 73/207 (35%), Gaps = 21/207 (10%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSP-ALRPTDRTCSSSSA 70
            P   G AG+    G    +GPA       PP P G  P    GSP A  P     +    
Sbjct: 895  PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG--PAGEKGSPGADGPAGAPGTPGPQ 952

Query: 71   GVGG--GVGGAQPG-----SVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRV 119
            G+ G  GV G  PG       P     + E G+    G  G R PP    P GL   P  
Sbjct: 953  GIAGQRGVVGL-PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011

Query: 120  AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRG 178
            +G +G   G    P   G     G  G  G    A    A G     G +G     G RG
Sbjct: 1012 SGREGAP-GAEGSPGRDGSP---GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067

Query: 179  AVGPAGQHRARLGAAVLRGTAGAPARR 205
              GPAG     +G    RG AG    R
Sbjct: 1068 ETGPAGP-AGPVGPVGARGPAGPQGPR 1093



 Score = 36.6 bits (83), Expect = 0.041
 Identities = 62/218 (28%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPR-HPPGSPALRPTDRTCS-SS 68
           +P A G  G   +PG    +G         PP P G + R  PPG P  R          
Sbjct: 534 LPGAKGLTGSPGSPGPDGKTG---------PPGPAGQDGRPGPPGPPGARGQAGVMGFPG 584

Query: 69  SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVDG 124
             G  G  G A    VP         G+    G  G + PP    P G       AG  G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAVGPAGK---DGEAGAQGPPGPAGPAGERGEQGPAGSPG 641

Query: 125 LDRGGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGA 179
               G   PAG     G+    GV G  G    +      G   + G+ G     G RGA
Sbjct: 642 FQ--GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699

Query: 180 VGPAGQHRAR--LGAAVLRGTAGAPARRVGVVAERAAS 215
            G  G   A+   GA    G+ GAP  + G+  ER A+
Sbjct: 700 NGAPGNDGAKGDAGAPGAPGSQGAPGLQ-GMPGERGAA 736



 Score = 33.5 bits (75), Expect = 0.34
 Identities = 65/221 (29%), Positives = 73/221 (33%), Gaps = 45/221 (20%)

Query: 15  AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGL--------------------------- 47
           AG  G+   PG P   GP        PP P GL                           
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPG---PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMG 182

Query: 48  --EPRHPPGSP-ALRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVG 104
              PR  PG P A  P          G  G  G   P   P       + G     GR G
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG 242

Query: 105 RRDPP-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGL 162
            R PP P G    P  AG+ G+ +G R    G   + G  G  G AG +         G 
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGM-KGHR----GFSGLDGAKGDAGPAGPKGEPGSPGENGA 297

Query: 163 LAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
             Q+G  G    RG  GA GPAG  R   GA    G AG P
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGA-RGNDGAT---GAAGPP 334



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G +G +  PG P S G       + P  PRG     PPGS      D        G+ G 
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRG-----PPGSAGAPGKD-----GLNGLPGP 1161

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVD 123
            +G   P            RGRT   G VG   PP       P  AG D
Sbjct: 1162 IGPPGP------------RGRTGDAGPVGPPGPPGPPGPPGPPSAGFD 1197



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESR------ARPPRPRGLEPRHPPGSPA 57
            P +AG+ G+    GLP   GP     R        PP P G  P  PPG P+
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPG--PPGPPGPPS 1193


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 62/208 (29%), Positives = 76/208 (36%), Gaps = 26/208 (12%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALR-PTDRTCSSSSAGVG 73
            G  G R  PG+P  SGP   +     P P+G + P  PPG    + P          G  
Sbjct: 1105 GHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEA 1164

Query: 74   GGVGGAQPGSVPLGQHLALERGRTLGHGRVG----------RRDPPPLGLLVNPRVAGVD 123
            G  G   P   P  Q L  +RG     G  G          R DP P G        G+ 
Sbjct: 1165 GMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLM 1224

Query: 124  GLDRGGRLDPAGIGQVLG-LGVLGGAGRQRRALGGQALGLLAQVG----------IGAGH 172
            G D  G   P G+  V G  G  G  G + R     A G   Q+G           G   
Sbjct: 1225 GED--GPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPG 1282

Query: 173  ARGGRGAVGPAGQHRARLGAAVLRGTAG 200
             +G RG++GP G    R+GA    G AG
Sbjct: 1283 PKGSRGSLGPTGA-PGRMGAQGEPGLAG 1309



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 65/214 (30%), Positives = 77/214 (35%), Gaps = 27/214 (12%)

Query: 11   VPRAAGSAGQRRAPG---LPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
            VP   GS G    PG    P   GP        PP  RG + R  P  P   P     S 
Sbjct: 1022 VPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPD-GPAGEQGSR 1080

Query: 68   SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP--PP--LGLLVNPRVAGVD 123
               G  G  G  +PG  P  Q +A ERG     G  G   P  PP   GL   P   G  
Sbjct: 1081 GLKGPPGPQG--RPGR-PGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQ 1137

Query: 124  G-LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG----------I 168
            G +   G + P G    +G   L G    +  LG        GL+ Q G          +
Sbjct: 1138 GPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPM 1197

Query: 169  GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
            G    +G RG  GP G+H  + G   L G  G P
Sbjct: 1198 GPDGLKGDRGDPGPDGEHGEK-GQEGLMGEDGPP 1230



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 64/209 (30%), Positives = 80/209 (38%), Gaps = 44/209 (21%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHP----PGSPALRPTDRTCSSSSAG 71
            G  G R  PG     GP   E    PP   GLE +      PG P L            G
Sbjct: 928  GKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGL-----------DG 976

Query: 72   VGGGVGG-AQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGR 130
            V G  G   +PG  P+G+            G +G      +GL+  P + G  G DR G 
Sbjct: 977  VKGEPGDPGRPG--PVGE-----------QGFMGF-----IGLVGEPGIVGEKG-DR-GM 1016

Query: 131  LDPAGI----GQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGAVGPAGQ 185
            + P G+    G +   G+ GG G           G     G+ GA   RG RG  GPAG+
Sbjct: 1017 MGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGE 1076

Query: 186  HRARLGAAVLRGTAGAPAR--RVGVVAER 212
              +R G     G  G P R  + GV  ER
Sbjct: 1077 QGSR-GLKGPPGPQGRPGRPGQQGVAGER 1104



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 51/200 (25%), Positives = 68/200 (34%), Gaps = 16/200 (8%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
            A G  G +  PGL    G         PP P+G +        A  P          G  
Sbjct: 1295 APGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDR 1354

Query: 74   GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDP 133
            G  G       P  + +   RG+    G+ G   P P G        G +G    G+   
Sbjct: 1355 GDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH--PGPRGWPGPKGSKGAEG--PKGKQGK 1410

Query: 134  AGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVGIGAGHARGGR----------GAVGP 182
            AG     G+  L G    R  +G Q L G+    G+     + G+          G +GP
Sbjct: 1411 AGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGP 1470

Query: 183  AGQHRARLGAAVLRGTAGAP 202
            AG+ R   G A L G  G P
Sbjct: 1471 AGK-RGNPGVAGLPGAQGPP 1489



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 59/214 (27%), Positives = 79/214 (36%), Gaps = 45/214 (21%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSSSSAG 71
           G+ G    PGL  + GP   +     P P G         P GSP  +           G
Sbjct: 688 GAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKG-----YPGRQG 742

Query: 72  VGGGVGGAQP----GSVPLGQHLAL-----ERGRTLGHGRVGRRDPP----------PLG 112
           + G VG   P    G + L     L     ERG     G+ G+   P          P G
Sbjct: 743 LPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPG 802

Query: 113 LLVNPRVAGVDGLDRGGRLDPAGIGQVLG-LGVLGGAGRQRRALGGQAL-GLLAQVG-IG 169
           L  NP   G+ G        P G+  ++G LGVLG  G      G + + GL+  VG  G
Sbjct: 803 LDGNPGELGLPG--------PPGVPGLIGDLGVLGPIGYP----GPKGMKGLMGSVGEPG 850

Query: 170 AGHARGGRGAVGPAGQ--HRARLGAAVLRGTAGA 201
               +G +G  G +G    +   G+  L G  GA
Sbjct: 851 LKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGA 884


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 63/208 (30%), Positives = 81/208 (38%), Gaps = 33/208 (15%)

Query: 15  AGSAGQRRAPGLPRSSGPAWAES---------RARPPRPRGL-EPRHPPGSPALRPTDRT 64
           +G +GQ   PGL   SGP   E          +  P  P+GL   R PPG P L+ T   
Sbjct: 749 SGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGPPGPPGLKGTQ-- 806

Query: 65  CSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR-------DPPPLGLLVNP 117
                 G  G  G   P   P  +  A E G     G VG +       +  P+GL    
Sbjct: 807 ---GEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEV 863

Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
            + G  G ++G R  P  +G     GV+G  G          LGL   VG     ARG  
Sbjct: 864 GMTGSIG-EKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVG-----ARGPP 917

Query: 178 GAVGPAGQHRAR-----LGAAVLRGTAG 200
           G+ GP GQ  +R     LG   ++G  G
Sbjct: 918 GSQGPKGQRGSRGPDGLLGEQGIQGAKG 945



 Score = 34.7 bits (78), Expect = 0.15
 Identities = 60/236 (25%), Positives = 80/236 (33%), Gaps = 49/236 (20%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGL-----------------------E 48
           P   G  G    PGL  S GP      A  P P GL                       E
Sbjct: 668 PGLVGGTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGE 727

