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Search of human proteins with 169164783
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 790 0.0
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 790 0.0
gi|48762934 alpha 2 type I collagen [Homo sapiens] 52 1e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 8e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 49 1e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 49 1e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 48 2e-05
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 48 2e-05
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 48 2e-05
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 48 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 2e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 47 2e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 47 2e-05
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 47 3e-05
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 47 4e-05
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 47 4e-05
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 47 4e-05
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 46 5e-05
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 46 5e-05
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 46 5e-05
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 790 bits (2039), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP
Sbjct: 1 MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
Query: 61 TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA
Sbjct: 61 TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
Query: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV
Sbjct: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR
Sbjct: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
Query: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR
Sbjct: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
Query: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK
Sbjct: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
Query: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV
Sbjct: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 790 bits (2039), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP
Sbjct: 1 MTPTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRP 60
Query: 61 TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA
Sbjct: 61 TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
Query: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV
Sbjct: 121 GVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAV 180
Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR
Sbjct: 181 GPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAR 240
Query: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR
Sbjct: 241 EVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARAR 300
Query: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK
Sbjct: 301 VEAGLGVVAHELVLQERAGHGVAGPGHDLRARRVVGRGGQAVHVTAGVDPAGLFQKPLGK 360
Query: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV
Sbjct: 361 SRARSNHERLAFTRVLEPEVCCWKPPKYLVSIVSPV 396
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 51.6 bits (122), Expect = 1e-06
Identities = 68/226 (30%), Positives = 78/226 (34%), Gaps = 37/226 (16%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALR-------PTDRT 64
G AG R G P +G A R PP P G+ P P G LR P RT
Sbjct: 772 GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRT 831
Query: 65 CS---------SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-GLL 114
+ G G G A P P Q L G G G R P + G +
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAV 891
Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG------- 167
P G+ G G R P +G G G AGR G Q G
Sbjct: 892 GEPGPLGIAG-PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGY 950
Query: 168 ------IGAGHARGGRGAVGPAGQH--RARLGAAVLRGTAGAPARR 205
+GA A G G VGPAG+H R G + G AGA R
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996
Score = 45.8 bits (107), Expect = 7e-05
Identities = 65/213 (30%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPA---WAESRARPPRPRGL--EP-------RHPPGSPAL 58
+P AG G+R PG ++GP + + PP P G EP P P+
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640
Query: 59 RPTDRTCSSSSAGVGGGVG-GAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
P +R +AG+ GG G +PG RG GR G R P G + P
Sbjct: 641 LPGER----GAAGIPGGKGEKGEPGL----------RGEIGNPGRDGARGAP--GAVGAP 684
Query: 118 RVAGVDGLDRG--GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHAR 174
AG G DRG G PAG G G G + G G G A+
Sbjct: 685 GPAGATG-DRGEAGAAGPAG-----PAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAK 738
Query: 175 GGRGAVGPAGQH-----RARLGAAVLRGTAGAP 202
G RGA GP G++ +GAA G G P
Sbjct: 739 GERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP 771
Score = 44.7 bits (104), Expect = 1e-04
Identities = 58/198 (29%), Positives = 70/198 (35%), Gaps = 23/198 (11%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G A G P G + PP P G + P PA G+
Sbjct: 521 APGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPA----GEVGKPGERGLH 576
Query: 74 GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVDGLDRGG 129
G G P + E G G +G R P P G P V G G G
Sbjct: 577 GEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVG--TAG 634
Query: 130 RLDPAGI-GQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGAVGPAG 184
P+G+ G+ G+ GG G + GL ++G GA A G GA GPAG
Sbjct: 635 PSGPSGLPGERGAAGIPGGKGEKGEP------GLRGEIGNPGRDGARGAPGAVGAPGPAG 688
Query: 185 Q--HRARLGAAVLRGTAG 200
R GAA G AG
Sbjct: 689 ATGDRGEAGAAGPAGPAG 706
Score = 44.3 bits (103), Expect = 2e-04
Identities = 65/204 (31%), Positives = 78/204 (38%), Gaps = 27/204 (13%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P G G PG P +GPA A A PP G E H PG P RP +R
Sbjct: 108 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG-EDGH-PGKPG-RPGERGVVGPQGA 164
Query: 72 VGGGVGGAQPGSVPLGQHLALE--RGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL--DR 127
G PG + H L+ +G+ G G +P G P G GL +R
Sbjct: 165 RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKG--EPGAPGENGTPGQTGARGLPGER 222
Query: 128 G--GRLDPAG-------IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRG 178
G G PAG +G V G +G AG G A G ++G A G G
Sbjct: 223 GRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPP--GFPG-APGPKGEIG-----AVGNAG 274
Query: 179 AVGPAGQHRARLGAAVLRGTAGAP 202
GPAG R +G L G G P
Sbjct: 275 PAGPAGP-RGEVGLPGLSGPVGPP 297
Score = 44.3 bits (103), Expect = 2e-04
Identities = 62/192 (32%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
AAG G APGLP G A RGL G P P S + G
Sbjct: 311 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL-----VGEPG--PAGSKGESGNKGEP 363
Query: 74 GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD-RGGRL 131
G G P P G E G+ +G G PP P GL +P G+ G D R G +
Sbjct: 364 GSAGPQGPPG-PSG-----EEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVM 417
Query: 132 DPAGIGQVLG-LGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARL 190
P G G GV G G R G+ GL+ G+ G G +GPAG+
Sbjct: 418 GPPGSRGASGPAGVRGPNGDAGRP--GEP-GLMGPRGL-----PGSPGNIGPAGKE---- 465
Query: 191 GAAVLRGTAGAP 202
G L G G P
Sbjct: 466 GPVGLPGIDGRP 477
Score = 41.2 bits (95), Expect = 0.002
Identities = 62/208 (29%), Positives = 77/208 (37%), Gaps = 30/208 (14%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRA-RPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
+P G+AG A GL GPA ++ + P P+ PPG
Sbjct: 329 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSG--------EEGK 380
Query: 70 AGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD-RG 128
G G G A P P + RG GR G PP P AGV G +
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGP--AGVRGPNGDA 438
Query: 129 GRLDPAGIGQVLGL----GVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAV-- 180
GR G+ GL G +G AG++ G L G+ + G IG ARG G +
Sbjct: 439 GRPGEPGLMGPRGLPGSPGNIGPAGKE----GPVGLPGIDGRPGPIGPAGARGEPGNIGF 494
Query: 181 ----GPAGQ--HRARLGAAVLRGTAGAP 202
GP G G A L G GAP
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGAP 522
Score = 41.2 bits (95), Expect = 0.002
Identities = 66/213 (30%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAE----SRARPPRPRGLEPRHPPGSPA-LRPTDRTC 65
+P A G AG PG +SGPA RP P + PR PGSP + P +
Sbjct: 407 LPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEG 466
Query: 66 SSSSAGVGG-----GVGGA--QPGSV----PLGQHLALERGRTLGH-GRVGRRDPP-PLG 112
G+ G G GA +PG++ P G + GH G G R P P G
Sbjct: 467 PVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDG 526
Query: 113 LLVNPRVAGVDGLDRG-GRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-G 169
G G+ G G P G GL G G AG + G+ GL + G+ G
Sbjct: 527 NNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKP--GER-GLHGEFGLPG 583
Query: 170 AGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
RG RG G +G G RG +G P
Sbjct: 584 PAGPRGERGPPGESGA-AGPTGPIGSRGPSGPP 615
Score = 38.9 bits (89), Expect = 0.008
Identities = 66/225 (29%), Positives = 78/225 (34%), Gaps = 38/225 (16%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P +AG G G GP A PP P GL R PGS L D + G
Sbjct: 363 PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGL--RGSPGSRGLPGADG--RAGVMG 418
Query: 72 VGGGVGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGV 122
G G + P V P G + GR G +G R P P G + G+
Sbjct: 419 PPGSRGASGPAGVRGPNG-----DAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGI 473
Query: 123 DGL-----DRGGRLDPAGIGQVLGLGVLGGAGRQ----------RRALGGQALGLLAQVG 167
DG G R +P IG G G G+ R G AQ
Sbjct: 474 DGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGP 533
Query: 168 IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
G +GG+G GP G G L G +G PA VG ER
Sbjct: 534 PGPQGVQGGKGEQGPPGPP----GFQGLPGPSG-PAGEVGKPGER 573
Score = 38.9 bits (89), Expect = 0.008
Identities = 66/231 (28%), Positives = 80/231 (34%), Gaps = 39/231 (16%)
Query: 9 VTVPRAAGSAGQRRAPGLPRSSGPA------WAESRARPPRPRGLE-PRHPPGSPALR-- 59
V P AG+ G R G +GPA P P G P G P +
Sbjct: 681 VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Query: 60 -----PTDRTCSSSSAGVGGGVGGAQPGSVP---LGQHLALERGRTLGHGRVGRRDPP-P 110
P G G G A P P + G T G GR PP P
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800
Query: 111 LGLL---VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAG-RQRRALGGQA------- 159
G+ P AG +GL RG R D +G+ +G +G G + G+A
Sbjct: 801 SGISGPPGPPGPAGKEGL-RGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG 859
Query: 160 ----LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
GLL GI G +RG RG G AG +G G AG P R
Sbjct: 860 TPGPQGLLGAPGILGLPGSRGERGLPGVAG----AVGEPGPLGIAGPPGAR 906
Score = 38.5 bits (88), Expect = 0.011
Identities = 82/298 (27%), Positives = 95/298 (31%), Gaps = 57/298 (19%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G+R PG P G + PP P G PPG P G+GG
Sbjct: 39 GPRGERGPPGPPGRDG---EDGPTGPPGPPG-----PPGPP--------------GLGGN 76
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD--RGGRLDP 133
G +G LG G +G P P AG G +G +P
Sbjct: 77 FAAQYDG-----------KGVGLGPGPMGLMGPRG-----PPGAAGAPGPQGFQGPAGEP 120
Query: 134 AGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGAVGPAGQH--R 187
GQ G G AG +A G + G +G ARG G G G R
Sbjct: 121 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR 180
Query: 188 ARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGRVI 247
G L+G GAP GV E A Q R + +RGRV
Sbjct: 181 GHNGLDGLKGQPGAP----GVKGEPGAPGENGTPGQT--GARGLPGERGRVGAPGPAGAR 234
Query: 248 GRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRPGARARARVEAGL 305
G V PV PA G A G P G A P A R E GL
Sbjct: 235 GSDGSVGPV-----GPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGL 287
Score = 35.8 bits (81), Expect = 0.069
Identities = 61/179 (34%), Positives = 69/179 (38%), Gaps = 30/179 (16%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P G G + G P + GP A A P P G P P G R T S G
Sbjct: 936 PGRDGQPGHKGERGYPGNIGPVGA---AGAPGPHG--PVGPAGKHGNR--GETGPSGPVG 988
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL----GLLVNPRVAGVDGLDR 127
G VG P S P G RG G G R P L GL P +AG G D+
Sbjct: 989 PAGAVGPRGP-SGPQG-----IRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHG-DQ 1041
Query: 128 G--GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
G G + PAG G G AG+ R G G + GI RG +G GPAG
Sbjct: 1042 GAPGSVGPAGPRGPAGPS--GPAGKDGRT--GHP-GTVGPAGI-----RGPQGHQGPAG 1090
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 50.8 bits (120), Expect = 2e-06
Identities = 64/217 (29%), Positives = 77/217 (35%), Gaps = 21/217 (9%)
Query: 16 GSAGQRRAPGLPRSSGPAWA---ESRARPPRPRGL-----EPRHPPGSPALRPTDRTCSS 67
G G+ APGLP +GP + PP P G + P G
Sbjct: 777 GDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVG----RRDPPPLGLLVNPRVAGVD 123
GV G GG+ P P Q + ERG G G G R P P G NP G
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896
Query: 124 GL-DRGGRLDPAGIGQVLG----LGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGR 177
G + G PAG G G G AG+ A G G +G G R
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956
Query: 178 GAVGPAGQ--HRARLGAAVLRGTAGAPARRVGVVAER 212
G GP G R G ++G +G P G+ ER
Sbjct: 957 GLAGPPGMPGPRGSPGPQGVKGESGKPGAN-GLSGER 992
Score = 50.4 bits (119), Expect = 3e-06
Identities = 65/208 (31%), Positives = 76/208 (36%), Gaps = 21/208 (10%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPTDRTCSSSS 69
+P + G G PG P S G + R PP P G PR PG P +
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGES---GRPGPPGPSG--PRGQPGVMGFPGPKGNDGAPGK 592
Query: 70 AGVGGGVGGAQPGSVPLGQHLAL----ERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDG 124
G GG GG P P G++ G T G G PP P GL P G G
Sbjct: 593 NGERGGPGGPGPQGPP-GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Query: 125 LDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQALGLLAQVGIGAGHARGGRGAV 180
