Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293254 Sequence: fasta or formatted (344aa) NCBI GI: 239755509
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         56           5
 C cysteine            0.6          2           1
 D aspartate           2.9         10           1
 E glutamate           3.5         12           1
 F phenylalanine       0.9          3           1
 G glycine            10.2         35           4
 H histidine           2.3          8           1
 I isoleucine          0.9          3           1
 K lysine              1.5          5           1
 L leucine            11.0         38           2
 M methionine          0.6          2           1
 N asparagine          0.0          0           0
 P proline            14.2         49           3
 Q glutamine           4.4         15           1
 R arginine           16.3         56           6
 S serine              6.1         21           1
 T threonine           2.0          7           1
 V valine              5.5         19           3
 W tryptophan          0.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289377          1.000   PREDICTED: hypothetical protein 
LOC100289377          1.000   PREDICTED: hypothetical protein XP_002343119 
LOC100287104          0.039   PREDICTED: hypothetical protein XP_002343630 
LOC100293596          0.036   PREDICTED: similar to mucin 
LOC100291311          0.036   PREDICTED: hypothetical protein XP_002347439 
LOC100289410          0.036   PREDICTED: hypothetical protein XP_002344274 
APC2                  0.033   adenomatosis polyposis coli 2 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
LOC283999             0.032   hypothetical protein LOC283999 
HABP4                 0.032   hyaluronan binding protein 4 
LOC100130897          0.030   PREDICTED: hypothetical protein 
LOC100130897          0.030   PREDICTED: hypothetical protein 
FLJ37078              0.030   hypothetical protein LOC222183 
LOC100291533          0.029   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.029   PREDICTED: hypothetical protein XP_002342946 
LOC100292057          0.029   PREDICTED: hypothetical protein XP_002345830 
LOC100287121          0.029   PREDICTED: hypothetical protein 
LOC100287121          0.029   PREDICTED: hypothetical protein XP_002342511 
SRRM1                 0.029   serine/arginine repetitive matrix 1 
LOC100291147          0.027   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.027   PREDICTED: hypothetical protein XP_002344188 
LOC100127930          0.026   PREDICTED: hypothetical protein 
LOC100128511          0.026   PREDICTED: hypothetical protein 
LOC100132891          0.026   PREDICTED: hypothetical protein 
LOC100128511          0.026   PREDICTED: hypothetical protein 
LOC100132891          0.026   PREDICTED: hypothetical protein 
LOC100128511          0.026   PREDICTED: hypothetical protein 
LOC100132891          0.026   PREDICTED: hypothetical protein 
TTMA                  0.026   hypothetical protein LOC645369 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press