Query: 49  PRHP--------PGSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLG 99
           P +P        PG P +R  +  +  +   G+ G  G   P   P    +  + G    
Sbjct: 728 PGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGP 787

Query: 100 HGRVGRRDPP-PLGLLVNPRVAGVDG-LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGG 157
            G +G R PP P GL       G +G +   G L P G     G     G    +  +G 
Sbjct: 788 KGLLGNRGPPGPPGL---KGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGD 844

Query: 158 QA----------LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
           Q           +GL  +VG+ G+   +G RG+ GP G  +   G     G  G P
Sbjct: 845 QGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGP-QGEKGVMGYPGPPGVP 899



 Score = 32.3 bits (72), Expect = 0.77
 Identities = 55/190 (28%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 9    VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALR----P 60
            V VP   G+ GQ+  PG P   G    +        +G +    P   PG P L+    P
Sbjct: 1230 VGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGP 1289

Query: 61   TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
                    + G+ G  G   P   P  Q L   RG   G GR G    P       P V 
Sbjct: 1290 KGIQGYHGADGISGNPGKIGP---PGKQGLPGIRG---GPGRTGLAGAPG-----PPGVK 1338

Query: 121  GVDGLDRG-GRLDPAGIGQVLGLGVLGGAGRQRRALGGQA----LGLLAQVG-IGAGHAR 174
            G  GL    G   P G   + G   + G    R A G Q      GL  Q G  G     
Sbjct: 1339 GSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLT 1398

Query: 175  GGRGAVGPAG 184
            G +G  GP G
Sbjct: 1399 GFQGFPGPKG 1408



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 51/200 (25%), Positives = 63/200 (31%), Gaps = 47/200 (23%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGL----EPRHPPGSPA----LRPTDRTCSS 67
            G  G++   GLP   GP     +   P P G+      R  PG       + PT      
Sbjct: 1074 GEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEV--- 1130

Query: 68   SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
             S G  G +G + P            +G     G VG      LGL+      G+ G  R
Sbjct: 1131 GSRGPPGKIGKSGP------------KGARGTRGAVGH-----LGLMGPDGEPGIPGY-R 1172

Query: 128  GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ-- 185
            G +  P   G     G  G  G     LG                  G RG  GP G   
Sbjct: 1173 GHQGQPGPSGLPGPKGEKGYPGEDSTVLG----------------PPGPRGEPGPVGDQG 1216

Query: 186  HRARLGAAVLRGTAGAPARR 205
             R   GA   +G  G P  R
Sbjct: 1217 ERGEPGAEGYKGHVGVPGLR 1236


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
            sapiens]
          Length = 1424

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
            P A G+ G R APG P   G   A   A P  P G+E    PPG P      +T +    
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244

Query: 71   GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
            G  G  G   P   P G H+   +G     G  G + PP       P G L  P   G+ 
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303

Query: 124  GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
            G   D G +  P   G+    G LG  G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
            G  G R  PG+P   G       A PP PRG L     PG P LR           G+ G
Sbjct: 967  GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015

Query: 75   GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
             +G    PGS         +RG TLG  GR GR   P +  L   +  G  G   G R  
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063

Query: 133  PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
            P   G     G+ G  G++         G L   G  GA  + G  G  G  G H   LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122

Query: 192  AAVLRGTAGAPARR 205
               ++G  G P  R
Sbjct: 1123 FKGIKGLLGPPGIR 1136



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)

Query: 12  PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
           PR A    G +G    PG P SS P    +   P        R  PG  A+        +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
            S G+ G  G   PG  P G  +   +G    HG          G L +P + GVDG   
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470

Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
              L          P G+  + GL GV G  GRQ  A    + G     G+       GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530

Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
               G +G  G   Q   ++G     G  G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
           P   G+ G   APG P  +GP    S + P P P G  P  PPG P   P        S 
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679

Query: 71  GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G  G  G   P   P    +        +G     G  G    P  G +  P + G  GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
             G + +PA +    G G  G  G +  +     +GL    G+       G    RG  G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795

Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
             GP G+           R   G   L G  G   RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G  G++  PG P S G          P P+G  P+  PG P L     T S    G+ 
Sbjct: 44  AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96

Query: 74  G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G        G+ G    + P G  L    G +   G  G    P  G L  P + G  GL
Sbjct: 97  GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
            +G +  PA   + + L   G  G    A G Q L    G    VG        G   A 
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209

Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
           G RG  G  G+    H+   G   L G  G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
            +P   G  G+   PG P   GPA  E     P   GL  +  P             G P 
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134

Query: 58   LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
            +R           G+ G  G   P  +   Q      G     G  G    PP G   NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185

Query: 118  RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
               G  G DRG    P   G+    G +G AG  R   G +  G     G+      G  
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238

Query: 178  GAVGPAGQHRARLGAAVLRGTAGAP 202
            G  GP G           RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)

Query: 3   PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
           P L  T+  P   G+AG +   G P        +++  P  P    P+  PG P    P 
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194

Query: 62  DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
                    G  G +G   P    +G+ +   +G     G  G   PP            
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253

Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
                      G +  P   G  GL       ++G   DP   G+    GV G  G +  
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313

Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
                  GL+ + GI     +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G    PG P S GPA       P  P G  P+   G P L+ T         G  G 
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638

Query: 76  VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
            G A P G + +   +    G     G  G + PP     LG   +P + G D      G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698

Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
           +   G   P G     G  G LG  G+     L G+  GL    G  A    GG G  G 
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757

Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
            G+         +G   L G  G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
            sapiens]
          Length = 1494

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
            P A G+ G R APG P   G   A   A P  P G+E    PPG P      +T +    
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244

Query: 71   GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
            G  G  G   P   P G H+   +G     G  G + PP       P G L  P   G+ 
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303

Query: 124  GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
            G   D G +  P   G+    G LG  G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
            G  G R  PG+P   G       A PP PRG L     PG P LR           G+ G
Sbjct: 967  GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015

Query: 75   GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
             +G    PGS         +RG TLG  GR GR   P +  L   +  G  G   G R  
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063

Query: 133  PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
            P   G     G+ G  G++         G L   G  GA  + G  G  G  G H   LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122

Query: 192  AAVLRGTAGAPARR 205
               ++G  G P  R
Sbjct: 1123 FKGIKGLLGPPGIR 1136



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)

Query: 12  PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
           PR A    G +G    PG P SS P    +   P        R  PG  A+        +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
            S G+ G  G   PG  P G  +   +G    HG          G L +P + GVDG   
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470

Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
              L          P G+  + GL GV G  GRQ  A    + G     G+       GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530

Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
               G +G  G   Q   ++G     G  G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
           P   G+ G   APG P  +GP    S + P P P G  P  PPG P   P        S 
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679

Query: 71  GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G  G  G   P   P    +        +G     G  G    P  G +  P + G  GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
             G + +PA +    G G  G  G +  +     +GL    G+       G    RG  G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795

Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
             GP G+           R   G   L G  G   RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G  G++  PG P S G          P P+G  P+  PG P L     T S    G+ 
Sbjct: 44  AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96

Query: 74  G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G        G+ G    + P G  L    G +   G  G    P  G L  P + G  GL
Sbjct: 97  GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
            +G +  PA   + + L   G  G    A G Q L    G    VG        G   A 
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209

Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
           G RG  G  G+    H+   G   L G  G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
            +P   G  G+   PG P   GPA  E     P   GL  +  P             G P 
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134

Query: 58   LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
            +R           G+ G  G   P  +   Q      G     G  G    PP G   NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185

Query: 118  RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
               G  G DRG    P   G+    G +G AG  R   G +  G     G+      G  
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238

Query: 178  GAVGPAGQHRARLGAAVLRGTAGAP 202
            G  GP G           RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)

Query: 3   PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
           P L  T+  P   G+AG +   G P        +++  P  P    P+  PG P    P 
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194

Query: 62  DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
                    G  G +G   P    +G+ +   +G     G  G   PP            
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253

Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
                      G +  P   G  GL       ++G   DP   G+    GV G  G +  
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313

Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
                  GL+ + GI     +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 3    PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
            P  L  +++P + G  G    PG+    GP        P  PRG   +   PG+P   P 
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405

Query: 62   DRTCSSSSAGVGGGVG 77
                +  S G  G  G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G    PG P S GPA       P  P G  P+   G P L+ T         G  G 
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638

Query: 76  VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
            G A P G + +   +    G     G  G + PP     LG   +P + G D      G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698

Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
           +   G   P G     G  G LG  G+     L G+  GL    G  A    GG G  G 
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757

Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
            G+         +G   L G  G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
            sapiens]
          Length = 1637

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
            P A G+ G R APG P   G   A   A P  P G+E    PPG P      +T +    
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244

Query: 71   GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
            G  G  G   P   P G H+   +G     G  G + PP       P G L  P   G+ 
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303

Query: 124  GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
            G   D G +  P   G+    G LG  G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
            G  G R  PG+P   G       A PP PRG L     PG P LR           G+ G
Sbjct: 967  GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015

Query: 75   GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
             +G    PGS         +RG TLG  GR GR   P +  L   +  G  G   G R  
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063

Query: 133  PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
            P   G     G+ G  G++         G L   G  GA  + G  G  G  G H   LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122

Query: 192  AAVLRGTAGAPARR 205
               ++G  G P  R
Sbjct: 1123 FKGIKGLLGPPGIR 1136



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)