+ G +P G G GG G R G A + G G GG+GA
Sbjct: 652 -ENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAA 710
Query: 181 GPAGQHRARLGAAVLRGTAGAPARRVGV 208
GP G GAA G G P R G+
Sbjct: 711 GPPGPP----GAAGTPGLQGMPGERGGL 734
Score = 49.7 bits (117), Expect = 5e-06
Identities = 70/242 (28%), Positives = 88/242 (36%), Gaps = 45/242 (18%)
Query: 12 PRAAGSAGQRRAPGLPRSSG------PAWAESRARPPRPRGLE----------------- 48
P AAG G R PG P S+G P+ + + PP P G
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ 928
Query: 49 --------PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGH 100
+ PPG+P P + + G+ G G P P Q + E G+ +
Sbjct: 929 PGEKGSPGAQGPPGAPG--PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGAN 986
Query: 101 GRVGRRDPP-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
G G R PP P GL P +AG G + G +P G G GG G + A
Sbjct: 987 GLSGERGPPGPQGL---PGLAGTAG-EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042
Query: 160 LGLLAQVG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAG--APARRVGVVAERA 213
G G +G G RG GPAG A G A RG G P G ER
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP-GPAGSRGAPGPQGPRGDKGETGERG 1101
Query: 214 AS 215
A+
Sbjct: 1102 AA 1103
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/191 (30%), Positives = 69/191 (36%), Gaps = 21/191 (10%)
Query: 15 AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
AGS G APG GP PP P G+ P G + P + G G
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGIN-GSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVG-RRDPPPLGLLVNPRVAGVDGLDRGGRLDP 133
G A P + A E G+ G G R + G+ P G DG D G +P
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD-GSPGEP 473
Query: 134 AGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAA 193
G L GA +R A G + G G G GPAG+ R G A
Sbjct: 474 GANG-------LPGAAGERGAPGFR----------GPAGPNGIPGEKGPAGE-RGAPGPA 515
Query: 194 VLRGTAGAPAR 204
RG AG P R
Sbjct: 516 GPRGAAGEPGR 526
Score = 44.7 bits (104), Expect = 1e-04
Identities = 67/218 (30%), Positives = 76/218 (34%), Gaps = 42/218 (19%)
Query: 16 GSAGQRRAPG---------LPRSSGPAWAESRARPPRPRGL--EPRHP--PGSPALRPTD 62
G+AG+R APG +P GPA P PRG EP PG P +R
Sbjct: 480 GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR--- 536
Query: 63 RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGV 122
G+ G GG P E GR G G R P G++ P G
Sbjct: 537 --------GMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP--GVMGFPGPKGN 586
Query: 123 DGL--DRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--------ALGLLAQVGI 168
DG G R P G G G G G Q GG GL G
Sbjct: 587 DGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT 646
Query: 169 GAGHARGGR-GAVGPAGQHRARLGAAVLRGTAGAPARR 205
G G+ G GP G A GA +G AGAP R
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAP-GAPGGKGDAGAPGER 683
Score = 40.8 bits (94), Expect = 0.002
Identities = 56/203 (27%), Positives = 73/203 (35%), Gaps = 25/203 (12%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALR--PTDRTCSSSS 69
P G++G +PG P GP +A P P G P PA + + R
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGE 241
Query: 70 AGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGG 129
G+ G G P +P + RG +G G P GL + G +G G
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP--GLKGENGLPGENGAP--G 297
Query: 130 RLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGRGAVGP 182
+ P G G L GA R G A G Q G G + G +G VGP
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDG--ARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355
Query: 183 AGQHRARLGAAVLRGTAGAPARR 205
AG G+ GAP +R
Sbjct: 356 AGS----------PGSNGAPGQR 368
Score = 38.1 bits (87), Expect = 0.014
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 34/199 (17%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G+ G P +GP + PP P+GL+ G P + G G
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP-------PGENGKPGEPGP 661
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV---AGVDGLDRG-GRL 131
G A P G+ A G G R PP GL P + AG G + G G
Sbjct: 662 KGDAGAPGAPGGKGDA---------GAPGERGPP--GLAGAPGLRGGAGPPGPEGGKGAA 710
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALG--------GQALGLLAQVGIGAGHARGGRGAVGPA 183
P G G L G +R LG G+ G A G RG G +GP
Sbjct: 711 GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Query: 184 GQHRARLGAAVLRGTAGAP 202
G G +G GAP
Sbjct: 771 GP----AGQPGDKGEGGAP 785
Score = 37.4 bits (85), Expect = 0.024
Identities = 60/214 (28%), Positives = 71/214 (33%), Gaps = 24/214 (11%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGV 72
A G AG PG S GP + + P GL R PPG L T
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014
Query: 73 GGGVGGAQPG--SVPLGQHLALERGRTLGHGRVGRRDPP----------------PLGLL 114
G G PG P G+ E G G G PP P G
Sbjct: 1015 NPGSDGL-PGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA 1073
Query: 115 VNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAG 171
P AG G +G R D G+ G+ G G + G Q G IG+
Sbjct: 1074 GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP 1133
Query: 172 HARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G RG VGP+G + G + G G P R
Sbjct: 1134 GPAGPRGPVGPSGP-PGKDGTSGHPGPIGPPGPR 1166
Score = 32.7 bits (73), Expect = 0.59
Identities = 40/127 (31%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 14 AAGSAGQRRAPG---LPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
AAG G R PG P S GPA + P P G PR P G P+ ++
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG--PRGPVG-----PSGPPGKDGTS 1154
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP--------LGLLVNPRVAGV 122
G G +G PG P G ERG G G+ PP G + +AG+
Sbjct: 1155 GHPGPIG--PPG--PRGNR--GERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGI 1208
Query: 123 DGLDRGG 129
G GG
Sbjct: 1209 GGEKAGG 1215
Score = 28.9 bits (63), Expect = 8.5
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
P + G AGQ+ A G P +GP + PP G P PPG R S
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR--GERGSE 1175
Query: 68 SSAGVGGGVGGAQPGSVP 85
S G G G P P
Sbjct: 1176 GSPGHPGQPGPPGPPGAP 1193
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.9 bits (115), Expect = 8e-06
Identities = 59/204 (28%), Positives = 78/204 (38%), Gaps = 21/204 (10%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGS---PALRPTDRTCSS 67
P A G+ G+ G S GP PP P G P PG+ P + +
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGI 405
Query: 68 SSA----GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR-DPPPLGLLVNPRVAGV 122
+ A G G G PG P + + E G G G + +P P+G+ P AG
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGE 465
Query: 123 DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGAVG 181
+G RG R +P G G GG G + G G+ G G RG+ G
Sbjct: 466 EG-KRGARGEPGPTGLPGPPGERGGPGSR---------GFPGADGVAGPKGPAGERGSPG 515
Query: 182 PAGQHRARLGAAVLRGTAGAPARR 205
PAG + G A G AG P +
Sbjct: 516 PAGP-KGSPGEAGRPGEAGLPGAK 538
Score = 45.4 bits (106), Expect = 9e-05
Identities = 64/211 (30%), Positives = 74/211 (35%), Gaps = 35/211 (16%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G+ G APG P + GP+ + PP P+G PG+P S G
Sbjct: 399 ANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE--PGAPG--------SKGDTGAK 448
Query: 74 GGVG--GAQPGSVPLGQHLALERGRTLGHGRVGRRD-PPPLGLLVNPRVAGVDGLDR-GG 129
G G G Q P G E G+ G G P P G P G G D G
Sbjct: 449 GEPGPVGVQGPPGPAG-----EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAG 503
Query: 130 RLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGRG 178
PAG G G G AGR A A GL G G G G
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563
Query: 179 AVGPAGQHRARLGAAVL-----RGTAGAPAR 204
GP G AR A V+ +G AG P +
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594
Score = 43.9 bits (102), Expect = 3e-04
Identities = 60/204 (29%), Positives = 72/204 (35%), Gaps = 45/204 (22%)
Query: 12 PRAAGSAGQRRAPGLPR------SSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRT 64
P G G+R A GLP +GP A+ RGL P PPG PA P D+
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPG-PAGAPGDKG 782
Query: 65 CSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDG 124
S S G PG +RG G G PP G DG
Sbjct: 783 ESGPSGPAGPTGARGAPG----------DRGEPGPPGPAGFAGPP-----------GADG 821
Query: 125 LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPA 183
G + +P G G G AG G +G +GA A+G RG+ GP
Sbjct: 822 -QPGAKGEPGDAGAKGDAGPPGPAG---------PAGPPGPIGNVGAPGAKGARGSAGPP 871
Query: 184 GQ-----HRARLGAAVLRGTAGAP 202
G R+G G AG P
Sbjct: 872 GATGFPGAAGRVGPPGPSGNAGPP 895
Score = 43.5 bits (101), Expect = 3e-04
Identities = 72/232 (31%), Positives = 87/232 (37%), Gaps = 38/232 (16%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPG--------------SPAL 58
A G+ G R + G P ++G A R PP P G P PPG PA
Sbjct: 858 APGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAG 917
Query: 59 RPTD-----RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-G 112
RP + + G G G A P Q +A +RG G+ G R P L G
Sbjct: 918 RPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 977
Query: 113 LLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALGLLA 164
P G G +RG G + P G+ G+ G G G R A G
Sbjct: 978 PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRG 1037
Query: 165 QVG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
+ G GA A G G VGPAG + G G AG PA VG V R
Sbjct: 1038 ETGPAGPPGAPGAPGAPGPVGPAG----KSGDRGETGPAG-PAGPVGPVGAR 1084
Score = 42.4 bits (98), Expect = 7e-04
Identities = 59/208 (28%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 9 VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRG----LEPRHPPGSPALRPTDRT 64
++VP G +G R PG P + GP + P G + PR PPG P D
Sbjct: 175 ISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 234
Query: 65 CSSSSAGVGGGVGGAQ-----PGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV 119
G G Q PG+ L + RG + G G D P G P
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGL-PGMKGHRGFSGLDGAKG--DAGPAGPKGEPGS 291
Query: 120 AGVDGLDRGGRLDPAGI-GQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHAR 174
G +G G++ P G+ G+ G G AG + A G G G A
Sbjct: 292 PGENGAP--GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349
Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAP 202
G +G GP G R G +RG G P
Sbjct: 350 GAKGEAGPQGP-RGSEGPQGVRGEPGPP 376
Score = 41.2 bits (95), Expect = 0.002
Identities = 62/221 (28%), Positives = 75/221 (33%), Gaps = 39/221 (17%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRA---RPPRPRG----LEPRHPPGSPALR-------PT 61
G AG+R PG P + GPA + A PP P G + P GSP + P
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652
Query: 62 DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRD-------------- 107
GV G +G P + ERG G G R
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712
Query: 108 --PPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQ 165
P G P + G+ G +RG P G G G G + GL
Sbjct: 713 GAPGAPGSQGAPGLQGMPG-ERGAAGLPGPKGDRGDAGPKGADGSPGK---DGVRGLTGP 768
Query: 166 VG----IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
+G GA +G G GPAG AR GA RG G P
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGAR-GAPGDRGEPGPP 808
Score = 41.2 bits (95), Expect = 0.002
Identities = 68/223 (30%), Positives = 82/223 (36%), Gaps = 35/223 (15%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P AG G++ PG + GP+ A P RG++ PPG R + + A
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ--GPPGPAGPRGANGAPGNDGAK 709
Query: 72 VGGGVGGAQPGS--VPLGQHLALERGRTLGHGRVG-RRDPPPLGLLVNPRVAGVDGL--- 125
G GA PGS P Q + ERG G G R D P G +P GV GL
Sbjct: 710 GDAGAPGA-PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP 768
Query: 126 -----------DRG--GRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI--- 168
D+G G PAG G G G G A G Q G
Sbjct: 769 IGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE 828
Query: 169 -GAGHARGGRGAVGPAGQ--------HRARLGAAVLRGTAGAP 202
G A+G G GPAG + GA RG+AG P
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP 871
Score = 40.4 bits (93), Expect = 0.003
Identities = 63/207 (30%), Positives = 73/207 (35%), Gaps = 21/207 (10%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSP-ALRPTDRTCSSSSA 70
P G AG+ G +GPA PP P G P GSP A P +
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG--PAGEKGSPGADGPAGAPGTPGPQ 952
Query: 71 GVGG--GVGGAQPG-----SVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRV 119
G+ G GV G PG P + E G+ G G R PP P GL P
Sbjct: 953 GIAGQRGVVGL-PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
Query: 120 AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRG 178
+G +G G P G G G G A A G G +G G RG
Sbjct: 1012 SGREGAP-GAEGSPGRDGSP---GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
GPAG +G RG AG R
Sbjct: 1068 ETGPAGP-AGPVGPVGARGPAGPQGPR 1093
Score = 36.6 bits (83), Expect = 0.041
Identities = 62/218 (28%), Positives = 77/218 (35%), Gaps = 28/218 (12%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPR-HPPGSPALRPTDRTCS-SS 68
+P A G G +PG +G PP P G + R PPG P R
Sbjct: 534 LPGAKGLTGSPGSPGPDGKTG---------PPGPAGQDGRPGPPGPPGARGQAGVMGFPG 584
Query: 69 SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVDG 124
G G G A VP G+ G G + PP P G AG G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAVGPAGK---DGEAGAQGPPGPAGPAGERGEQGPAGSPG 641
Query: 125 LDRGGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGA 179
G PAG G+ GV G G + G + G+ G G RGA
Sbjct: 642 FQ--GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699
Query: 180 VGPAGQHRAR--LGAAVLRGTAGAPARRVGVVAERAAS 215
G G A+ GA G+ GAP + G+ ER A+
Sbjct: 700 NGAPGNDGAKGDAGAPGAPGSQGAPGLQ-GMPGERGAA 736
Score = 33.5 bits (75), Expect = 0.34
Identities = 65/221 (29%), Positives = 73/221 (33%), Gaps = 45/221 (20%)
Query: 15 AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGL--------------------------- 47
AG G+ PG P GP PP P GL
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPG---PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMG 182