Query: 12  PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
           PR A    G +G    PG P SS P    +   P        R  PG  A+        +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
            S G+ G  G   PG  P G  +   +G    HG          G L +P + GVDG   
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470

Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
              L          P G+  + GL GV G  GRQ  A    + G     G+       GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530

Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
               G +G  G   Q   ++G     G  G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
           P   G+ G   APG P  +GP    S + P P P G  P  PPG P   P        S 
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679

Query: 71  GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G  G  G   P   P    +        +G     G  G    P  G +  P + G  GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
             G + +PA +    G G  G  G +  +     +GL    G+       G    RG  G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795

Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
             GP G+           R   G   L G  G   RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G  G++  PG P S G          P P+G  P+  PG P L     T S    G+ 
Sbjct: 44  AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96

Query: 74  G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G        G+ G    + P G  L    G +   G  G    P  G L  P + G  GL
Sbjct: 97  GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
            +G +  PA   + + L   G  G    A G Q L    G    VG        G   A 
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209

Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
           G RG  G  G+    H+   G   L G  G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
            +P   G  G+   PG P   GPA  E     P   GL  +  P             G P 
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134

Query: 58   LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
            +R           G+ G  G   P  +   Q      G     G  G    PP G   NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185

Query: 118  RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
               G  G DRG    P   G+    G +G AG  R   G +  G     G+      G  
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238

Query: 178  GAVGPAGQHRARLGAAVLRGTAGAP 202
            G  GP G           RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)

Query: 3   PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
           P L  T+  P   G+AG +   G P        +++  P  P    P+  PG P    P 
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194

Query: 62  DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
                    G  G +G   P    +G+ +   +G     G  G   PP            
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253

Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
                      G +  P   G  GL       ++G   DP   G+    GV G  G +  
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313

Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
                  GL+ + GI     +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 3    PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
            P  L  +++P + G  G    PG+    GP        P  PRG   +   PG+P   P 
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405

Query: 62   DRTCSSSSAGVGGGVG 77
                +  S G  G  G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G    PG P S GPA       P  P G  P+   G P L+ T         G  G 
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638

Query: 76  VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
            G A P G + +   +    G     G  G + PP     LG   +P + G D      G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698

Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
           +   G   P G     G  G LG  G+     L G+  GL    G  A    GG G  G 
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757

Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
            G+         +G   L G  G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1670

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
            P A G+ G R APG P   G   A   A P  P G+E    PPG P      +T +    
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244

Query: 71   GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
            G  G  G   P   P G H+   +G     G  G + PP       P G L  P   G+ 
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303

Query: 124  GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
            G   D G +  P   G+    G LG  G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
            G  G R  PG+P   G       A PP PRG L     PG P LR           G+ G
Sbjct: 967  GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015

Query: 75   GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
             +G    PGS         +RG TLG  GR GR   P +  L   +  G  G   G R  
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063

Query: 133  PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
            P   G     G+ G  G++         G L   G  GA  + G  G  G  G H   LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122

Query: 192  AAVLRGTAGAPARR 205
               ++G  G P  R
Sbjct: 1123 FKGIKGLLGPPGIR 1136



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)

Query: 12  PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
           PR A    G +G    PG P SS P    +   P        R  PG  A+        +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
            S G+ G  G   PG  P G  +   +G    HG          G L +P + GVDG   
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470

Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
              L          P G+  + GL GV G  GRQ  A    + G     G+       GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530

Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
               G +G  G   Q   ++G     G  G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
           P   G+ G   APG P  +GP    S + P P P G  P  PPG P   P        S 
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679

Query: 71  GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G  G  G   P   P    +        +G     G  G    P  G +  P + G  GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
             G + +PA +    G G  G  G +  +     +GL    G+       G    RG  G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795

Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
             GP G+           R   G   L G  G   RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 14  AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
           A G  G++  PG P S G          P P+G  P+  PG P L     T S    G+ 
Sbjct: 44  AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96

Query: 74  G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
           G        G+ G    + P G  L    G +   G  G    P  G L  P + G  GL
Sbjct: 97  GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152

Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
            +G +  PA   + + L   G  G    A G Q L    G    VG        G   A 
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209

Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
           G RG  G  G+    H+   G   L G  G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
            +P   G  G+   PG P   GPA  E     P   GL  +  P             G P 
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134

Query: 58   LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
            +R           G+ G  G   P  +   Q      G     G  G    PP G   NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185

Query: 118  RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
               G  G DRG    P   G+    G +G AG  R   G +  G     G+      G  
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238

Query: 178  GAVGPAGQHRARLGAAVLRGTAGAP 202
            G  GP G           RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)

Query: 3   PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
           P L  T+  P   G+AG +   G P        +++  P  P    P+  PG P    P 
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194

Query: 62  DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
                    G  G +G   P    +G+ +   +G     G  G   PP            
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253

Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
                      G +  P   G  GL       ++G   DP   G+    GV G  G +  
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313

Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
                  GL+ + GI     +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 3    PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
            P  L  +++P + G  G    PG+    GP        P  PRG   +   PG+P   P 
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405

Query: 62   DRTCSSSSAGVGGGVG 77
                +  S G  G  G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G    PG P S GPA       P  P G  P+   G P L+ T         G  G 
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638

Query: 76  VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
            G A P G + +   +    G     G  G + PP     LG   +P + G D      G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698

Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
           +   G   P G     G  G LG  G+     L G+  GL    G  A    GG G  G 
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757

Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
            G+         +G   L G  G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/213 (29%), Positives = 76/213 (35%), Gaps = 40/213 (18%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P A G  G R  PG P + GP  A   A PP  +G     PPG   + P +R  +  +  
Sbjct: 710 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-----PPGLQGM-PGERGAAGIAGP 763

Query: 72  VG--GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL--D 126
            G  G VG   P   P         G+  G G  G   PP P G        G  G    
Sbjct: 764 KGDRGDVGEKGPEGAP---------GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 814

Query: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQH 186
            G R  P   G+    G  G AG                   GA    G +G  G AGQ 
Sbjct: 815 AGARGAPGERGETGPPGPAGFAGPP-----------------GADGQPGAKGEQGEAGQ- 856

Query: 187 RARLGAAVLRGTAGAPARR--VGVVAERAASAA 217
           +   GA   +G +GAP  +   GV   + A  A
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA 889



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 69/216 (31%), Positives = 82/216 (37%), Gaps = 47/216 (21%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSSSSAG 71
           G  G+  A G P  +GPA        P P G +    P  PPG    +P D+       G
Sbjct: 633 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG-KPGDQ-------G 684

Query: 72  VGGGVGGAQPGSV-PLGQH-LALERGRTLGHGRVGRRDPP----------------PLGL 113
           V G  G   PG V P G+     ERG     G  G R  P                P G 
Sbjct: 685 VPGEAGA--PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742

Query: 114 LVNPRVAGVDGLDRG--GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG--- 167
              P + G+ G +RG  G   P G  G V   G  G  G+     GG+  GL   +G   
Sbjct: 743 QGPPGLQGMPG-ERGAAGIAGPKGDRGDVGEKGPEGAPGKD----GGR--GLTGPIGPPG 795

Query: 168 -IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
             GA   +G  G  GPAG   AR GA   RG  G P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGAR-GAPGERGETGPP 830



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 64/223 (28%), Positives = 74/223 (33%), Gaps = 24/223 (10%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
           P   G+ G+  APG+   SG         P  PRGL        P G+   R  D     
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG--QP 350

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR----------DPPPLGLLVNP 117
             AG  G VG A     P       E G T   G  G +           P P G   NP
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 410

Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-GAGHARG 175
              G+ G    G     GI    G  G  G  G Q         G   + GI G    +G
Sbjct: 411 GTDGIPGAK--GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 468

Query: 176 GRGAVGPAGQHRA--RLGAAVLRGTAGAP--ARRVGVVAERAA 214
            +G  GPAG   A    G    RG  G P     +G   ER A
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGA 511



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 28/203 (13%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P  AG  G+R A G P   GP         P  RG   +     P   P +R  S  +  
Sbjct: 482 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 541

Query: 72  VGGGVGGAQPG--SVPLGQHLALERGRTLGHGRV---------GRRDPP-PLGLLVNPRV 119
            G      +PG   +P  + L    G     G+V         GR  PP P G    P V
Sbjct: 542 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 601

Query: 120 AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGA 179
            G  G  +G   +P   G+    G+ G  G   R L G+          G   A G  G 
Sbjct: 602 MGFPG-PKGANGEPGKAGE---KGLPGAPG--LRGLPGKD---------GETGAAGPPGP 646

Query: 180 VGPAGQHRARLGAAVLRGTAGAP 202
            GPAG+ R   GA    G  G P
Sbjct: 647 AGPAGE-RGEQGAPGPSGFQGLP 668



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 61/222 (27%), Positives = 74/222 (33%), Gaps = 35/222 (15%)

Query: 11  VPRAAGSAGQ---RRAPGLPRSSGPAWAESRARPPRPRGLE------------------- 48
           +P A GSAG      APG P   GP   +    P  P+G                     
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474

Query: 49  PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQP---GSVPLGQHLALERGRTLGHGRVGR 105
           P  P G+P   P        + G  GGVG   P      P  +    + G     G  G 
Sbjct: 475 PAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532

Query: 106 RDPP----PLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
           R P     P G   +P   G  GL   RG    P   G    +G  G  G   R      
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592

Query: 160 LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAG 200
            G   Q G+ G    +G  G  G AG+ +   GA  LRG  G
Sbjct: 593 QGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG 633



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 56/201 (27%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G++ APG     G         PP P G     PPG P L       +  + G    
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-----PPGPPGL--GGNFAAQMAGGFDEK 190

Query: 76  VGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLD 126
            GGAQ G +  P+G               +G R PP       P G   NP   G  G+ 
Sbjct: 191 AGGAQLGVMQGPMGP--------------MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 236

Query: 127 --RGGRLDPAGIGQVLGLGVLGGAGR--QRRALGGQ-ALGLLAQVGIGAGHARGGRGAVG 181
              G R  P   G+    G  G  G+  +R   G Q A G     G+     +G RG  G
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG--VKGHRGYPG 294

Query: 182 PAGQHRARLGAAVLRGTAGAP 202
             G  +   GA  ++G +G+P
Sbjct: 295 LDGA-KGEAGAPGVKGESGSP 314



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 67/221 (30%), Positives = 82/221 (37%), Gaps = 35/221 (15%)

Query: 9    VTVPRAA-GSAGQRRAPGLPRSSG---PAWAESRARPPRPRGLEPRHPP----------- 53
            VT P+ A G+ G   A G P ++G   P  +     PP P G   +  P           
Sbjct: 880  VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 939

Query: 54   --GSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
              G P L+ P          G  G  G   P   P  Q LA +RG     G+ G R  P 
Sbjct: 940  RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAGQRGIVGLPGQRGERGFPG 996

Query: 111  L-GLLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALG 161
            L G    P   G  G   DRG  G + P G+    G+    G  G  G   R       G
Sbjct: 997  LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 1056

Query: 162  LLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
               + G +GA  A G  G+ GPAG      G    RG AGA
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGP----TGKQGDRGEAGA 1093



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 59/196 (30%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P   G  G    PG P  SGP              + PR PPG P  +P D       AG
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGP--------------MGPRGPPGPPG-KPGD----DGEAG 258

Query: 72  VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRL 131
             G  G               ERG     G  G    P L  +   R  G  GLD  G  
Sbjct: 259 KPGKAG---------------ERGPPGPQGARGFPGTPGLPGVKGHR--GYPGLD--GAK 299

Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAVGPAGQHRAR 189
             AG   V G     G       +G + L G   + G  GA  ARG  G  GPAG     
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PGP 358

Query: 190 LGAAVLRGTAGAPARR 205
           +G A   G  GAP  +
Sbjct: 359 VGPAGGPGFPGAPGAK 374



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 22/94 (23%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G  G     GLP   GP+  +  + P  P G  PR PPG     P   +    + G+ G 
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSG--PRGPPG-----PVGPSGKDGANGIPGP 1183

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
            +G   P            RGR+   G  G   PP
Sbjct: 1184 IGPPGP------------RGRS---GETGPAGPP 1202


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/213 (29%), Positives = 76/213 (35%), Gaps = 40/213 (18%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P A G  G R  PG P + GP  A   A PP  +G     PPG   + P +R  +  +  
Sbjct: 641 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-----PPGLQGM-PGERGAAGIAGP 694

Query: 72  VG--GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL--D 126
            G  G VG   P   P         G+  G G  G   PP P G        G  G    
Sbjct: 695 KGDRGDVGEKGPEGAP---------GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 745

Query: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQH 186
            G R  P   G+    G  G AG                   GA    G +G  G AGQ 
Sbjct: 746 AGARGAPGERGETGPPGPAGFAGPP-----------------GADGQPGAKGEQGEAGQ- 787

Query: 187 RARLGAAVLRGTAGAPARR--VGVVAERAASAA 217
           +   GA   +G +GAP  +   GV   + A  A
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA 820



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 69/216 (31%), Positives = 82/216 (37%), Gaps = 47/216 (21%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSSSSAG 71
           G  G+  A G P  +GPA        P P G +    P  PPG    +P D+       G
Sbjct: 564 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG-KPGDQ-------G 615

Query: 72  VGGGVGGAQPGSV-PLGQH-LALERGRTLGHGRVGRRDPP----------------PLGL 113
           V G  G   PG V P G+     ERG     G  G R  P                P G 
Sbjct: 616 VPGEAGA--PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673

Query: 114 LVNPRVAGVDGLDRG--GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG--- 167
              P + G+ G +RG  G   P G  G V   G  G  G+     GG+  GL   +G   
Sbjct: 674 QGPPGLQGMPG-ERGAAGIAGPKGDRGDVGEKGPEGAPGKD----GGR--GLTGPIGPPG 726

Query: 168 -IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
             GA   +G  G  GPAG   AR GA   RG  G P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGAR-GAPGERGETGPP 761



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 64/223 (28%), Positives = 74/223 (33%), Gaps = 24/223 (10%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
           P   G+ G+  APG+   SG         P  PRGL        P G+   R  D     
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG--QP 281

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR----------DPPPLGLLVNP 117
             AG  G VG A     P       E G T   G  G +           P P G   NP
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 341

Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-GAGHARG 175
              G+ G    G     GI    G  G  G  G Q         G   + GI G    +G
Sbjct: 342 GTDGIPGAK--GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 399

Query: 176 GRGAVGPAGQHRA--RLGAAVLRGTAGAP--ARRVGVVAERAA 214
            +G  GPAG   A    G    RG  G P     +G   ER A
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGA 442



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 28/203 (13%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P  AG  G+R A G P   GP         P  RG   +     P   P +R  S  +  
Sbjct: 413 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 472

Query: 72  VGGGVGGAQPG--SVPLGQHLALERGRTLGHGRV---------GRRDPP-PLGLLVNPRV 119
            G      +PG   +P  + L    G     G+V         GR  PP P G    P V
Sbjct: 473 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 532

Query: 120 AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGA 179
            G  G  +G   +P   G+    G+ G  G   R L G+          G   A G  G 
Sbjct: 533 MGFPG-PKGANGEPGKAGE---KGLPGAPG--LRGLPGKD---------GETGAAGPPGP 577

Query: 180 VGPAGQHRARLGAAVLRGTAGAP 202
            GPAG+ R   GA    G  G P
Sbjct: 578 AGPAGE-RGEQGAPGPSGFQGLP 599



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 61/222 (27%), Positives = 74/222 (33%), Gaps = 35/222 (15%)

Query: 11  VPRAAGSAGQ---RRAPGLPRSSGPAWAESRARPPRPRGLE------------------- 48
           +P A GSAG      APG P   GP   +    P  P+G                     
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405

Query: 49  PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQP---GSVPLGQHLALERGRTLGHGRVGR 105
           P  P G+P   P        + G  GGVG   P      P  +    + G     G  G 
Sbjct: 406 PAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 463

Query: 106 RDPP----PLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
           R P     P G   +P   G  GL   RG    P   G    +G  G  G   R      
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523

Query: 160 LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAG 200
            G   Q G+ G    +G  G  G AG+ +   GA  LRG  G
Sbjct: 524 QGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG 564



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 56/201 (27%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G++ APG     G         PP P G     PPG P L       +  + G    
Sbjct: 69  GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-----PPGPPGL--GGNFAAQMAGGFDEK 121

Query: 76  VGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLD 126
            GGAQ G +  P+G               +G R PP       P G   NP   G  G+ 
Sbjct: 122 AGGAQLGVMQGPMGP--------------MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167

Query: 127 --RGGRLDPAGIGQVLGLGVLGGAGR--QRRALGGQ-ALGLLAQVGIGAGHARGGRGAVG 181
              G R  P   G+    G  G  G+  +R   G Q A G     G+     +G RG  G
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG--VKGHRGYPG 225

Query: 182 PAGQHRARLGAAVLRGTAGAP 202
             G  +   GA  ++G +G+P
Sbjct: 226 LDGA-KGEAGAPGVKGESGSP 245



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 67/221 (30%), Positives = 82/221 (37%), Gaps = 35/221 (15%)

Query: 9    VTVPRAA-GSAGQRRAPGLPRSSG---PAWAESRARPPRPRGLEPRHPP----------- 53
            VT P+ A G+ G   A G P ++G   P  +     PP P G   +  P           
Sbjct: 811  VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 870

Query: 54   --GSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
              G P L+ P          G  G  G   P   P  Q LA +RG     G+ G R  P 
Sbjct: 871  RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAGQRGIVGLPGQRGERGFPG 927

Query: 111  L-GLLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALG 161
            L G    P   G  G   DRG  G + P G+    G+    G  G  G   R       G
Sbjct: 928  LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 987

Query: 162  LLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
               + G +GA  A G  G+ GPAG      G    RG AGA
Sbjct: 988  DRGETGAVGAPGAPGPPGSPGPAGP----TGKQGDRGEAGA 1024



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 59/196 (30%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
           P   G  G    PG P  SGP              + PR PPG P  +P D       AG
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGP--------------MGPRGPPGPPG-KPGD----DGEAG 189

Query: 72  VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRL 131
             G  G               ERG     G  G    P L  +   R  G  GLD  G  
Sbjct: 190 KPGKAG---------------ERGPPGPQGARGFPGTPGLPGVKGHR--GYPGLD--GAK 230

Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAVGPAGQHRAR 189
             AG   V G     G       +G + L G   + G  GA  ARG  G  GPAG     
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PGP 289