Query: 48 --EPRHPPGSP-ALRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVG 104
PR PG P A P G G G P P + G GR G
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG 242
Query: 105 RRDPP-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGL 162
R PP P G P AG+ G+ +G R G + G G G AG + G
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGM-KGHR----GFSGLDGAKGDAGPAGPKGEPGSPGENGA 297
Query: 163 LAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
Q+G G RG GA GPAG R GA G AG P
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGA-RGNDGAT---GAAGPP 334
Score = 31.2 bits (69), Expect = 1.7
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G +G + PG P S G + P PRG PPGS D G+ G
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRG-----PPGSAGAPGKD-----GLNGLPGP 1161
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVD 123
+G P RGRT G VG PP P AG D
Sbjct: 1162 IGPPGP------------RGRTGDAGPVGPPGPPGPPGPPGPPSAGFD 1197
Score = 28.9 bits (63), Expect = 8.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESR------ARPPRPRGLEPRHPPGSPA 57
P +AG+ G+ GLP GP R PP P G P PPG P+
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPG--PPGPPGPPS 1193
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 48.5 bits (114), Expect = 1e-05
Identities = 62/208 (29%), Positives = 76/208 (36%), Gaps = 26/208 (12%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALR-PTDRTCSSSSAGVG 73
G G R PG+P SGP + P P+G + P PPG + P G
Sbjct: 1105 GHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEA 1164
Query: 74 GGVGGAQPGSVPLGQHLALERGRTLGHGRVG----------RRDPPPLGLLVNPRVAGVD 123
G G P P Q L +RG G G R DP P G G+
Sbjct: 1165 GMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLM 1224
Query: 124 GLDRGGRLDPAGIGQVLG-LGVLGGAGRQRRALGGQALGLLAQVG----------IGAGH 172
G D G P G+ V G G G G + R A G Q+G G
Sbjct: 1225 GED--GPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPG 1282
Query: 173 ARGGRGAVGPAGQHRARLGAAVLRGTAG 200
+G RG++GP G R+GA G AG
Sbjct: 1283 PKGSRGSLGPTGA-PGRMGAQGEPGLAG 1309
Score = 44.7 bits (104), Expect = 1e-04
Identities = 65/214 (30%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 11 VPRAAGSAGQRRAPG---LPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
VP GS G PG P GP PP RG + R P P P S
Sbjct: 1022 VPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPD-GPAGEQGSR 1080
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP--PP--LGLLVNPRVAGVD 123
G G G +PG P Q +A ERG G G P PP GL P G
Sbjct: 1081 GLKGPPGPQG--RPGR-PGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQ 1137
Query: 124 G-LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG----------I 168
G + G + P G +G L G + LG GL+ Q G +
Sbjct: 1138 GPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPM 1197
Query: 169 GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
G +G RG GP G+H + G L G G P
Sbjct: 1198 GPDGLKGDRGDPGPDGEHGEK-GQEGLMGEDGPP 1230
Score = 39.7 bits (91), Expect = 0.005
Identities = 64/209 (30%), Positives = 80/209 (38%), Gaps = 44/209 (21%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHP----PGSPALRPTDRTCSSSSAG 71
G G R PG GP E PP GLE + PG P L G
Sbjct: 928 GKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGL-----------DG 976
Query: 72 VGGGVGG-AQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGR 130
V G G +PG P+G+ G +G +GL+ P + G G DR G
Sbjct: 977 VKGEPGDPGRPG--PVGE-----------QGFMGF-----IGLVGEPGIVGEKG-DR-GM 1016
Query: 131 LDPAGI----GQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-GAGHARGGRGAVGPAGQ 185
+ P G+ G + G+ GG G G G+ GA RG RG GPAG+
Sbjct: 1017 MGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGE 1076
Query: 186 HRARLGAAVLRGTAGAPAR--RVGVVAER 212
+R G G G P R + GV ER
Sbjct: 1077 QGSR-GLKGPPGPQGRPGRPGQQGVAGER 1104
Score = 33.9 bits (76), Expect = 0.26
Identities = 51/200 (25%), Positives = 68/200 (34%), Gaps = 16/200 (8%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G + PGL G PP P+G + A P G
Sbjct: 1295 APGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDR 1354
Query: 74 GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDP 133
G G P + + RG+ G+ G P P G G +G G+
Sbjct: 1355 GDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH--PGPRGWPGPKGSKGAEG--PKGKQGK 1410
Query: 134 AGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVGIGAGHARGGR----------GAVGP 182
AG G+ L G R +G Q L G+ G+ + G+ G +GP
Sbjct: 1411 AGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGP 1470
Query: 183 AGQHRARLGAAVLRGTAGAP 202
AG+ R G A L G G P
Sbjct: 1471 AGK-RGNPGVAGLPGAQGPP 1489
Score = 30.8 bits (68), Expect = 2.2
Identities = 59/214 (27%), Positives = 79/214 (36%), Gaps = 45/214 (21%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSSSSAG 71
G+ G PGL + GP + P P G P GSP + G
Sbjct: 688 GAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKG-----YPGRQG 742
Query: 72 VGGGVGGAQP----GSVPLGQHLAL-----ERGRTLGHGRVGRRDPP----------PLG 112
+ G VG P G + L L ERG G+ G+ P P G
Sbjct: 743 LPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPG 802
Query: 113 LLVNPRVAGVDGLDRGGRLDPAGIGQVLG-LGVLGGAGRQRRALGGQAL-GLLAQVG-IG 169
L NP G+ G P G+ ++G LGVLG G G + + GL+ VG G
Sbjct: 803 LDGNPGELGLPG--------PPGVPGLIGDLGVLGPIGYP----GPKGMKGLMGSVGEPG 850
Query: 170 AGHARGGRGAVGPAGQ--HRARLGAAVLRGTAGA 201
+G +G G +G + G+ L G GA
Sbjct: 851 LKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGA 884
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 48.5 bits (114), Expect = 1e-05
Identities = 63/208 (30%), Positives = 81/208 (38%), Gaps = 33/208 (15%)
Query: 15 AGSAGQRRAPGLPRSSGPAWAES---------RARPPRPRGL-EPRHPPGSPALRPTDRT 64
+G +GQ PGL SGP E + P P+GL R PPG P L+ T
Sbjct: 749 SGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGPPGPPGLKGTQ-- 806
Query: 65 CSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR-------DPPPLGLLVNP 117
G G G P P + A E G G VG + + P+GL
Sbjct: 807 ---GEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEV 863
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
+ G G ++G R P +G GV+G G LGL VG ARG
Sbjct: 864 GMTGSIG-EKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVG-----ARGPP 917
Query: 178 GAVGPAGQHRAR-----LGAAVLRGTAG 200
G+ GP GQ +R LG ++G G
Sbjct: 918 GSQGPKGQRGSRGPDGLLGEQGIQGAKG 945
Score = 34.7 bits (78), Expect = 0.15
Identities = 60/236 (25%), Positives = 80/236 (33%), Gaps = 49/236 (20%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGL-----------------------E 48
P G G PGL S GP A P P GL E
Sbjct: 668 PGLVGGTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGE 727
Query: 49 PRHP--------PGSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLG 99
P +P PG P +R + + + G+ G G P P + + G
Sbjct: 728 PGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGP 787
Query: 100 HGRVGRRDPP-PLGLLVNPRVAGVDG-LDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGG 157
G +G R PP P GL G +G + G L P G G G + +G
Sbjct: 788 KGLLGNRGPPGPPGL---KGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGD 844
Query: 158 QA----------LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
Q +GL +VG+ G+ +G RG+ GP G + G G G P
Sbjct: 845 QGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGP-QGEKGVMGYPGPPGVP 899
Score = 32.3 bits (72), Expect = 0.77
Identities = 55/190 (28%), Positives = 66/190 (34%), Gaps = 25/190 (13%)
Query: 9 VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALR----P 60
V VP G+ GQ+ PG P G + +G + P PG P L+ P
Sbjct: 1230 VGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGP 1289
Query: 61 TDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVA 120
+ G+ G G P P Q L RG G GR G P P V
Sbjct: 1290 KGIQGYHGADGISGNPGKIGP---PGKQGLPGIRG---GPGRTGLAGAPG-----PPGVK 1338
Query: 121 GVDGLDRG-GRLDPAGIGQVLGLGVLGGAGRQRRALGGQA----LGLLAQVG-IGAGHAR 174
G GL G P G + G + G R A G Q GL Q G G
Sbjct: 1339 GSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLT 1398
Query: 175 GGRGAVGPAG 184
G +G GP G
Sbjct: 1399 GFQGFPGPKG 1408
Score = 29.3 bits (64), Expect = 6.5
Identities = 51/200 (25%), Positives = 63/200 (31%), Gaps = 47/200 (23%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGL----EPRHPPGSPA----LRPTDRTCSS 67
G G++ GLP GP + P P G+ R PG + PT
Sbjct: 1074 GEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEV--- 1130
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
S G G +G + P +G G VG LGL+ G+ G R
Sbjct: 1131 GSRGPPGKIGKSGP------------KGARGTRGAVGH-----LGLMGPDGEPGIPGY-R 1172
Query: 128 GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ-- 185
G + P G G G G LG G RG GP G
Sbjct: 1173 GHQGQPGPSGLPGPKGEKGYPGEDSTVLG----------------PPGPRGEPGPVGDQG 1216
Query: 186 HRARLGAAVLRGTAGAPARR 205
R GA +G G P R
Sbjct: 1217 ERGEPGAEGYKGHVGVPGLR 1236
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 47.8 bits (112), Expect = 2e-05
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
P A G+ G R APG P G A A P P G+E PPG P +T +
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
G G G P P G H+ +G G G + PP P G L P G+
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303
Query: 124 GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
G D G + P G+ G LG G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331
Score = 44.7 bits (104), Expect = 1e-04
Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
G G R PG+P G A PP PRG L PG P LR G+ G
Sbjct: 967 GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015
Query: 75 GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
+G PGS +RG TLG GR GR P + L + G G G R
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063
Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
P G G+ G G++ G L G GA + G G G G H LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122
Query: 192 AAVLRGTAGAPARR 205
++G G P R
Sbjct: 1123 FKGIKGLLGPPGIR 1136
Score = 34.3 bits (77), Expect = 0.20
Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)
Query: 12 PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
PR A G +G PG P SS P + P R PG A+ +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
S G+ G G PG P G + +G HG G L +P + GVDG
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470
Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
L P G+ + GL GV G GRQ A + G G+ GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530
Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G +G G Q ++G G G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565
Score = 32.7 bits (73), Expect = 0.59
Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
P G+ G APG P +GP S + P P P G P PPG P P S
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679
Query: 71 GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G G P P + +G G G P G + P + G GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
G + +PA + G G G G + + +GL G+ G RG G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
GP G+ R G L G G RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832
Score = 30.8 bits (68), Expect = 2.2
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G++ PG P S G P P+G P+ PG P L T S G+
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96
Query: 74 G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G+ G + P G L G + G G P G L P + G GL
Sbjct: 97 GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
+G + PA + + L G G A G Q L G VG G A
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
G RG G G+ H+ G L G G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241
Score = 30.0 bits (66), Expect = 3.8
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
+P G G+ PG P GPA E P GL + P G P
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 58 LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
+R G+ G G P + Q G G G PP G NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
G G DRG P G+ G +G AG R G + G G+ G
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G GP G RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253
Score = 29.6 bits (65), Expect = 5.0
Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
P L T+ P G+AG + G P +++ P P P+ PG P P
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194
Query: 62 DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
G G +G P +G+ + +G G G PP
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253
Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
G + P G GL ++G DP G+ GV G G +
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313
Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GL+ + GI +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339
Score = 28.9 bits (63), Expect = 8.5
Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G PG P S GPA P P G P+ G P L+ T G G
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638
Query: 76 VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
G A P G + + + G G G + PP LG +P + G D G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
+ G P G G G LG G+ L G+ GL G A GG G G
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757
Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
G+ +G L G G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 47.8 bits (112), Expect = 2e-05
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
P A G+ G R APG P G A A P P G+E PPG P +T +
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
G G G P P G H+ +G G G + PP P G L P G+
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303
Query: 124 GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
G D G + P G+ G LG G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331
Score = 44.7 bits (104), Expect = 1e-04
Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
G G R PG+P G A PP PRG L PG P LR G+ G
Sbjct: 967 GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015
Query: 75 GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