Query: 190 LGAAVLRGTAGAPARR 205
           +G A   G  GAP  +
Sbjct: 290 VGPAGGPGFPGAPGAK 305



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 22/94 (23%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G  G     GLP   GP+  +  + P  P G  PR PPG     P   +    + G+ G 
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSG--PRGPPG-----PVGPSGKDGANGIPGP 1114

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
            +G   P            RGR+   G  G   PP
Sbjct: 1115 IGPPGP------------RGRS---GETGPAGPP 1133


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 67/216 (31%), Positives = 76/216 (35%), Gaps = 35/216 (16%)

Query: 15  AGSAGQRRAPGLPRSSGP---------AWAESRARPPRPRGLE----PRHPPGSPALRPT 61
           AG  GQR APG     GP         A       PP P G +    P  PPG    +P 
Sbjct: 635 AGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGG-KPG 693

Query: 62  DRTCSSSSAGVG-----GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------- 109
           D+        VG     G  G       P    L  E+G   GHG  G +  P       
Sbjct: 694 DQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPG 753

Query: 110 ---PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQV 166
              P GL   P   G+ G   G + D  GIG+    G  G  G   R L G  LG     
Sbjct: 754 DTGPPGLQGMPGERGIAGTP-GPKGDRGGIGEKGAEGTAGNDG--ARGLPG-PLGPPGPA 809

Query: 167 G-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
           G  G     G RG VGP G  R   G+    G  GA
Sbjct: 810 GPTGEKGEPGPRGLVGPPGS-RGNPGSRGENGPTGA 844



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 57/192 (29%), Positives = 67/192 (34%), Gaps = 32/192 (16%)

Query: 15  AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
           AG+ G R  PG     GPA        P PRGL    PPGS          S    G  G
Sbjct: 791 AGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLV--GPPGS-----RGNPGSRGENGPTG 843

Query: 75  GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD--RGGRLD 132
            VG A P        +  E G     G  G   P P GL  +P   G +G+   +GGR  
Sbjct: 844 AVGFAGPQGPDGQPGVKGEPGEPGQKGDAG--SPGPQGLAGSPGPHGPNGVPGLKGGRGT 901

Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGA 192
               G     G  G AGR                 +G     G  G  GP G+   + G 
Sbjct: 902 QGPPG---ATGFPGSAGR-----------------VGPPGPAGAPGPAGPLGE-PGKEGP 940

Query: 193 AVLRGTAGAPAR 204
             LRG  G+  R
Sbjct: 941 PGLRGDPGSHGR 952



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 19/197 (9%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
            P +AG  G     G P  +GP     +  PP  RG      PGS   R  DR  +    G
Sbjct: 911  PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRG-----DPGSHG-RVGDRGPAGPPGG 964

Query: 72   VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-GLLVNPRVAGVDGL 125
             G     G  G   P   P       +RG     G+ G R  P L G    P   G  G 
Sbjct: 965  PGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGA 1024

Query: 126  DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ 185
              G +  P  +G     G +G  G +  A      G    VG      RG RG  GPAG 
Sbjct: 1025 -TGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVG-----ERGDRGDPGPAGL 1078

Query: 186  HRARLGAAVLRGTAGAP 202
              ++ GA    G  GAP
Sbjct: 1079 PGSQ-GAPGTPGPVGAP 1094



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 68/238 (28%), Positives = 87/238 (36%), Gaps = 45/238 (18%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-------------PRHPPGSPA 57
           VP   G  G+    G P S GP         P PRG +                PPG P+
Sbjct: 121 VPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPS 180

Query: 58  LRPTD---RTCSSSSAGVG--GGVG---GAQPGSV-PLG----QHLALERGRTLGHGRVG 104
               D   R  S+  AG+    G+G   G  PGSV P+G    Q L  ++G     G  G
Sbjct: 181 HPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPG 240

Query: 105 R-RDPPPLGLLVN------PRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAG-------- 149
              DP P+G + +      P   G DG + G   +P  +G     G  G  G        
Sbjct: 241 EPGDPGPMGPIGSRGPEGPPGKPGEDG-EPGRNGNPGEVGFAGSPGARGFPGAPGLPGLK 299

Query: 150 --RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
             R  + L G    + A    G     G  GA+GP G  R   G     G  GAP +R
Sbjct: 300 GHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGRLGPQGAPGQR 356



 Score = 35.8 bits (81), Expect = 0.069
 Identities = 61/234 (26%), Positives = 82/234 (35%), Gaps = 38/234 (16%)

Query: 3   PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTD 62
           P  + T   P A G  G     G P S+GP  +        P+G+  R  PG P +    
Sbjct: 419 PGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGI--RGQPGDPGVPGFK 476

Query: 63  RTCSSSSA----GVGGGVG----------GAQPGSV----PLGQHLAL-------ERGRT 97
                       G+ G +G             PG+V    P+G+  A          G  
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP 536

Query: 98  LGHGRVGRRDP----PPLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQ 151
              G  G R P     P G   +P   G  GL   RG   +P   G    LG LG  G  
Sbjct: 537 GPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGED 596

Query: 152 RRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
            R     ++G+  Q G +G    +G  G  G  G+     G A + G  GAP +
Sbjct: 597 GRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGE----AGNAGVPGQRGAPGK 646



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 62/232 (26%), Positives = 79/232 (34%), Gaps = 63/232 (27%)

Query: 16  GSAGQRRAPGLPRSSGP---------------AWAESRARPPRPRGLE----------PR 50
           G+ GQR A G+P   GP                  +  A P   RG E          P 
Sbjct: 351 GAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP 410

Query: 51  HPPGSPALR---PTDRTCS----SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRV 103
            P GSP L     TD T      + S G  G  G A P   P  Q     +G     G  
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP 470

Query: 104 G----------RRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
           G          + +P P G+       G +G  RG R DP  +G    +G  G  G +  
Sbjct: 471 GVPGFKGEAGPKGEPGPHGIQGPIGPPGEEG-KRGPRGDPGTVGPPGPVGERGAPGNR-- 527

Query: 154 ALGGQALGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
                  G     G+ G   A+G RG VG +G           +G+ G P R
Sbjct: 528 -------GFPGSDGLPGPKGAQGERGPVGSSGP----------KGSQGDPGR 562



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 58/211 (27%), Positives = 73/211 (34%), Gaps = 30/211 (14%)

Query: 11  VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPALRP 60
           +P   G AG     G   S GP+       PP  +G+           P+   G    + 
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 786

Query: 61  TDRTCSSSSA-GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV 119
            + T  +  A G+ G +G   P   P G     E+G     G VG     P G   NP  
Sbjct: 787 AEGTAGNDGARGLPGPLGPPGPAG-PTG-----EKGEPGPRGLVG-----PPGSRGNPGS 835

Query: 120 AGVDG-LDRGGRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHA 173
            G +G     G   P G  GQ    G  G  G++  A      GL    G     G    
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895

Query: 174 RGGRGAVGPAGQ--HRARLGAAVLRGTAGAP 202
           +GGRG  GP G        G     G AGAP
Sbjct: 896 KGGRGTQGPPGATGFPGSAGRVGPPGPAGAP 926



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG---- 71
            G  G     GLP   GP   +  A  P P G  PR PPG   + P+ +  +    G    
Sbjct: 1143 GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFG--PRGPPGP--VGPSGKEGNPGPLGPIGP 1198

Query: 72   --VGGGVGGAQPGSVPLGQ-----------HLALERGRTLGHGRVGRRDPPP 110
              V G VG A P   P G+           HL    G  +GH      DP P
Sbjct: 1199 PGVRGSVGEAGPEGPP-GEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLP 1249


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
           P   G AG    PG+  + GP        PP   GL        PPG+  + P       
Sbjct: 315 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 374

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
              G       AQ  ++     LAL RG     G  GR  P PLG   +P + G      
Sbjct: 375 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 426

Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
            G L P G     GL G  G AGR+ RA    A G+    G+     RG  G  G  G+ 
Sbjct: 427 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 484

Query: 186 -HRARLGAAVLRGTAGAPARR 205
            HR   GA  L G  G    R
Sbjct: 485 GHRGDTGAQGLPGPPGEDGER 505



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
            P   G  G    PGL  + GP+     A  P  RG      P  PPG P   P     ++
Sbjct: 901  PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 958

Query: 68   SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
               GV G  G       P+G       GR    G VG   P P G    P VAG DG D+
Sbjct: 959  GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 1000

Query: 128  GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
            G   DP   G     G  G  G           G +  VG  GA  A G  GA GP G  
Sbjct: 1001 GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1051

Query: 187  RARLGAAVLRGTAGAP 202
             A+ G    RG  G P
Sbjct: 1052 GAK-GDEGTRGFNGPP 1066



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
            G +GQ   PG P   GP   +     P P G      PPG    R  D   +    G  G
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1211

Query: 75   GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
              G  QPGS                 G  G   PP PLG        G +G    +G + 
Sbjct: 1212 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1253

Query: 132  DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
            DP  IG     G +G AG   +       GL   VG  G   A G  G  GP G      
Sbjct: 1254 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1309

Query: 191  GAAVLRGTAGAPARR 205
            G   LRG AGA   +
Sbjct: 1310 GLPGLRGDAGAKGEK 1324



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)

Query: 10  TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
           T PR  G  G R A G   + G +  +    PP  RGL           P+ PPG P   
Sbjct: 757 TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 814

Query: 59  ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
                P  R       G  G  G   P  V   Q  A E G     G  G   PP  G  
Sbjct: 815 GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 868

Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
             P  AG +G  +G    P   G+    G+ G  G   R L G A       G G     
Sbjct: 869 GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 919

Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
           G  G  GPAG    R GAA   G  G P R
Sbjct: 920 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 948



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
           P   G  G    PG P   GP   +    P  P+G  P   PG   ++  D         
Sbjct: 592 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 649

Query: 67  -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
                          GV G     GV G++    P G      +GRT   G  G  DP P
Sbjct: 650 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 699

Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
            GL+      GV GL    GR  P G    LG     GA  ++ A G            G
Sbjct: 700 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 746

Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
               RG RG  GP GQ   R   G +  +GT+G
Sbjct: 747 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 779



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G+ G   A G P  +GP      A  P P GL  R  PGS  +    R  ++  AG  G 
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1305

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
            VG   PG   L       RG     G  G   P  +GL+  P   G  G DRG       
Sbjct: 1306 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1353

Query: 136  IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
             GQ   +G+ G +G         L G A    A+   G G  +G +G  GP G
Sbjct: 1354 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1406



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
            A G  G+   PG P S GP        PP P G   R P GSP    R   +        
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1257

Query: 72   VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
            +G     G VG A P   P    L    G     GR    G+  PP  G +  P + G+ 
Sbjct: 1258 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1315

Query: 124  GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
            G D G + +    G +   G++G  G Q     R L G   + G   ++GI         
Sbjct: 1316 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371

Query: 169  -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
                   G    +G +GA GP G      G   ++G  G P
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1408



 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
            +P A+G  G    PGLP  +GP  A+    P  P+G +  + PPG P
Sbjct: 1362 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1408



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G+   PG P   G    + +  PP P G+    P G           ++   G  G 
Sbjct: 809 GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 855

Query: 76  VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
            G   P   P  Q L    G+    G  G   PP       P GL   P   G+ G   G
Sbjct: 856 RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 912

Query: 129 ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
               G   P+G       G  G  G +  A  G  +G   + G        G     G +
Sbjct: 913 PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 967

Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
           G +GP G+   + G   L G AG P
Sbjct: 968 GPIGPTGRDGVQ-GPVGLPGPAGPP 991


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
           P   G AG    PG+  + GP        PP   GL        PPG+  + P       
Sbjct: 294 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 353

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
              G       AQ  ++     LAL RG     G  GR  P PLG   +P + G      
Sbjct: 354 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 405

Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
            G L P G     GL G  G AGR+ RA    A G+    G+     RG  G  G  G+ 
Sbjct: 406 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 463

Query: 186 -HRARLGAAVLRGTAGAPARR 205
            HR   GA  L G  G    R
Sbjct: 464 GHRGDTGAQGLPGPPGEDGER 484



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
            P   G  G    PGL  + GP+     A  P  RG      P  PPG P   P     ++
Sbjct: 880  PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 937

Query: 68   SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
               GV G  G       P+G       GR    G VG   P P G    P VAG DG D+
Sbjct: 938  GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 979

Query: 128  GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
            G   DP   G     G  G  G           G +  VG  GA  A G  GA GP G  
Sbjct: 980  GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1030

Query: 187  RARLGAAVLRGTAGAP 202
             A+ G    RG  G P
Sbjct: 1031 GAK-GDEGTRGFNGPP 1045



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
            G +GQ   PG P   GP   +     P P G      PPG    R  D   +    G  G
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1190

Query: 75   GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
              G  QPGS                 G  G   PP PLG        G +G    +G + 
Sbjct: 1191 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1232

Query: 132  DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
            DP  IG     G +G AG   +       GL   VG  G   A G  G  GP G      
Sbjct: 1233 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1288

Query: 191  GAAVLRGTAGAPARR 205
            G   LRG AGA   +
Sbjct: 1289 GLPGLRGDAGAKGEK 1303



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)

Query: 10  TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
           T PR  G  G R A G   + G +  +    PP  RGL           P+ PPG P   
Sbjct: 736 TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 793

Query: 59  ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
                P  R       G  G  G   P  V   Q  A E G     G  G   PP  G  
Sbjct: 794 GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 847

Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
             P  AG +G  +G    P   G+    G+ G  G   R L G A       G G     
Sbjct: 848 GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 898

Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
           G  G  GPAG    R GAA   G  G P R
Sbjct: 899 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 927



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
           P   G  G    PG P   GP   +    P  P+G  P   PG   ++  D         
Sbjct: 571 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 628

Query: 67  -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
                          GV G     GV G++    P G      +GRT   G  G  DP P
Sbjct: 629 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 678

Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
            GL+      GV GL    GR  P G    LG     GA  ++ A G            G
Sbjct: 679 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 725

Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
               RG RG  GP GQ   R   G +  +GT+G
Sbjct: 726 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 758



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G+ G   A G P  +GP      A  P P GL  R  PGS  +    R  ++  AG  G 
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1284

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
            VG   PG   L       RG     G  G   P  +GL+  P   G  G DRG       
Sbjct: 1285 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1332

Query: 136  IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
             GQ   +G+ G +G         L G A    A+   G G  +G +G  GP G
Sbjct: 1333 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1385



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
            A G  G+   PG P S GP        PP P G   R P GSP    R   +        
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1236

Query: 72   VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
            +G     G VG A P   P    L    G     GR    G+  PP  G +  P + G+ 
Sbjct: 1237 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1294

Query: 124  GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
            G D G + +    G +   G++G  G Q     R L G   + G   ++GI         
Sbjct: 1295 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350

Query: 169  -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
                   G    +G +GA GP G      G   ++G  G P
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1387



 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
            +P A+G  G    PGLP  +GP  A+    P  P+G +  + PPG P
Sbjct: 1341 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1387



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 16  GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
           G  G+   PG P   G    + +  PP P G+    P G           ++   G  G 
Sbjct: 788 GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 834

Query: 76  VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
            G   P   P  Q L    G+    G  G   PP       P GL   P   G+ G   G
Sbjct: 835 RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 891

Query: 129 ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
               G   P+G       G  G  G +  A  G  +G   + G        G     G +
Sbjct: 892 PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 946

Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
           G +GP G+   + G   L G AG P
Sbjct: 947 GPIGPTGRDGVQ-GPVGLPGPAGPP 970


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
           P   G AG    PG+  + GP        PP   GL        PPG+  + P       
Sbjct: 401 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 460

Query: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
              G       AQ  ++     LAL RG     G  GR  P PLG   +P + G      
Sbjct: 461 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 512

Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
            G L P G     GL G  G AGR+ RA    A G+    G+     RG  G  G  G+ 
Sbjct: 513 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 570

Query: 186 -HRARLGAAVLRGTAGAPARR 205
            HR   GA  L G  G    R
Sbjct: 571 GHRGDTGAQGLPGPPGEDGER 591



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
            P   G  G    PGL  + GP+     A  P  RG      P  PPG P   P     ++
Sbjct: 987  PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 1044

Query: 68   SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
               GV G  G       P+G       GR    G VG   P P G    P VAG DG D+
Sbjct: 1045 GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 1086

Query: 128  GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
            G   DP   G     G  G  G           G +  VG  GA  A G  GA GP G  
Sbjct: 1087 GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1137

Query: 187  RARLGAAVLRGTAGAP 202
             A+ G    RG  G P
Sbjct: 1138 GAK-GDEGTRGFNGPP 1152



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
            G +GQ   PG P   GP   +     P P G      PPG    R  D   +    G  G
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1297

Query: 75   GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
              G  QPGS                 G  G   PP PLG        G +G    +G + 
Sbjct: 1298 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1339

Query: 132  DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
            DP  IG     G +G AG   +       GL   VG  G   A G  G  GP G      
Sbjct: 1340 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1395

Query: 191  GAAVLRGTAGAPARR 205
            G   LRG AGA   +
Sbjct: 1396 GLPGLRGDAGAKGEK 1410



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)

Query: 10   TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
            T PR  G  G R A G   + G +  +    PP  RGL           P+ PPG P   
Sbjct: 843  TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 900

Query: 59   ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
                 P  R       G  G  G   P  V   Q  A E G     G  G   PP  G  
Sbjct: 901  GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 954

Query: 115  VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
              P  AG +G  +G    P   G+    G+ G  G   R L G A       G G     
Sbjct: 955  GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 1005

Query: 175  GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
            G  G  GPAG    R GAA   G  G P R
Sbjct: 1006 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 1034



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
           P   G  G    PG P   GP   +    P  P+G  P   PG   ++  D         
Sbjct: 678 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 735

Query: 67  -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
                          GV G     GV G++    P G      +GRT   G  G  DP P
Sbjct: 736 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 785

Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
            GL+      GV GL    GR  P G    LG     GA  ++ A G            G
Sbjct: 786 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 832

Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
               RG RG  GP GQ   R   G +  +GT+G
Sbjct: 833 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 865



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G+ G   A G P  +GP      A  P P GL  R  PGS  +    R  ++  AG  G 
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1391

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
            VG   PG   L       RG     G  G   P  +GL+  P   G  G DRG       
Sbjct: 1392 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1439

Query: 136  IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
             GQ   +G+ G +G         L G A    A+   G G  +G +G  GP G
Sbjct: 1440 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1492



 Score = 38.1 bits (87), Expect = 0.014
 Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)

Query: 14   AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
            A G  G+   PG P S GP        PP P G   R P GSP    R   +        
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1343

Query: 72   VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
            +G     G VG A P   P    L    G     GR    G+  PP  G +  P + G+ 
Sbjct: 1344 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1401