+G PGS +RG TLG GR GR P + L + G G G R
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063
Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
P G G+ G G++ G L G GA + G G G G H LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122
Query: 192 AAVLRGTAGAPARR 205
++G G P R
Sbjct: 1123 FKGIKGLLGPPGIR 1136
Score = 34.3 bits (77), Expect = 0.20
Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)
Query: 12 PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
PR A G +G PG P SS P + P R PG A+ +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
S G+ G G PG P G + +G HG G L +P + GVDG
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470
Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
L P G+ + GL GV G GRQ A + G G+ GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530
Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G +G G Q ++G G G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565
Score = 32.7 bits (73), Expect = 0.59
Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
P G+ G APG P +GP S + P P P G P PPG P P S
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679
Query: 71 GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G G P P + +G G G P G + P + G GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
G + +PA + G G G G + + +GL G+ G RG G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
GP G+ R G L G G RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832
Score = 30.8 bits (68), Expect = 2.2
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G++ PG P S G P P+G P+ PG P L T S G+
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96
Query: 74 G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G+ G + P G L G + G G P G L P + G GL
Sbjct: 97 GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
+G + PA + + L G G A G Q L G VG G A
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
G RG G G+ H+ G L G G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241
Score = 30.0 bits (66), Expect = 3.8
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
+P G G+ PG P GPA E P GL + P G P
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 58 LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
+R G+ G G P + Q G G G PP G NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
G G DRG P G+ G +G AG R G + G G+ G
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G GP G RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253
Score = 29.6 bits (65), Expect = 5.0
Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
P L T+ P G+AG + G P +++ P P P+ PG P P
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194
Query: 62 DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
G G +G P +G+ + +G G G PP
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253
Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
G + P G GL ++G DP G+ GV G G +
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313
Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GL+ + GI +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339
Score = 29.3 bits (64), Expect = 6.5
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
P L +++P + G G PG+ GP P PRG + PG+P P
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405
Query: 62 DRTCSSSSAGVGGGVG 77
+ S G G G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421
Score = 28.9 bits (63), Expect = 8.5
Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G PG P S GPA P P G P+ G P L+ T G G
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638
Query: 76 VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
G A P G + + + G G G + PP LG +P + G D G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
+ G P G G G LG G+ L G+ GL G A GG G G
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757
Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
G+ +G L G G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 47.8 bits (112), Expect = 2e-05
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
P A G+ G R APG P G A A P P G+E PPG P +T +
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
G G G P P G H+ +G G G + PP P G L P G+
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303
Query: 124 GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
G D G + P G+ G LG G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331
Score = 44.7 bits (104), Expect = 1e-04
Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
G G R PG+P G A PP PRG L PG P LR G+ G
Sbjct: 967 GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015
Query: 75 GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
+G PGS +RG TLG GR GR P + L + G G G R
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063
Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
P G G+ G G++ G L G GA + G G G G H LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122
Query: 192 AAVLRGTAGAPARR 205
++G G P R
Sbjct: 1123 FKGIKGLLGPPGIR 1136
Score = 34.3 bits (77), Expect = 0.20
Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)
Query: 12 PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
PR A G +G PG P SS P + P R PG A+ +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
S G+ G G PG P G + +G HG G L +P + GVDG
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470
Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
L P G+ + GL GV G GRQ A + G G+ GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530
Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G +G G Q ++G G G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565
Score = 32.7 bits (73), Expect = 0.59
Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
P G+ G APG P +GP S + P P P G P PPG P P S
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679
Query: 71 GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G G P P + +G G G P G + P + G GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
G + +PA + G G G G + + +GL G+ G RG G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
GP G+ R G L G G RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832
Score = 30.8 bits (68), Expect = 2.2
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G++ PG P S G P P+G P+ PG P L T S G+
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96
Query: 74 G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G+ G + P G L G + G G P G L P + G GL
Sbjct: 97 GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
+G + PA + + L G G A G Q L G VG G A
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
G RG G G+ H+ G L G G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241
Score = 30.0 bits (66), Expect = 3.8
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
+P G G+ PG P GPA E P GL + P G P
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 58 LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
+R G+ G G P + Q G G G PP G NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
G G DRG P G+ G +G AG R G + G G+ G
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G GP G RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253
Score = 29.6 bits (65), Expect = 5.0
Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
P L T+ P G+AG + G P +++ P P P+ PG P P
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194
Query: 62 DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
G G +G P +G+ + +G G G PP
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253
Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
G + P G GL ++G DP G+ GV G G +
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313
Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GL+ + GI +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339
Score = 29.3 bits (64), Expect = 6.5
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
P L +++P + G G PG+ GP P PRG + PG+P P
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405
Query: 62 DRTCSSSSAGVGGGVG 77
+ S G G G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421
Score = 28.9 bits (63), Expect = 8.5
Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G PG P S GPA P P G P+ G P L+ T G G
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638
Query: 76 VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
G A P G + + + G G G + PP LG +P + G D G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
+ G P G G G LG G+ L G+ GL G A GG G G
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757
Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
G+ +G L G G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 47.8 bits (112), Expect = 2e-05
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEP-RHPPGSPALRPTDRTCSSSSA 70
P A G+ G R APG P G A A P P G+E PPG P +T +
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPP 1244
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVD 123
G G G P P G H+ +G G G + PP P G L P G+
Sbjct: 1245 GSRGSPGAPGPPGPP-GSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLP 1303
Query: 124 GL--DRGGRLDPAGIGQVLGLGVLGGAG 149
G D G + P G+ G LG G
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGNPGFLGSIG 1331
Score = 44.7 bits (104), Expect = 1e-04
Identities = 61/194 (31%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-LEPRHPPGSPALRPTDRTCSSSSAGVGG 74
G G R PG+P G A PP PRG L PG P LR G+ G
Sbjct: 967 GEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLR-----------GIPG 1015
Query: 75 GVGG-AQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLD 132
+G PGS +RG TLG GR GR P + L + G G G R
Sbjct: 1016 SMGNMGMPGSKG-------KRG-TLGFPGRAGRPGLPGIHGLQGDK--GEPGYSEGTR-- 1063
Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLG 191
P G G+ G G++ G L G GA + G G G G H LG
Sbjct: 1064 PGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPH-GDLG 1122
Query: 192 AAVLRGTAGAPARR 205
++G G P R
Sbjct: 1123 FKGIKGLLGPPGIR 1136
Score = 34.3 bits (77), Expect = 0.20
Identities = 59/215 (27%), Positives = 76/215 (35%), Gaps = 34/215 (15%)
Query: 12 PRAA----GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSS 67
PR A G +G PG P SS P + P R PG A+ +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
S G+ G G PG P G + +G HG G L +P + GVDG
Sbjct: 424 GSPGLPGSPG--PPG--PPGD-IVFRKGPPGDHGLP--------GYLGSPGIPGVDGPKG 470
Query: 128 GGRL---------DPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-------GA 170
L P G+ + GL GV G GRQ A + G G+ GA
Sbjct: 471 EPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGA 530
Query: 171 GHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G +G G Q ++G G G P R+
Sbjct: 531 QGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRK 565
Score = 32.7 bits (73), Expect = 0.59
Identities = 59/217 (27%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARP-PRPRGLEPRHPPGSPALRPTDRTCSSSSA 70
P G+ G APG P +GP S + P P P G P PPG P P S
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPG--PPGPPGHPG--PQGPPGIPGSL 679
Query: 71 GVGGGVGGAQPGSVPLGQHLAL-----ERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G G P P + +G G G P G + P + G GL
Sbjct: 680 GKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCP--GKMGEPGLPGKPGL 737
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGI-------GAGHARGGRG 178
G + +PA + G G G G + + +GL G+ G RG G
Sbjct: 738 P-GAKGEPA-VAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 179 AVGPAGQH----------RARLGAAVLRGTAGAPARR 205
GP G+ R G L G G RR
Sbjct: 796 QPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRR 832
Score = 30.8 bits (68), Expect = 2.2
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVG 73
A G G++ PG P S G P P+G P+ PG P L T S G+
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQG--PKGFPGLPGL-----TGSKGVRGIS 96
Query: 74 G--------GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGL 125
G G+ G + P G L G + G G P G L P + G GL
Sbjct: 97 GLPGFSGSPGLPGTPGNTGPYG--LVGVPGCSGSKGEQGFPGLP--GTLGYPGIPGAAGL 152
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQAL----GLLAQVG-------IGAGHAR 174
+G + PA + + L G G A G Q L G VG G A
Sbjct: 153 -KGQKGAPAK-EEDIELDAKGDPGLP-GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 175 GGRGAVGPAGQ----HRARLGAAVLRGTAGAP 202
G RG G G+ H+ G L G G P
Sbjct: 210 GPRGPKGHMGERVIGHKGERGVKGLTGPPGPP 241
Score = 30.0 bits (66), Expect = 3.8
Identities = 55/205 (26%), Positives = 66/205 (32%), Gaps = 39/205 (19%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPP-------------GSPA 57
+P G G+ PG P GPA E P GL + P G P
Sbjct: 1075 LPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPG 1134
Query: 58 LRPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNP 117
+R G+ G G P + Q G G G PP G NP
Sbjct: 1135 IR--------GPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPP-GPRGNP 1185
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGR 177
G G DRG P G+ G +G AG R G + G G+ G
Sbjct: 1186 GAQGAKG-DRGAPGFPGLPGR---KGAMGDAG-PRGPTGIE--GFPGPPGLPGAIIPGQT 1238
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G GP G RG+ GAP
Sbjct: 1239 GNRGPPGS----------RGSPGAP 1253
Score = 29.6 bits (65), Expect = 5.0
Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 35/211 (16%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL-RPT 61
P L T+ P G+AG + G P +++ P P P+ PG P P
Sbjct: 135 PGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPV 194
Query: 62 DRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------------ 109
G G +G P +G+ + +G G G PP
Sbjct: 195 GPPGPPGFFGFPGAMGPRGPKG-HMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDN 253
Query: 110 ---------PLGLLVNPRVAGVDGL-------DRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
G + P G GL ++G DP G+ GV G G +
Sbjct: 254 RTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSEGV 313
Query: 154 ALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GL+ + GI +G +G +GP G
Sbjct: 314 KGNRGFPGLMGEDGI-----KGQKGDIGPPG 339
Score = 29.3 bits (64), Expect = 6.5
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH-PPGSPALRPT 61
P L +++P + G G PG+ GP P PRG + PG+P P
Sbjct: 1348 PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPG--PA 1405
Query: 62 DRTCSSSSAGVGGGVG 77
+ S G G G
Sbjct: 1406 GEKGNKGSKGEPGPAG 1421
Score = 28.9 bits (63), Expect = 8.5
Identities = 58/205 (28%), Positives = 71/205 (34%), Gaps = 33/205 (16%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G PG P S GPA P P G P+ G P L+ T G G
Sbjct: 593 GDQGPPGDPGSPGSPGPAG------PAGPPGYGPQ---GEPGLQGT-----QGVPGAPGP 638
Query: 76 VGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPP----PLGLLVNPRVAGVD------G 124
G A P G + + + G G G + PP LG +P + G D G
Sbjct: 639 PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPG 698
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQ-RRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
+ G P G G G LG G+ L G+ GL G A GG G G
Sbjct: 699 IGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKP-GLPGAKGEPAVAMPGGPGTPGF 757
Query: 183 AGQ-----HRARLGAAVLRGTAGAP 202
G+ +G L G G P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTP 782
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/213 (29%), Positives = 76/213 (35%), Gaps = 40/213 (18%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P A G G R PG P + GP A A PP +G PPG + P +R + +
Sbjct: 710 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-----PPGLQGM-PGERGAAGIAGP 763
Query: 72 VG--GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL--D 126
G G VG P P G+ G G G PP P G G G
Sbjct: 764 KGDRGDVGEKGPEGAP---------GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 814
Query: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQH 186
G R P G+ G G AG GA G +G G AGQ
Sbjct: 815 AGARGAPGERGETGPPGPAGFAGPP-----------------GADGQPGAKGEQGEAGQ- 856
Query: 187 RARLGAAVLRGTAGAPARR--VGVVAERAASAA 217
+ GA +G +GAP + GV + A A
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA 889
Score = 43.5 bits (101), Expect = 3e-04
Identities = 69/216 (31%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSSSSAG 71
G G+ A G P +GPA P P G + P PPG +P D+ G
Sbjct: 633 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG-KPGDQ-------G 684
Query: 72 VGGGVGGAQPGSV-PLGQH-LALERGRTLGHGRVGRRDPP----------------PLGL 113
V G G PG V P G+ ERG G G R P P G
Sbjct: 685 VPGEAGA--PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742
Query: 114 LVNPRVAGVDGLDRG--GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG--- 167
P + G+ G +RG G P G G V G G G+ GG+ GL +G
Sbjct: 743 QGPPGLQGMPG-ERGAAGIAGPKGDRGDVGEKGPEGAPGKD----GGR--GLTGPIGPPG 795
Query: 168 -IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
GA +G G GPAG AR GA RG G P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGAR-GAPGERGETGPP 830
Score = 43.1 bits (100), Expect = 4e-04
Identities = 64/223 (28%), Positives = 74/223 (33%), Gaps = 24/223 (10%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
P G+ G+ APG+ SG P PRGL P G+ R D
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG--QP 350
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR----------DPPPLGLLVNP 117
AG G VG A P E G T G G + P P G NP
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 410
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-GAGHARG 175
G+ G G GI G G G G Q G + GI G +G
Sbjct: 411 GTDGIPGAK--GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 468
Query: 176 GRGAVGPAGQHRA--RLGAAVLRGTAGAP--ARRVGVVAERAA 214
+G GPAG A G RG G P +G ER A
Sbjct: 469 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGA 511
Score = 42.4 bits (98), Expect = 7e-04
Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 28/203 (13%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P AG G+R A G P GP P RG + P P +R S +
Sbjct: 482 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 541
Query: 72 VGGGVGGAQPG--SVPLGQHLALERGRTLGHGRV---------GRRDPP-PLGLLVNPRV 119
G +PG +P + L G G+V GR PP P G P V
Sbjct: 542 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 601
Query: 120 AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGA 179
G G +G +P G+ G+ G G R L G+ G A G G
Sbjct: 602 MGFPG-PKGANGEPGKAGE---KGLPGAPG--LRGLPGKD---------GETGAAGPPGP 646
Query: 180 VGPAGQHRARLGAAVLRGTAGAP 202
GPAG+ R GA G G P
Sbjct: 647 AGPAGE-RGEQGAPGPSGFQGLP 668
Score = 41.2 bits (95), Expect = 0.002
Identities = 61/222 (27%), Positives = 74/222 (33%), Gaps = 35/222 (15%)
Query: 11 VPRAAGSAGQ---RRAPGLPRSSGPAWAESRARPPRPRGLE------------------- 48
+P A GSAG APG P GP + P P+G
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 49 PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQP---GSVPLGQHLALERGRTLGHGRVGR 105
P P G+P P + G GGVG P P + + G G G
Sbjct: 475 PAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Query: 106 RDPP----PLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
R P P G +P G GL RG P G +G G G R
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592
Query: 160 LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAG 200
G Q G+ G +G G G AG+ + GA LRG G
Sbjct: 593 QGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG 633
Score = 38.1 bits (87), Expect = 0.014
Identities = 56/201 (27%), Positives = 74/201 (36%), Gaps = 38/201 (18%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G++ APG G PP P G PPG P L + + G
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-----PPGPPGL--GGNFAAQMAGGFDEK 190
Query: 76 VGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLD 126
GGAQ G + P+G +G R PP P G NP G G+
Sbjct: 191 AGGAQLGVMQGPMGP--------------MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 236
Query: 127 --RGGRLDPAGIGQVLGLGVLGGAGR--QRRALGGQ-ALGLLAQVGIGAGHARGGRGAVG 181
G R P G+ G G G+ +R G Q A G G+ +G RG G
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG--VKGHRGYPG 294
Query: 182 PAGQHRARLGAAVLRGTAGAP 202
G + GA ++G +G+P
Sbjct: 295 LDGA-KGEAGAPGVKGESGSP 314
Score = 38.1 bits (87), Expect = 0.014
Identities = 67/221 (30%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 9 VTVPRAA-GSAGQRRAPGLPRSSG---PAWAESRARPPRPRGLEPRHPP----------- 53
VT P+ A G+ G A G P ++G P + PP P G + P
Sbjct: 880 VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 939
Query: 54 --GSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
G P L+ P G G G P P Q LA +RG G+ G R P
Sbjct: 940 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAGQRGIVGLPGQRGERGFPG 996
Query: 111 L-GLLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALG 161
L G P G G DRG G + P G+ G+ G G G R G
Sbjct: 997 LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 1056
Query: 162 LLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
+ G +GA A G G+ GPAG G RG AGA
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGP----TGKQGDRGEAGA 1093
Score = 35.0 bits (79), Expect = 0.12
Identities = 59/196 (30%), Positives = 67/196 (34%), Gaps = 41/196 (20%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P G G PG P SGP + PR PPG P +P D AG
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGP--------------MGPRGPPGPPG-KPGD----DGEAG 258
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRL 131
G G ERG G G P L + R G GLD G
Sbjct: 259 KPGKAG---------------ERGPPGPQGARGFPGTPGLPGVKGHR--GYPGLD--GAK 299
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAVGPAGQHRAR 189
AG V G G +G + L G + G GA ARG G GPAG
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PGP 358
Query: 190 LGAAVLRGTAGAPARR 205
+G A G GAP +
Sbjct: 359 VGPAGGPGFPGAPGAK 374
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G GLP GP+ + + P P G PR PPG P + + G+ G
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSG--PRGPPG-----PVGPSGKDGANGIPGP 1183
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
+G P RGR+ G G PP
Sbjct: 1184 IGPPGP------------RGRS---GETGPAGPP 1202
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/213 (29%), Positives = 76/213 (35%), Gaps = 40/213 (18%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P A G G R PG P + GP A A PP +G PPG + P +R + +
Sbjct: 641 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-----PPGLQGM-PGERGAAGIAGP 694
Query: 72 VG--GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL--D 126
G G VG P P G+ G G G PP P G G G
Sbjct: 695 KGDRGDVGEKGPEGAP---------GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 745
Query: 127 RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQH 186
G R P G+ G G AG GA G +G G AGQ
Sbjct: 746 AGARGAPGERGETGPPGPAGFAGPP-----------------GADGQPGAKGEQGEAGQ- 787
Query: 187 RARLGAAVLRGTAGAPARR--VGVVAERAASAA 217
+ GA +G +GAP + GV + A A
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA 820
Score = 43.5 bits (101), Expect = 3e-04
Identities = 69/216 (31%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSSSSAG 71
G G+ A G P +GPA P P G + P PPG +P D+ G
Sbjct: 564 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG-KPGDQ-------G 615
Query: 72 VGGGVGGAQPGSV-PLGQH-LALERGRTLGHGRVGRRDPP----------------PLGL 113
V G G PG V P G+ ERG G G R P P G
Sbjct: 616 VPGEAGA--PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673
Query: 114 LVNPRVAGVDGLDRG--GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG--- 167
P + G+ G +RG G P G G V G G G+ GG+ GL +G
Sbjct: 674 QGPPGLQGMPG-ERGAAGIAGPKGDRGDVGEKGPEGAPGKD----GGR--GLTGPIGPPG 726
Query: 168 -IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
GA +G G GPAG AR GA RG G P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGAR-GAPGERGETGPP 761
Score = 43.1 bits (100), Expect = 4e-04
Identities = 64/223 (28%), Positives = 74/223 (33%), Gaps = 24/223 (10%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
P G+ G+ APG+ SG P PRGL P G+ R D
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDG--QP 281
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRR----------DPPPLGLLVNP 117
AG G VG A P E G T G G + P P G NP
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 341
Query: 118 RVAGVDGLDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGI-GAGHARG 175
G+ G G GI G G G G Q G + GI G +G
Sbjct: 342 GTDGIPGAK--GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 399
Query: 176 GRGAVGPAGQHRA--RLGAAVLRGTAGAP--ARRVGVVAERAA 214
+G GPAG A G RG G P +G ER A
Sbjct: 400 PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGA 442
Score = 42.4 bits (98), Expect = 7e-04
Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 28/203 (13%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P AG G+R A G P GP P RG + P P +R S +
Sbjct: 413 PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 472
Query: 72 VGGGVGGAQPG--SVPLGQHLALERGRTLGHGRV---------GRRDPP-PLGLLVNPRV 119
G +PG +P + L G G+V GR PP P G P V
Sbjct: 473 KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 532
Query: 120 AGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGA 179
G G +G +P G+ G+ G G R L G+ G A G G
Sbjct: 533 MGFPG-PKGANGEPGKAGE---KGLPGAPG--LRGLPGKD---------GETGAAGPPGP 577
Query: 180 VGPAGQHRARLGAAVLRGTAGAP 202
GPAG+ R GA G G P
Sbjct: 578 AGPAGE-RGEQGAPGPSGFQGLP 599
Score = 41.2 bits (95), Expect = 0.002
Identities = 61/222 (27%), Positives = 74/222 (33%), Gaps = 35/222 (15%)
Query: 11 VPRAAGSAGQ---RRAPGLPRSSGPAWAESRARPPRPRGLE------------------- 48
+P A GSAG APG P GP + P P+G
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Query: 49 PRHPPGSPALRPTDRTCSSSSAGVGGGVGGAQP---GSVPLGQHLALERGRTLGHGRVGR 105
P P G+P P + G GGVG P P + + G G G
Sbjct: 406 PAGPQGAPG--PAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 463
Query: 106 RDPP----PLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQA 159
R P P G +P G GL RG P G +G G G R
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523
Query: 160 LGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAG 200
G Q G+ G +G G G AG+ + GA LRG G
Sbjct: 524 QGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG 564
Score = 38.1 bits (87), Expect = 0.014
Identities = 56/201 (27%), Positives = 74/201 (36%), Gaps = 38/201 (18%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G++ APG G PP P G PPG P L + + G
Sbjct: 69 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-----PPGPPGL--GGNFAAQMAGGFDEK 121
Query: 76 VGGAQPGSV--PLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLD 126
GGAQ G + P+G +G R PP P G NP G G+
Sbjct: 122 AGGAQLGVMQGPMGP--------------MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167
Query: 127 --RGGRLDPAGIGQVLGLGVLGGAGR--QRRALGGQ-ALGLLAQVGIGAGHARGGRGAVG 181
G R P G+ G G G+ +R G Q A G G+ +G RG G
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG--VKGHRGYPG 225
Query: 182 PAGQHRARLGAAVLRGTAGAP 202
G + GA ++G +G+P
Sbjct: 226 LDGA-KGEAGAPGVKGESGSP 245
Score = 38.1 bits (87), Expect = 0.014
Identities = 67/221 (30%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 9 VTVPRAA-GSAGQRRAPGLPRSSG---PAWAESRARPPRPRGLEPRHPP----------- 53
VT P+ A G+ G A G P ++G P + PP P G + P
Sbjct: 811 VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 870
Query: 54 --GSPALR-PTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
G P L+ P G G G P P Q LA +RG G+ G R P
Sbjct: 871 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP---PGPQGLAGQRGIVGLPGQRGERGFPG 927
Query: 111 L-GLLVNPRVAGVDGL--DRG--GRLDPAGI----GQVLGLGVLGGAGRQRRALGGQALG 161
L G P G G DRG G + P G+ G+ G G G R G
Sbjct: 928 LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 987
Query: 162 LLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
+ G +GA A G G+ GPAG G RG AGA
Sbjct: 988 DRGETGAVGAPGAPGPPGSPGPAGP----TGKQGDRGEAGA 1024
Score = 35.0 bits (79), Expect = 0.12
Identities = 59/196 (30%), Positives = 67/196 (34%), Gaps = 41/196 (20%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P G G PG P SGP + PR PPG P +P D AG
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGP--------------MGPRGPPGPPG-KPGD----DGEAG 189