Query: 124  GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
            G D G + +    G +   G++G  G Q     R L G   + G   ++GI         
Sbjct: 1402 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457

Query: 169  -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
                   G    +G +GA GP G      G   ++G  G P
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1494



 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
            +P A+G  G    PGLP  +GP  A+    P  P+G +  + PPG P
Sbjct: 1448 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1494



 Score = 32.7 bits (73), Expect = 0.59
 Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
            G  G+   PG P   G    + +  PP P G+    P G           ++   G  G 
Sbjct: 895  GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 941

Query: 76   VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
             G   P   P  Q L    G+    G  G   PP       P GL   P   G+ G   G
Sbjct: 942  RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 998

Query: 129  ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
                G   P+G       G  G  G +  A  G  +G   + G        G     G +
Sbjct: 999  PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 1053

Query: 178  GAVGPAGQHRARLGAAVLRGTAGAP 202
            G +GP G+   + G   L G AG P
Sbjct: 1054 GPIGPTGRDGVQ-GPVGLPGPAGPP 1077


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 62/208 (29%), Positives = 80/208 (38%), Gaps = 25/208 (12%)

Query: 4   TLLLTVTVPRAAGSAGQRRAPGLP-RSSGPAWAESRARP----PRPRGLEPRHPPGSPAL 58
           TL     +P  +    Q R P L  R + P     +  P    P   GL PR PPG+P  
Sbjct: 63  TLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPP 122

Query: 59  RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT-LGHGRVGRRDP--PPLGLLV 115
           R   RT +    G+      A   + P G+  A +RGR     GR  RR P  PP  LL 
Sbjct: 123 R-CPRTLAPGPRGLFPAPPPAPARTGPAGK-AAADRGRPGPAAGRRVRRSPSFPPF-LLA 179

Query: 116 NPRVAGVDGLDRGGRLDPAGIGQVL---GLGVLGGAGRQRRALGGQALGLLAQVGIGAGH 172
             R+         GR  P  +  +L   G   LGG  R++ A G    G  A+ G G G 
Sbjct: 180 QTRL---------GRTGPLALCLLLLLHGAMRLGGGSREKLACG--RAGRAARTGRGEGG 228

Query: 173 ARGGRGAVGPAGQHRARLGAAVLRGTAG 200
            R    A G   + R      + R   G
Sbjct: 229 RRAEEEAAGRRRRRRPGRTRGIPRAAGG 256



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 14/117 (11%)

Query: 170 AGHARGGRGAVGPAGQHRAR--------LGAAVLRGTAGAPARRVGVVAERAASAACSLQ 221
           AG A   RG  GPA   R R        L A    G  G P     ++    A       
Sbjct: 149 AGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTG-PLALCLLLLLHGAMRLGGGS 207

Query: 222 RQRLHARRRVREQRGRVAREVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRR 278
           R++L   R      GR AR  RG    R  E      RR +P   RG  R  G L R
Sbjct: 208 REKLACGRA-----GRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSR 259


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 64/215 (29%), Positives = 84/215 (39%), Gaps = 33/215 (15%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHP-----PGSPALRPTDRTCS 66
            P   G  GQ  APG+P   G    +     P P+G  P H      PG P  R       
Sbjct: 850  PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKG-PPGHQGKDGRPGHPGQR------- 901

Query: 67   SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL 125
                G  G  G   P  V LG      +G+T   G +G R PP P G      + G++G 
Sbjct: 902  -GELGFQGQTGPPGPAGV-LG-----PQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGR 954

Query: 126  DRG-GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGA 179
            +   G L P G +G+    G+ G  G +         GL    G    +GA  + G RG 
Sbjct: 955  EGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGP 1014

Query: 180  VGPAGQHRARLGAAVLRGTAG--APARRVGVVAER 212
            +GPAG     +G     G+ G   PA + G   ER
Sbjct: 1015 LGPAG----GIGLPGQSGSEGPVGPAGKKGSRGER 1045



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 11   VPRAAGSAGQRRAPGLPRSSGPAWAESR-ARPPRP-----RGLEPRHPPGSPA--LRPTD 62
            +P   G  G +  PG P   GP   + +  RP  P      G + +  P  PA  L P  
Sbjct: 864  IPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQG 923

Query: 63   RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGV 122
            +T      G  G  G   P   P  Q L    GR    G +G   P PLG      + G 
Sbjct: 924  KTGEVGPLGERGPPG---PPGPPGEQGLPGLEGREGAKGELG--PPGPLGKEGPAGLRGF 978

Query: 123  DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
             G  +GG  DP   G     G  G  G       G+   L    GIG     G  G VGP
Sbjct: 979  PG-PKGGPGDPGPTGLKGDKGPPGPVG--ANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035

Query: 183  AGQHRAR 189
            AG+  +R
Sbjct: 1036 AGKKGSR 1042



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 12  PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSA 70
           P   G  G+    GLP   G    E    P  PRGL+ P  PPG   +    R  +  + 
Sbjct: 481 PGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPG--RVGKMGRPGADGAR 538

Query: 71  GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGR 130
           G+ G  G            L  E+G+    G VG+  PP           G DG +RG  
Sbjct: 539 GLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPP-----------GEDG-ERGAE 586

Query: 131 LDPAGIGQVLGLGVLGGAGRQRRALGGQ-ALGLLAQVGI-GAGHARGGRGAVGPAGQ 185
             P   GQ        G    R  LG + + G   + G+ G   A G +G VGP G+
Sbjct: 587 GPPGPTGQ-------AGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGE 636



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 66/225 (29%), Positives = 85/225 (37%), Gaps = 43/225 (19%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSP----ALRPTDR 63
            P   G++G+  APG P   GP+    R      +G +    P  PPG      A  P  R
Sbjct: 1294 PGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGR 1353

Query: 64   TCSSSSAGVGGGVGG----AQPGSV----PLG-QHLALERGRT-----LGH-GRVGRRDP 108
                   G+ G VG       PG +    PLG   L   +G T      GH G +G   P
Sbjct: 1354 VGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGP 1413

Query: 109  P-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG 167
            P   G   +  + GV G   G + DP   G +  LG  G  G           G L Q G
Sbjct: 1414 PGEAGEKGDQGLPGVQG-PPGPKGDPGPPGPIGSLGHPGPPG---------VAGPLGQKG 1463

Query: 168  IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
                 ++G  G++GP G      G A   G  GAPA   G+   R
Sbjct: 1464 -----SKGSPGSMGPRGD----TGPAGPPGPPGAPAELHGLRRRR 1499



 Score = 33.5 bits (75), Expect = 0.34
 Identities = 61/225 (27%), Positives = 75/225 (33%), Gaps = 42/225 (18%)

Query: 9   VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRT 64
           +  P   G  G    PGLP S GP        P   +G +       PPG P  R    T
Sbjct: 658 IGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGT 717

Query: 65  CSSSS-------------AGVGGGVG----GAQPGSV-PLGQHLALERGRTLGHGRVGRR 106
             +                G  G VG      +PG+  P G+      G     G+ G  
Sbjct: 718 SGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGED--GPEGPKGQAGQAGEE 775

Query: 107 DPPPLGLLVNPRVAGVDGL-DRGGRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLA 164
            PP  G        GV GL    GR  P G IG    LG +G  G+          G   
Sbjct: 776 GPP--GSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKS---------GKTG 824

Query: 165 QVGI----GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
           Q G+    G   +RG RG  G  GQ   + G     G  G P  +
Sbjct: 825 QPGLEGERGPPGSRGERGQPGATGQPGPK-GDVGQDGAPGIPGEK 868



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 63/227 (27%), Positives = 74/227 (32%), Gaps = 57/227 (25%)

Query: 25  GLPRSSGPAWAESRARPPRPRGL--EP-----------------RHPPGSPALRPTDRTC 65
           G P + GP      + PP P G   +P                 R PPG+  + P     
Sbjct: 392 GPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAG 451

Query: 66  SS----------------------SSAGVGGGVG-GAQPGSVPLGQHLAL--ERGRTLGH 100
            S                      S  G  G VG   +PG V L  H  L  E G     
Sbjct: 452 GSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQ 511

Query: 101 GRVGRRDP--PP--LGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALG 156
           G  G + P  PP  +G +  P   G  GL   G   P G     GL  L G   QR   G
Sbjct: 512 GPRGLQGPHGPPGRVGKMGRPGADGARGLP--GDTGPKGDRGFDGLPGLPGEKGQRGDFG 569

Query: 157 GQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
                 + Q G  G    RG  G  GP GQ     G   L G  G+P
Sbjct: 570 H-----VGQPGPPGEDGERGAEGPPGPTGQ-AGEPGPRGLLGPRGSP 610


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
            G  G+    GLP SSG      R     PRG       +  R  PG+P          S 
Sbjct: 1907 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 1959

Query: 69   SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
              G  G  G   P  VP    +    G T  +G  GRR PP                  G
Sbjct: 1960 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 2001

Query: 129  GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
             + +  G GQ    G  G  G Q  A      GL+ + GI     RG  GA G  G+ R 
Sbjct: 2002 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 2058

Query: 189  RLGAAVLRGTAGAPARRVGV 208
            R G    +G  G P  + G+
Sbjct: 2059 RTGPLGRKGEPGEPGPKGGI 2078



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
            P A G+ G    PG     G   A+  A P  P GL        P              G
Sbjct: 2000 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 2046