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRL 131
G G ERG G G P L + R G GLD G
Sbjct: 190 KPGKAG---------------ERGPPGPQGARGFPGTPGLPGVKGHR--GYPGLD--GAK 230
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQAL-GLLAQVG-IGAGHARGGRGAVGPAGQHRAR 189
AG V G G +G + L G + G GA ARG G GPAG
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PGP 289
Query: 190 LGAAVLRGTAGAPARR 205
+G A G GAP +
Sbjct: 290 VGPAGGPGFPGAPGAK 305
Score = 30.4 bits (67), Expect = 2.9
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G GLP GP+ + + P P G PR PPG P + + G+ G
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSG--PRGPPG-----PVGPSGKDGANGIPGP 1114
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
+G P RGR+ G G PP
Sbjct: 1115 IGPPGP------------RGRS---GETGPAGPP 1133
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 47.4 bits (111), Expect = 2e-05
Identities = 67/216 (31%), Positives = 76/216 (35%), Gaps = 35/216 (16%)
Query: 15 AGSAGQRRAPGLPRSSGP---------AWAESRARPPRPRGLE----PRHPPGSPALRPT 61
AG GQR APG GP A PP P G + P PPG +P
Sbjct: 635 AGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGG-KPG 693
Query: 62 DRTCSSSSAGVG-----GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP------- 109
D+ VG G G P L E+G GHG G + P
Sbjct: 694 DQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPG 753
Query: 110 ---PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQV 166
P GL P G+ G G + D GIG+ G G G R L G LG
Sbjct: 754 DTGPPGLQGMPGERGIAGTP-GPKGDRGGIGEKGAEGTAGNDG--ARGLPG-PLGPPGPA 809
Query: 167 G-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGA 201
G G G RG VGP G R G+ G GA
Sbjct: 810 GPTGEKGEPGPRGLVGPPGS-RGNPGSRGENGPTGA 844
Score = 41.2 bits (95), Expect = 0.002
Identities = 57/192 (29%), Positives = 67/192 (34%), Gaps = 32/192 (16%)
Query: 15 AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
AG+ G R PG GPA P PRGL PPGS S G G
Sbjct: 791 AGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLV--GPPGS-----RGNPGSRGENGPTG 843
Query: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLD--RGGRLD 132
VG A P + E G G G P P GL +P G +G+ +GGR
Sbjct: 844 AVGFAGPQGPDGQPGVKGEPGEPGQKGDAG--SPGPQGLAGSPGPHGPNGVPGLKGGRGT 901
Query: 133 PAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGA 192
G G G AGR +G G G GP G+ + G
Sbjct: 902 QGPPG---ATGFPGSAGR-----------------VGPPGPAGAPGPAGPLGE-PGKEGP 940
Query: 193 AVLRGTAGAPAR 204
LRG G+ R
Sbjct: 941 PGLRGDPGSHGR 952
Score = 40.8 bits (94), Expect = 0.002
Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 19/197 (9%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P +AG G G P +GP + PP RG PGS R DR + G
Sbjct: 911 PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRG-----DPGSHG-RVGDRGPAGPPGG 964
Query: 72 VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPL-GLLVNPRVAGVDGL 125
G G G P P +RG G+ G R P L G P G G
Sbjct: 965 PGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGA 1024
Query: 126 DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ 185
G + P +G G +G G + A G VG RG RG GPAG
Sbjct: 1025 -TGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVG-----ERGDRGDPGPAGL 1078
Query: 186 HRARLGAAVLRGTAGAP 202
++ GA G GAP
Sbjct: 1079 PGSQ-GAPGTPGPVGAP 1094
Score = 40.0 bits (92), Expect = 0.004
Identities = 68/238 (28%), Positives = 87/238 (36%), Gaps = 45/238 (18%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-------------PRHPPGSPA 57
VP G G+ G P S GP P PRG + PPG P+
Sbjct: 121 VPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPS 180
Query: 58 LRPTD---RTCSSSSAGVG--GGVG---GAQPGSV-PLG----QHLALERGRTLGHGRVG 104
D R S+ AG+ G+G G PGSV P+G Q L ++G G G
Sbjct: 181 HPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPG 240
Query: 105 R-RDPPPLGLLVN------PRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAG-------- 149
DP P+G + + P G DG + G +P +G G G G
Sbjct: 241 EPGDPGPMGPIGSRGPEGPPGKPGEDG-EPGRNGNPGEVGFAGSPGARGFPGAPGLPGLK 299
Query: 150 --RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
R + L G + A G G GA+GP G R G G GAP +R
Sbjct: 300 GHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP-RGMPGERGRLGPQGAPGQR 356
Score = 35.8 bits (81), Expect = 0.069
Identities = 61/234 (26%), Positives = 82/234 (35%), Gaps = 38/234 (16%)
Query: 3 PTLLLTVTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTD 62
P + T P A G G G P S+GP + P+G+ R PG P +
Sbjct: 419 PGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGI--RGQPGDPGVPGFK 476
Query: 63 RTCSSSSA----GVGGGVG----------GAQPGSV----PLGQHLAL-------ERGRT 97
G+ G +G PG+V P+G+ A G
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP 536
Query: 98 LGHGRVGRRDP----PPLGLLVNPRVAGVDGLD--RGGRLDPAGIGQVLGLGVLGGAGRQ 151
G G R P P G +P G GL RG +P G LG LG G
Sbjct: 537 GPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGED 596
Query: 152 RRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
R ++G+ Q G +G +G G G G+ G A + G GAP +
Sbjct: 597 GRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGE----AGNAGVPGQRGAPGK 646
Score = 34.3 bits (77), Expect = 0.20
Identities = 62/232 (26%), Positives = 79/232 (34%), Gaps = 63/232 (27%)
Query: 16 GSAGQRRAPGLPRSSGP---------------AWAESRARPPRPRGLE----------PR 50
G+ GQR A G+P GP + A P RG E P
Sbjct: 351 GAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP 410
Query: 51 HPPGSPALR---PTDRTCS----SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRV 103
P GSP L TD T + S G G G A P P Q +G G
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP 470
Query: 104 G----------RRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRR 153
G + +P P G+ G +G RG R DP +G +G G G +
Sbjct: 471 GVPGFKGEAGPKGEPGPHGIQGPIGPPGEEG-KRGPRGDPGTVGPPGPVGERGAPGNR-- 527
Query: 154 ALGGQALGLLAQVGI-GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
G G+ G A+G RG VG +G +G+ G P R
Sbjct: 528 -------GFPGSDGLPGPKGAQGERGPVGSSGP----------KGSQGDPGR 562
Score = 32.0 bits (71), Expect = 1.0
Identities = 58/211 (27%), Positives = 73/211 (34%), Gaps = 30/211 (14%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPALRP 60
+P G AG G S GP+ PP +G+ P+ G +
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 786
Query: 61 TDRTCSSSSA-GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRV 119
+ T + A G+ G +G P P G E+G G VG P G NP
Sbjct: 787 AEGTAGNDGARGLPGPLGPPGPAG-PTG-----EKGEPGPRGLVG-----PPGSRGNPGS 835
Query: 120 AGVDG-LDRGGRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHA 173
G +G G P G GQ G G G++ A GL G G
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895
Query: 174 RGGRGAVGPAGQ--HRARLGAAVLRGTAGAP 202
+GGRG GP G G G AGAP
Sbjct: 896 KGGRGTQGPPGATGFPGSAGRVGPPGPAGAP 926
Score = 30.8 bits (68), Expect = 2.2
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG---- 71
G G GLP GP + A P P G PR PPG + P+ + + G
Sbjct: 1143 GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFG--PRGPPGP--VGPSGKEGNPGPLGPIGP 1198
Query: 72 --VGGGVGGAQPGSVPLGQ-----------HLALERGRTLGHGRVGRRDPPP 110
V G VG A P P G+ HL G +GH DP P
Sbjct: 1199 PGVRGSVGEAGPEGPP-GEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLP 1249
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
P G AG PG+ + GP PP GL PPG+ + P
Sbjct: 315 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 374
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
G AQ ++ LAL RG G GR P PLG +P + G
Sbjct: 375 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 426
Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
G L P G GL G G AGR+ RA A G+ G+ RG G G G+
Sbjct: 427 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 484
Query: 186 -HRARLGAAVLRGTAGAPARR 205
HR GA L G G R
Sbjct: 485 GHRGDTGAQGLPGPPGEDGER 505
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
P G G PGL + GP+ A P RG P PPG P P ++
Sbjct: 901 PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 958
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
GV G G P+G GR G VG P P G P VAG DG D+
Sbjct: 959 GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 1000
Query: 128 GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
G DP G G G G G + VG GA A G GA GP G
Sbjct: 1001 GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1051
Query: 187 RARLGAAVLRGTAGAP 202
A+ G RG G P
Sbjct: 1052 GAK-GDEGTRGFNGPP 1066
Score = 43.9 bits (102), Expect = 3e-04
Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
G +GQ PG P GP + P P G PPG R D + G G
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1211
Query: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
G QPGS G G PP PLG G +G +G +
Sbjct: 1212 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1253
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
DP IG G +G AG + GL VG G A G G GP G
Sbjct: 1254 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1309
Query: 191 GAAVLRGTAGAPARR 205
G LRG AGA +
Sbjct: 1310 GLPGLRGDAGAKGEK 1324
Score = 42.4 bits (98), Expect = 7e-04
Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
T PR G G R A G + G + + PP RGL P+ PPG P
Sbjct: 757 TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 814
Query: 59 ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
P R G G G P V Q A E G G G PP G
Sbjct: 815 GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 868
Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
P AG +G +G P G+ G+ G G R L G A G G
Sbjct: 869 GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 919
Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
G G GPAG R GAA G G P R
Sbjct: 920 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 948
Score = 41.6 bits (96), Expect = 0.001
Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
P G G PG P GP + P P+G P PG ++ D
Sbjct: 592 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 649
Query: 67 -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
GV G GV G++ P G +GRT G G DP P
Sbjct: 650 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 699
Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
GL+ GV GL GR P G LG GA ++ A G G
Sbjct: 700 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 746
Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
RG RG GP GQ R G + +GT+G
Sbjct: 747 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 779
Score = 38.9 bits (89), Expect = 0.008
Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G+ G A G P +GP A P P GL R PGS + R ++ AG G
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1305
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
VG PG L RG G G P +GL+ P G G DRG
Sbjct: 1306 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1353
Query: 136 IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GQ +G+ G +G L G A A+ G G +G +G GP G
Sbjct: 1354 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1406
Score = 38.1 bits (87), Expect = 0.014
Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
A G G+ PG P S GP PP P G R P GSP R +
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1257
Query: 72 VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
+G G VG A P P L G GR G+ PP G + P + G+
Sbjct: 1258 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1315
Query: 124 GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
G D G + + G + G++G G Q R L G + G ++GI
Sbjct: 1316 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371
Query: 169 -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
G +G +GA GP G G ++G G P
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1408
Score = 34.7 bits (78), Expect = 0.15
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
+P A+G G PGLP +GP A+ P P+G + + PPG P
Sbjct: 1362 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1408
Score = 32.7 bits (73), Expect = 0.59
Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G+ PG P G + + PP P G+ P G ++ G G
Sbjct: 809 GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 855
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
G P P Q L G+ G G PP P GL P G+ G G
Sbjct: 856 RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 912
Query: 129 ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
G P+G G G G + A G +G + G G G +
Sbjct: 913 PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 967
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G +GP G+ + G L G AG P
Sbjct: 968 GPIGPTGRDGVQ-GPVGLPGPAGPP 991
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
P G AG PG+ + GP PP GL PPG+ + P
Sbjct: 294 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 353
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
G AQ ++ LAL RG G GR P PLG +P + G
Sbjct: 354 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 405
Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
G L P G GL G G AGR+ RA A G+ G+ RG G G G+
Sbjct: 406 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 463
Query: 186 -HRARLGAAVLRGTAGAPARR 205
HR GA L G G R
Sbjct: 464 GHRGDTGAQGLPGPPGEDGER 484
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
P G G PGL + GP+ A P RG P PPG P P ++
Sbjct: 880 PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 937
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
GV G G P+G GR G VG P P G P VAG DG D+
Sbjct: 938 GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 979
Query: 128 GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
G DP G G G G G + VG GA A G GA GP G
Sbjct: 980 GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1030
Query: 187 RARLGAAVLRGTAGAP 202
A+ G RG G P
Sbjct: 1031 GAK-GDEGTRGFNGPP 1045
Score = 43.9 bits (102), Expect = 3e-04
Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
G +GQ PG P GP + P P G PPG R D + G G
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1190
Query: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
G QPGS G G PP PLG G +G +G +
Sbjct: 1191 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1232
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
DP IG G +G AG + GL VG G A G G GP G
Sbjct: 1233 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1288
Query: 191 GAAVLRGTAGAPARR 205
G LRG AGA +
Sbjct: 1289 GLPGLRGDAGAKGEK 1303
Score = 42.4 bits (98), Expect = 7e-04
Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
T PR G G R A G + G + + PP RGL P+ PPG P
Sbjct: 736 TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 793
Query: 59 ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
P R G G G P V Q A E G G G PP G
Sbjct: 794 GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 847
Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
P AG +G +G P G+ G+ G G R L G A G G
Sbjct: 848 GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 898
Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
G G GPAG R GAA G G P R
Sbjct: 899 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 927
Score = 41.6 bits (96), Expect = 0.001
Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
P G G PG P GP + P P+G P PG ++ D
Sbjct: 571 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 628
Query: 67 -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
GV G GV G++ P G +GRT G G DP P
Sbjct: 629 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 678
Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
GL+ GV GL GR P G LG GA ++ A G G
Sbjct: 679 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 725
Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
RG RG GP GQ R G + +GT+G
Sbjct: 726 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 758
Score = 38.9 bits (89), Expect = 0.008
Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G+ G A G P +GP A P P GL R PGS + R ++ AG G
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1284
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
VG PG L RG G G P +GL+ P G G DRG
Sbjct: 1285 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1332
Query: 136 IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GQ +G+ G +G L G A A+ G G +G +G GP G
Sbjct: 1333 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1385
Score = 38.1 bits (87), Expect = 0.014
Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
A G G+ PG P S GP PP P G R P GSP R +
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1236
Query: 72 VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
+G G VG A P P L G GR G+ PP G + P + G+
Sbjct: 1237 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1294
Query: 124 GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
G D G + + G + G++G G Q R L G + G ++GI
Sbjct: 1295 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350
Query: 169 -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
G +G +GA GP G G ++G G P
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1387
Score = 34.7 bits (78), Expect = 0.15
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
+P A+G G PGLP +GP A+ P P+G + + PPG P
Sbjct: 1341 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1387
Score = 32.7 bits (73), Expect = 0.59
Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G+ PG P G + + PP P G+ P G ++ G G
Sbjct: 788 GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 834
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
G P P Q L G+ G G PP P GL P G+ G G
Sbjct: 835 RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 891
Query: 129 ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
G P+G G G G + A G +G + G G G +
Sbjct: 892 PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 946
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G +GP G+ + G L G AG P
Sbjct: 947 GPIGPTGRDGVQ-GPVGLPGPAGPP 970
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 47.4 bits (111), Expect = 2e-05
Identities = 62/201 (30%), Positives = 74/201 (36%), Gaps = 17/201 (8%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRH----PPGSPALRPTDRTCSS 67
P G AG PG+ + GP PP GL PPG+ + P
Sbjct: 401 PGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 460
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
G AQ ++ LAL RG G GR P PLG +P + G
Sbjct: 461 GDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR--PGPLGQPGSPGLKG-----E 512
Query: 128 GGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ- 185
G L P G GL G G AGR+ RA A G+ G+ RG G G G+
Sbjct: 513 SGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD--RGFDGLPGLPGEK 570
Query: 186 -HRARLGAAVLRGTAGAPARR 205
HR GA L G G R
Sbjct: 571 GHRGDTGAQGLPGPPGEDGER 591
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/196 (32%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRTCSS 67
P G G PGL + GP+ A P RG P PPG P P ++
Sbjct: 987 PGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--PQGPPGAA 1044
Query: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDR 127
GV G G P+G GR G VG P P G P VAG DG D+
Sbjct: 1045 GEKGVPGEKG-------PIG-----PTGRDGVQGPVGL--PGPAG---PPGVAGEDG-DK 1086
Query: 128 GGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQH 186
G DP G G G G G + VG GA A G GA GP G
Sbjct: 1087 GEVGDPGQKGTKGNKGEHGPPGPP---------GPIGPVGQPGAAGADGEPGARGPQGHF 1137
Query: 187 RARLGAAVLRGTAGAP 202
A+ G RG G P
Sbjct: 1138 GAK-GDEGTRGFNGPP 1152
Score = 43.9 bits (102), Expect = 3e-04
Identities = 59/195 (30%), Positives = 68/195 (34%), Gaps = 29/195 (14%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSAGVGG 74
G +GQ PG P GP + P P G PPG R D + G G
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG--AKGDRGEDG 1297
Query: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGLD--RGGRL 131
G QPGS G G PP PLG G +G +G +
Sbjct: 1298 EPG--QPGS----------------PGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1339
Query: 132 DPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARL 190
DP IG G +G AG + GL VG G A G G GP G
Sbjct: 1340 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP---- 1395
Query: 191 GAAVLRGTAGAPARR 205
G LRG AGA +
Sbjct: 1396 GLPGLRGDAGAKGEK 1410
Score = 42.4 bits (98), Expect = 7e-04
Identities = 65/210 (30%), Positives = 73/210 (34%), Gaps = 33/210 (15%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----------PRHPPGSPAL- 58
T PR G G R A G + G + + PP RGL P+ PPG P
Sbjct: 843 TGPR--GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD 900
Query: 59 ----RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLL 114
P R G G G P V Q A E G G G PP G
Sbjct: 901 GLPGHPGQR----GEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP--GEQ 954
Query: 115 VNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHAR 174
P AG +G +G P G+ G+ G G R L G A G G
Sbjct: 955 GLPGTAGKEG-TKGDPGPPGAPGKDGPAGLRGFPG--ERGLPGTA------GGPGLKGNE 1005
Query: 175 GGRGAVGPAGQHRARLGAAVLRGTAGAPAR 204
G G GPAG R GAA G G P R
Sbjct: 1006 GPSGPPGPAGSPGER-GAAGSGGPIGPPGR 1034
Score = 41.6 bits (96), Expect = 0.001
Identities = 61/213 (28%), Positives = 74/213 (34%), Gaps = 49/213 (23%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCS----- 66
P G G PG P GP + P P+G P PG ++ D
Sbjct: 678 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHK 735
Query: 67 -----------SSSAGVGG-----GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPP 110
GV G GV G++ P G +GRT G G DP P
Sbjct: 736 GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEG-----PKGRT---GPTG--DPGP 785
Query: 111 LGLLVNPRVAGVDGL-DRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIG 169
GL+ GV GL GR P G LG GA ++ A G G
Sbjct: 786 PGLMGEKGKLGVPGLPGYPGRQGPKG---SLGFPGFPGASGEKGARGLS----------G 832
Query: 170 AGHARGGRGAVGPAGQH--RARLGAAVLRGTAG 200
RG RG GP GQ R G + +GT+G
Sbjct: 833 KSGPRGERGPTGPRGQRGPRGATGKSGAKGTSG 865
Score = 38.9 bits (89), Expect = 0.008
Identities = 54/173 (31%), Positives = 67/173 (38%), Gaps = 20/173 (11%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G+ G A G P +GP A P P GL R PGS + R ++ AG G
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL--RGLPGS--VGQQGRPGATGQAGPPGP 1391
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAG 135
VG PG L RG G G P +GL+ P G G DRG
Sbjct: 1392 VG--PPGLPGL-------RGDAGAKGEKGH--PGLIGLIGPPGEQGEKG-DRGLPGPQGS 1439
Query: 136 IGQVLGLGVLGGAG----RQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAG 184
GQ +G+ G +G L G A A+ G G +G +G GP G
Sbjct: 1440 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1492
Score = 38.1 bits (87), Expect = 0.014
Identities = 61/221 (27%), Positives = 80/221 (36%), Gaps = 47/221 (21%)
Query: 14 AAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPAL--RPTDRTCSSSSAG 71
A G G+ PG P S GP PP P G R P GSP R +
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENG---PPGPLG--KRGPAGSPGSEGRQGGKGAKGDPGA 1343
Query: 72 VG-----GGVGGAQPGSVPLGQHLALERGRTLGHGR---VGRRDPPPLGLLVNPRVAGVD 123
+G G VG A P P L G GR G+ PP G + P + G+
Sbjct: 1344 IGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPP--GPVGPPGLPGLR 1401
Query: 124 GLDRGGRLDPAGIGQVLGLGVLGGAGRQ----RRALGGQ--ALGLLAQVGI--------- 168
G D G + + G + G++G G Q R L G + G ++GI
Sbjct: 1402 G-DAGAKGEKGHPGLI---GLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457
Query: 169 -------GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
G +G +GA GP G G ++G G P
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPGGPK----GEKGVQGPPGHP 1494
Score = 34.7 bits (78), Expect = 0.15
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSP 56
+P A+G G PGLP +GP A+ P P+G + + PPG P
Sbjct: 1448 IPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1494
Score = 32.7 bits (73), Expect = 0.59
Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 40/205 (19%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGGG 75
G G+ PG P G + + PP P G+ P G ++ G G
Sbjct: 895 GPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV--GPQG-----------AAGETGPMGE 941
Query: 76 VGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-------PLGLLVNPRVAGVDGLDRG 128
G P P Q L G+ G G PP P GL P G+ G G
Sbjct: 942 RGHPGPPGPPGEQGLPGTAGK---EGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGG 998
Query: 129 ----GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG-------IGAGHARGGR 177
G P+G G G G + A G +G + G G G +
Sbjct: 999 PGLKGNEGPSG-----PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 1053
Query: 178 GAVGPAGQHRARLGAAVLRGTAGAP 202
G +GP G+ + G L G AG P
Sbjct: 1054 GPIGPTGRDGVQ-GPVGLPGPAGPP 1077
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 47.0 bits (110), Expect = 3e-05
Identities = 62/208 (29%), Positives = 80/208 (38%), Gaps = 25/208 (12%)
Query: 4 TLLLTVTVPRAAGSAGQRRAPGLP-RSSGPAWAESRARP----PRPRGLEPRHPPGSPAL 58
TL +P + Q R P L R + P + P P GL PR PPG+P
Sbjct: 63 TLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPP 122
Query: 59 RPTDRTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT-LGHGRVGRRDP--PPLGLLV 115
R RT + G+ A + P G+ A +RGR GR RR P PP LL
Sbjct: 123 R-CPRTLAPGPRGLFPAPPPAPARTGPAGK-AAADRGRPGPAAGRRVRRSPSFPPF-LLA 179
Query: 116 NPRVAGVDGLDRGGRLDPAGIGQVL---GLGVLGGAGRQRRALGGQALGLLAQVGIGAGH 172
R+ GR P + +L G LGG R++ A G G A+ G G G
Sbjct: 180 QTRL---------GRTGPLALCLLLLLHGAMRLGGGSREKLACG--RAGRAARTGRGEGG 228
Query: 173 ARGGRGAVGPAGQHRARLGAAVLRGTAG 200
R A G + R + R G
Sbjct: 229 RRAEEEAAGRRRRRRPGRTRGIPRAAGG 256
Score = 28.9 bits (63), Expect = 8.5
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 170 AGHARGGRGAVGPAGQHRAR--------LGAAVLRGTAGAPARRVGVVAERAASAACSLQ 221
AG A RG GPA R R L A G G P ++ A
Sbjct: 149 AGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTG-PLALCLLLLLHGAMRLGGGS 207
Query: 222 RQRLHARRRVREQRGRVAREVRGRVIGRGREVQPVVGRRHKPALRRGRARVLGLLRR 278
R++L R GR AR RG R E RR +P RG R G L R
Sbjct: 208 REKLACGRA-----GRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSR 259
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 47.0 bits (110), Expect = 3e-05
Identities = 64/215 (29%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHP-----PGSPALRPTDRTCS 66
P G GQ APG+P G + P P+G P H PG P R
Sbjct: 850 PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKG-PPGHQGKDGRPGHPGQR------- 901
Query: 67 SSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP-PLGLLVNPRVAGVDGL 125
G G G P V LG +G+T G +G R PP P G + G++G
Sbjct: 902 -GELGFQGQTGPPGPAGV-LG-----PQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGR 954
Query: 126 DRG-GRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLAQVG----IGAGHARGGRGA 179
+ G L P G +G+ G+ G G + GL G +GA + G RG
Sbjct: 955 EGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGP 1014
Query: 180 VGPAGQHRARLGAAVLRGTAG--APARRVGVVAER 212
+GPAG +G G+ G PA + G ER
Sbjct: 1015 LGPAG----GIGLPGQSGSEGPVGPAGKKGSRGER 1045
Score = 43.9 bits (102), Expect = 3e-04
Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 16/187 (8%)
Query: 11 VPRAAGSAGQRRAPGLPRSSGPAWAESR-ARPPRP-----RGLEPRHPPGSPA--LRPTD 62
+P G G + PG P GP + + RP P G + + P PA L P
Sbjct: 864 IPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQG 923
Query: 63 RTCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGV 122
+T G G G P P Q L GR G +G P PLG + G
Sbjct: 924 KTGEVGPLGERGPPG---PPGPPGEQGLPGLEGREGAKGELG--PPGPLGKEGPAGLRGF 978
Query: 123 DGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGP 182
G +GG DP G G G G G+ L GIG G G VGP
Sbjct: 979 PG-PKGGPGDPGPTGLKGDKGPPGPVG--ANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035
Query: 183 AGQHRAR 189
AG+ +R
Sbjct: 1036 AGKKGSR 1042
Score = 42.0 bits (97), Expect = 0.001
Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 24/177 (13%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE-PRHPPGSPALRPTDRTCSSSSA 70
P G G+ GLP G E P PRGL+ P PPG + R + +
Sbjct: 481 PGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPG--RVGKMGRPGADGAR 538
Query: 71 GVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGR 130
G+ G G L E+G+ G VG+ PP G DG +RG