Query: 72   VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
             GG  G   PG          ERGRT   GR G   +P P G + N  PR      G DG
Sbjct: 2047 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 2094

Query: 125  LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
            +   GR    G     G  G  G  G     L G           G    RG RG  GP 
Sbjct: 2095 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 2143

Query: 184  G 184
            G
Sbjct: 2144 G 2144


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
            G  G+    GLP SSG      R     PRG       +  R  PG+P          S 
Sbjct: 2113 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 2165

Query: 69   SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
              G  G  G   P  VP    +    G T  +G  GRR PP                  G
Sbjct: 2166 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 2207

Query: 129  GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
             + +  G GQ    G  G  G Q  A      GL+ + GI     RG  GA G  G+ R 
Sbjct: 2208 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 2264

Query: 189  RLGAAVLRGTAGAPARRVGV 208
            R G    +G  G P  + G+
Sbjct: 2265 RTGPLGRKGEPGEPGPKGGI 2284



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
            P A G+ G    PG     G   A+  A P  P GL        P              G
Sbjct: 2206 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 2252

Query: 72   VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
             GG  G   PG          ERGRT   GR G   +P P G + N  PR      G DG
Sbjct: 2253 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 2300

Query: 125  LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
            +   GR    G     G  G  G  G     L G           G    RG RG  GP 
Sbjct: 2301 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 2349

Query: 184  G 184
            G
Sbjct: 2350 G 2350


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)

Query: 16   GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
            G  G+    GLP SSG      R     PRG       +  R  PG+P          S 
Sbjct: 1506 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 1558

Query: 69   SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
              G  G  G   P  VP    +    G T  +G  GRR PP                  G
Sbjct: 1559 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 1600

Query: 129  GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
             + +  G GQ    G  G  G Q  A      GL+ + GI     RG  GA G  G+ R 
Sbjct: 1601 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 1657

Query: 189  RLGAAVLRGTAGAPARRVGV 208
            R G    +G  G P  + G+
Sbjct: 1658 RTGPLGRKGEPGEPGPKGGI 1677



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)

Query: 12   PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
            P A G+ G    PG     G   A+  A P  P GL        P              G
Sbjct: 1599 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 1645

Query: 72   VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
             GG  G   PG          ERGRT   GR G   +P P G + N  PR      G DG
Sbjct: 1646 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 1693

Query: 125  LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
            +   GR    G     G  G  G  G     L G           G    RG RG  GP 
Sbjct: 1694 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 1742

Query: 184  G 184
            G
Sbjct: 1743 G 1743


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 73/229 (31%), Positives = 86/229 (37%), Gaps = 55/229 (24%)

Query: 10  TVPRAAGSAGQR--RAPGLPRSSG-----------------PAWAESRARPPRPRGLEPR 50
           T PR  GS G R    P LP+ +                  P  AE  +R PR R    R
Sbjct: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAAR 241

Query: 51  HPPGSPALRPTDRTCSSSSAG-VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
            PP +P      R   S +AG  G G  G +  + P          R  G G  G R+P 
Sbjct: 242 PPP-APGPGALSRASRSRAAGRPGPGFHGGEKAAAP----------RAPGGG--GGRNPG 288

Query: 110 PLGLLVNPRVAGVD--GLD-------RGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGG 157
            LG    P  A  D  GL        R G  D AG  Q     G G      R+RR  GG
Sbjct: 289 ALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGG 348

Query: 158 QALGLLAQVGIGAG-HARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
                    G G G HA  G  A  P  +H   +GAAVLR  +G  +RR
Sbjct: 349 G--------GEGEGTHATHGP-ASPPGRRHDEEVGAAVLRAGSGEGSRR 388


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 42  PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
           P PRG  P   P   G  A   L+PT    DR C     G GGG GGA+ G+   G+   
Sbjct: 14  PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73

Query: 91  ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
             E GR  G  R  + +P P     +   A  D L  G   +PA  G+    G    + R
Sbjct: 74  RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133

Query: 151 QRRALGGQALGLLAQVG 167
           +     G+  G  +  G
Sbjct: 134 ESERAPGRGPGARSSAG 150


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 10  TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
           T PR  GS G     G P+S  P   E+ A  P+P    P   P +   R   R  + S 
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236

Query: 70  AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
                G G AQP  +PL    H        L  GR      GRR  P             
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291

Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
            GL RG   D AG  Q     G G      R+RR  GG         G G G HA  G  
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341

Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
           A  P  +H   +GAAVLR  +G  +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 42  PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
           P PRG  P   P   G  A   L+PT    DR C     G GGG GGA+ G+   G+   
Sbjct: 14  PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73

Query: 91  ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
             E GR  G  R  + +P P     +   A  D L  G   +PA  G+    G    + R
Sbjct: 74  RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133

Query: 151 QRRALGGQALGLLAQVG 167
           +     G+  G  +  G
Sbjct: 134 ESERAPGRGPGARSSAG 150


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 10  TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
           T PR  GS G     G P+S  P   E+ A  P+P    P   P +   R   R  + S 
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236

Query: 70  AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
                G G AQP  +PL    H        L  GR      GRR  P             
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291

Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
            GL RG   D AG  Q     G G      R+RR  GG         G G G HA  G  
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341

Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
           A  P  +H   +GAAVLR  +G  +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 10  TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
           T PR  GS G     G P+S  P   E+ A  P+P    P   P +   R   R  + S 
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236

Query: 70  AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
                G G AQP  +PL    H        L  GR      GRR  P             
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291

Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
            GL RG   D AG  Q     G G      R+RR  GG         G G G HA  G  
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341

Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
           A  P  +H   +GAAVLR  +G  +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368


>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 95/342 (27%), Positives = 114/342 (33%), Gaps = 43/342 (12%)

Query: 26  LPRSSGPAWAESRARP---PRPRGLEPRHPPG--SPALRPTDRTCSSSSAGVGGGVGGAQ 80
           L   +GP  A SR  P   P      PR PP   +P LRP          G  G V    
Sbjct: 4   LSPGTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPA 63

Query: 81  PGSVPLGQHLALERGRT----LGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGI 136
             ++ L   LAL  GR     LG GR  R  PP   LLV   +  +       R+D   +
Sbjct: 64  ARALALALALALAAGRRLLAGLGLGR-PRSRPPGRALLVVVLLVVLGPGSVPRRVDQVHL 122

Query: 137 GQVLGLGVLGGAGRQRRALGGQA-----------LGLLAQVGIGAGHARGGRGAVGPAGQ 185
            Q LGL     A   RR     A           L LL    +G     G R  V P  Q
Sbjct: 123 -QHLGLQPAPRAAAARREQPADATLISDLREVFILKLLQADVMGEPELWGRRSDVQP--Q 179

Query: 186 HRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGR 245
            R   G    RG  G P++        + +      R     RRR+R +R R  R     
Sbjct: 180 ERGGGG----RG-RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAA 234

Query: 246 VIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRP------------ 293
             G G       G     A   G AR     R + P GV  A  R RP            
Sbjct: 235 EFGLGGRTCVWQGAAQHRARPAGLARA-PRARPRDPAGVSRAPPRPRPHPASPAPGDGAL 293

Query: 294 -GARARARVEAGLGVVAHELVLQERAGHGVAGPGHDLRARRV 334
            GA A A    GL     +  +      G A P  +L A  V
Sbjct: 294 RGAEATAPAALGLVQPRPKSDIDSPPPRGRAAPSKELEAPSV 335


>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 95/342 (27%), Positives = 114/342 (33%), Gaps = 43/342 (12%)

Query: 26  LPRSSGPAWAESRARP---PRPRGLEPRHPPG--SPALRPTDRTCSSSSAGVGGGVGGAQ 80
           L   +GP  A SR  P   P      PR PP   +P LRP          G  G V    
Sbjct: 4   LSPGTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPA 63

Query: 81  PGSVPLGQHLALERGRT----LGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGI 136
             ++ L   LAL  GR     LG GR  R  PP   LLV   +  +       R+D   +
Sbjct: 64  ARALALALALALAAGRRLLAGLGLGR-PRSRPPGRALLVVVLLVVLGPGSVPRRVDQVHL 122

Query: 137 GQVLGLGVLGGAGRQRRALGGQA-----------LGLLAQVGIGAGHARGGRGAVGPAGQ 185
            Q LGL     A   RR     A           L LL    +G     G R  V P  Q
Sbjct: 123 -QHLGLQPAPRAAAARREQPADATLISDLREVFILKLLQADVMGEPELWGRRSDVQP--Q 179

Query: 186 HRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGR 245
            R   G    RG  G P++        + +      R     RRR+R +R R  R     
Sbjct: 180 ERGGGG----RG-RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAA 234

Query: 246 VIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRP------------ 293
             G G       G     A   G AR     R + P GV  A  R RP            
Sbjct: 235 EFGLGGRTCVWQGAAQHRARPAGLARA-PRARPRDPAGVSRAPPRPRPHPASPAPGDGAL 293

Query: 294 -GARARARVEAGLGVVAHELVLQERAGHGVAGPGHDLRARRV 334
            GA A A    GL     +  +      G A P  +L A  V
Sbjct: 294 RGAEATAPAALGLVQPRPKSDIDSPPPRGRAAPSKELEAPSV 335


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,496,052
Number of Sequences: 37866
Number of extensions: 1119880
Number of successful extensions: 9333
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 568
Number of HSP's that attempted gapping in prelim test: 6834
Number of HSP's gapped (non-prelim): 2188
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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