Sbjct: 539 GLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPP-----------GEDG-ERGAE 586
Query: 131 LDPAGIGQVLGLGVLGGAGRQRRALGGQ-ALGLLAQVGI-GAGHARGGRGAVGPAGQ 185
P GQ G R LG + + G + G+ G A G +G VGP G+
Sbjct: 587 GPPGPTGQ-------AGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGE 636
Score = 39.7 bits (91), Expect = 0.005
Identities = 66/225 (29%), Positives = 85/225 (37%), Gaps = 43/225 (19%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSP----ALRPTDR 63
P G++G+ APG P GP+ R +G + P PPG A P R
Sbjct: 1294 PGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGR 1353
Query: 64 TCSSSSAGVGGGVGG----AQPGSV----PLG-QHLALERGRT-----LGH-GRVGRRDP 108
G+ G VG PG + PLG L +G T GH G +G P
Sbjct: 1354 VGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGP 1413
Query: 109 P-PLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVG 167
P G + + GV G G + DP G + LG G G G L Q G
Sbjct: 1414 PGEAGEKGDQGLPGVQG-PPGPKGDPGPPGPIGSLGHPGPPG---------VAGPLGQKG 1463
Query: 168 IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARRVGVVAER 212
++G G++GP G G A G GAPA G+ R
Sbjct: 1464 -----SKGSPGSMGPRGD----TGPAGPPGPPGAPAELHGLRRRR 1499
Score = 33.5 bits (75), Expect = 0.34
Identities = 61/225 (27%), Positives = 75/225 (33%), Gaps = 42/225 (18%)
Query: 9 VTVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLE----PRHPPGSPALRPTDRT 64
+ P G G PGLP S GP P +G + PPG P R T
Sbjct: 658 IGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGT 717
Query: 65 CSSSS-------------AGVGGGVG----GAQPGSV-PLGQHLALERGRTLGHGRVGRR 106
+ G G VG +PG+ P G+ G G+ G
Sbjct: 718 SGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGED--GPEGPKGQAGQAGEE 775
Query: 107 DPPPLGLLVNPRVAGVDGL-DRGGRLDPAG-IGQVLGLGVLGGAGRQRRALGGQALGLLA 164
PP G GV GL GR P G IG LG +G G+ G
Sbjct: 776 GPP--GSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKS---------GKTG 824
Query: 165 QVGI----GAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
Q G+ G +RG RG G GQ + G G G P +
Sbjct: 825 QPGLEGERGPPGSRGERGQPGATGQPGPK-GDVGQDGAPGIPGEK 868
Score = 29.3 bits (64), Expect = 6.5
Identities = 63/227 (27%), Positives = 74/227 (32%), Gaps = 57/227 (25%)
Query: 25 GLPRSSGPAWAESRARPPRPRGL--EP-----------------RHPPGSPALRPTDRTC 65
G P + GP + PP P G +P R PPG+ + P
Sbjct: 392 GPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAG 451
Query: 66 SS----------------------SSAGVGGGVG-GAQPGSVPLGQHLAL--ERGRTLGH 100
S S G G VG +PG V L H L E G
Sbjct: 452 GSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQ 511
Query: 101 GRVGRRDP--PP--LGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALG 156
G G + P PP +G + P G GL G P G GL L G QR G
Sbjct: 512 GPRGLQGPHGPPGRVGKMGRPGADGARGLP--GDTGPKGDRGFDGLPGLPGEKGQRGDFG 569
Query: 157 GQALGLLAQVG-IGAGHARGGRGAVGPAGQHRARLGAAVLRGTAGAP 202
+ Q G G RG G GP GQ G L G G+P
Sbjct: 570 H-----VGQPGPPGEDGERGAEGPPGPTGQ-AGEPGPRGLLGPRGSP 610
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
G G+ GLP SSG R PRG + R PG+P S
Sbjct: 1907 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 1959
Query: 69 SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
G G G P VP + G T +G GRR PP G
Sbjct: 1960 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 2001
Query: 129 GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
+ + G GQ G G G Q A GL+ + GI RG GA G G+ R
Sbjct: 2002 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 2058
Query: 189 RLGAAVLRGTAGAPARRVGV 208
R G +G G P + G+
Sbjct: 2059 RTGPLGRKGEPGEPGPKGGI 2078
Score = 30.8 bits (68), Expect = 2.2
Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P A G+ G PG G A+ A P P GL P G
Sbjct: 2000 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 2046
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
GG G PG ERGRT GR G +P P G + N PR G DG
Sbjct: 2047 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 2094
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
+ GR G G G G G L G G RG RG GP
Sbjct: 2095 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 2143
Query: 184 G 184
G
Sbjct: 2144 G 2144
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
G G+ GLP SSG R PRG + R PG+P S
Sbjct: 2113 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 2165
Query: 69 SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
G G G P VP + G T +G GRR PP G
Sbjct: 2166 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 2207
Query: 129 GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
+ + G GQ G G G Q A GL+ + GI RG GA G G+ R
Sbjct: 2208 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 2264
Query: 189 RLGAAVLRGTAGAPARRVGV 208
R G +G G P + G+
Sbjct: 2265 RTGPLGRKGEPGEPGPKGGI 2284
Score = 30.8 bits (68), Expect = 2.2
Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P A G+ G PG G A+ A P P GL P G
Sbjct: 2206 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 2252
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
GG G PG ERGRT GR G +P P G + N PR G DG
Sbjct: 2253 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 2300
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
+ GR G G G G G L G G RG RG GP
Sbjct: 2301 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 2349
Query: 184 G 184
G
Sbjct: 2350 G 2350
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 35/200 (17%)
Query: 16 GSAGQRRAPGLPRSSGPAWAESRARPPRPRG-------LEPRHPPGSPALRPTDRTCSSS 68
G G+ GLP SSG R PRG + R PG+P S
Sbjct: 1506 GLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQ-------DSQ 1558
Query: 69 SAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRG 128
G G G P VP + G T +G GRR PP G
Sbjct: 1559 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPP------------------G 1600
Query: 129 GRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQHRA 188
+ + G GQ G G G Q A GL+ + GI RG GA G G+ R
Sbjct: 1601 AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISG--PRGSGGAAGAPGE-RG 1657
Query: 189 RLGAAVLRGTAGAPARRVGV 208
R G +G G P + G+
Sbjct: 1658 RTGPLGRKGEPGEPGPKGGI 1677
Score = 30.8 bits (68), Expect = 2.2
Identities = 54/181 (29%), Positives = 59/181 (32%), Gaps = 44/181 (24%)
Query: 12 PRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAG 71
P A G+ G PG G A+ A P P GL P G
Sbjct: 1599 PGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP-------------RG 1645
Query: 72 VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGR-RDPPPLGLLVN--PRVA----GVDG 124
GG G PG ERGRT GR G +P P G + N PR G DG
Sbjct: 1646 SGGAAGA--PG----------ERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 1693
Query: 125 LDRGGRLDPAGIGQVLGL-GVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
+ GR G G G G G L G G RG RG GP
Sbjct: 1694 VGSEGRRGKKGERGFPGYPGPKGNPGEP--GLNGTT---------GPKGIRGRRGNSGPP 1742
Query: 184 G 184
G
Sbjct: 1743 G 1743
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 46.6 bits (109), Expect = 4e-05
Identities = 73/229 (31%), Positives = 86/229 (37%), Gaps = 55/229 (24%)
Query: 10 TVPRAAGSAGQR--RAPGLPRSSG-----------------PAWAESRARPPRPRGLEPR 50
T PR GS G R P LP+ + P AE +R PR R R
Sbjct: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAAR 241
Query: 51 HPPGSPALRPTDRTCSSSSAG-VGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPP 109
PP +P R S +AG G G G + + P R G G G R+P
Sbjct: 242 PPP-APGPGALSRASRSRAAGRPGPGFHGGEKAAAP----------RAPGGG--GGRNPG 288
Query: 110 PLGLLVNPRVAGVD--GLD-------RGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGG 157
LG P A D GL R G D AG Q G G R+RR GG
Sbjct: 289 ALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGG 348
Query: 158 QALGLLAQVGIGAG-HARGGRGAVGPAGQHRARLGAAVLRGTAGAPARR 205
G G G HA G A P +H +GAAVLR +G +RR
Sbjct: 349 G--------GEGEGTHATHGP-ASPPGRRHDEEVGAAVLRAGSGEGSRR 388
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 46.2 bits (108), Expect = 5e-05
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 42 PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
P PRG P P G A L+PT DR C G GGG GGA+ G+ G+
Sbjct: 14 PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73
Query: 91 ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
E GR G R + +P P + A D L G +PA G+ G + R
Sbjct: 74 RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133
Query: 151 QRRALGGQALGLLAQVG 167
+ G+ G + G
Sbjct: 134 ESERAPGRGPGARSSAG 150
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 46.2 bits (108), Expect = 5e-05
Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
T PR GS G G P+S P E+ A P+P P P + R R + S
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236
Query: 70 AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
G G AQP +PL H L GR GRR P
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291
Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
GL RG D AG Q G G R+RR GG G G G HA G
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341
Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
A P +H +GAAVLR +G +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 46.2 bits (108), Expect = 5e-05
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 42 PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
P PRG P P G A L+PT DR C G GGG GGA+ G+ G+
Sbjct: 14 PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73
Query: 91 ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
E GR G R + +P P + A D L G +PA G+ G + R
Sbjct: 74 RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133
Query: 151 QRRALGGQALGLLAQVG 167
+ G+ G + G
Sbjct: 134 ESERAPGRGPGARSSAG 150
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 46.2 bits (108), Expect = 5e-05
Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
T PR GS G G P+S P E+ A P+P P P + R R + S
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236
Query: 70 AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
G G AQP +PL H L GR GRR P
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291
Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
GL RG D AG Q G G R+RR GG G G G HA G
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341
Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
A P +H +GAAVLR +G +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 46.2 bits (108), Expect = 5e-05
Identities = 67/207 (32%), Positives = 78/207 (37%), Gaps = 31/207 (14%)
Query: 10 TVPRAAGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSS 69
T PR GS G G P+S P E+ A P+P P P + R R + S
Sbjct: 182 TPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESR 236
Query: 70 AGVGGGVGGAQPGSVPLG--QHLALERGRTLGHGRV-----GRRDPPPLGLLVNPRVAGV 122
G G AQP +PL H L GR GRR P
Sbjct: 237 -----GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291
Query: 123 DGLDRGGRLDPAGIGQ---VLGLGVLGGAGRQRRALGGQALGLLAQVGIGAG-HARGGRG 178
GL RG D AG Q G G R+RR GG G G G HA G
Sbjct: 292 VGLRRGD-CDRAGSSQPPATSGNGERCRFCRRRRRRGGG--------GEGEGTHATHGP- 341
Query: 179 AVGPAGQHRARLGAAVLRGTAGAPARR 205
A P +H +GAAVLR +G +RR
Sbjct: 342 ASPPGRRHDEEVGAAVLRAGSGEGSRR 368
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 45.1 bits (105), Expect = 1e-04
Identities = 95/342 (27%), Positives = 114/342 (33%), Gaps = 43/342 (12%)
Query: 26 LPRSSGPAWAESRARP---PRPRGLEPRHPPG--SPALRPTDRTCSSSSAGVGGGVGGAQ 80
L +GP A SR P P PR PP +P LRP G G V
Sbjct: 4 LSPGTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPA 63
Query: 81 PGSVPLGQHLALERGRT----LGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGI 136
++ L LAL GR LG GR R PP LLV + + R+D +
Sbjct: 64 ARALALALALALAAGRRLLAGLGLGR-PRSRPPGRALLVVVLLVVLGPGSVPRRVDQVHL 122
Query: 137 GQVLGLGVLGGAGRQRRALGGQA-----------LGLLAQVGIGAGHARGGRGAVGPAGQ 185
Q LGL A RR A L LL +G G R V P Q
Sbjct: 123 -QHLGLQPAPRAAAARREQPADATLISDLREVFILKLLQADVMGEPELWGRRSDVQP--Q 179
Query: 186 HRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGR 245
R G RG G P++ + + R RRR+R +R R R
Sbjct: 180 ERGGGG----RG-RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAA 234
Query: 246 VIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRP------------ 293
G G G A G AR R + P GV A R RP
Sbjct: 235 EFGLGGRTCVWQGAAQHRARPAGLARA-PRARPRDPAGVSRAPPRPRPHPASPAPGDGAL 293
Query: 294 -GARARARVEAGLGVVAHELVLQERAGHGVAGPGHDLRARRV 334
GA A A GL + + G A P +L A V
Sbjct: 294 RGAEATAPAALGLVQPRPKSDIDSPPPRGRAAPSKELEAPSV 335
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 45.1 bits (105), Expect = 1e-04
Identities = 95/342 (27%), Positives = 114/342 (33%), Gaps = 43/342 (12%)
Query: 26 LPRSSGPAWAESRARP---PRPRGLEPRHPPG--SPALRPTDRTCSSSSAGVGGGVGGAQ 80
L +GP A SR P P PR PP +P LRP G G V
Sbjct: 4 LSPGTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPA 63
Query: 81 PGSVPLGQHLALERGRT----LGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGI 136
++ L LAL GR LG GR R PP LLV + + R+D +
Sbjct: 64 ARALALALALALAAGRRLLAGLGLGR-PRSRPPGRALLVVVLLVVLGPGSVPRRVDQVHL 122
Query: 137 GQVLGLGVLGGAGRQRRALGGQA-----------LGLLAQVGIGAGHARGGRGAVGPAGQ 185
Q LGL A RR A L LL +G G R V P Q
Sbjct: 123 -QHLGLQPAPRAAAARREQPADATLISDLREVFILKLLQADVMGEPELWGRRSDVQP--Q 179
Query: 186 HRARLGAAVLRGTAGAPARRVGVVAERAASAACSLQRQRLHARRRVREQRGRVAREVRGR 245
R G RG G P++ + + R RRR+R +R R R
Sbjct: 180 ERGGGG----RG-RGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAA 234
Query: 246 VIGRGREVQPVVGRRHKPALRRGRARVLGLLRRQQPVGVRHAAVRTRP------------ 293
G G G A G AR R + P GV A R RP
Sbjct: 235 EFGLGGRTCVWQGAAQHRARPAGLARA-PRARPRDPAGVSRAPPRPRPHPASPAPGDGAL 293
Query: 294 -GARARARVEAGLGVVAHELVLQERAGHGVAGPGHDLRARRV 334
GA A A GL + + G A P +L A V
Sbjct: 294 RGAEATAPAALGLVQPRPKSDIDSPPPRGRAAPSKELEAPSV 335
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,496,052
Number of Sequences: 37866
Number of extensions: 1119880
Number of successful extensions: 9333
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 568
Number of HSP's that attempted gapping in prelim test: 6834
Number of HSP's gapped (non-prelim): 2188
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.