Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100127891 Sequence: fasta or formatted (460aa) NCBI GI: 239509031
Description:

PREDICTED: similar to hCG2042508

Not currently referenced in the text

Other entries for this name:
alt mRNA {460aa} PREDICTED: similar to hCG2042508
alt mRNA {460aa} PREDICTED: similar to hCG2042508
alt prot {480aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         44           2
 C cysteine            1.7          8           1
 D aspartate           2.0          9           1
 E glutamate           4.8         22           2
 F phenylalanine       2.0          9           2
 G glycine            13.0         60           4
 H histidine           3.0         14           2
 I isoleucine          2.0          9           2
 K lysine              3.0         14           2
 L leucine             7.6         35           3
 M methionine          1.1          5           1
 N asparagine          1.5          7           1
 P proline            13.7         63           3
 Q glutamine           5.2         24           2
 R arginine           12.0         55           6
 S serine              7.2         33           2
 T threonine           5.9         27           2
 V valine              3.3         15           2
 W tryptophan          0.7          3           1
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042508 
LOC100127891          1.000   PREDICTED: similar to hCG2042508 
LOC100127891          1.000   PREDICTED: similar to hCG2042508 
LOC100127891          0.855   PREDICTED: hypothetical protein 
SRRM2                 0.042   splicing coactivator subunit SRm300 
WAS                   0.040   Wiskott-Aldrich syndrome protein 
COL1A1                0.038   alpha 1 type I collagen preproprotein 
CPSF6                 0.038   cleavage and polyadenylation specific factor 6, 68 ...
SCAF1                 0.038   SR-related CTD-associated factor 1 
COL11A1               0.036   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.036   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.036   alpha 1 type XI collagen isoform A preproprotein [Ho...
PRB1                  0.036   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB4                  0.035   proline-rich protein BstNI subfamily 4 precursor [Ho...
COL5A1                0.035   alpha 1 type V collagen preproprotein 
COL7A1                0.035   alpha 1 type VII collagen precursor 
PRB2                  0.035   proline-rich protein BstNI subfamily 2 
SRRM1                 0.035   serine/arginine repetitive matrix 1 
PDCD7                 0.034   programmed cell death 7 
SHANK1                0.034   SH3 and multiple ankyrin repeat domains 1 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
LOC100293055          0.032   PREDICTED: similar to COL22A1 protein 
DIAPH1                0.032   diaphanous 1 isoform 2 
DIAPH1                0.032   diaphanous 1 isoform 1 
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 
SYN1                  0.032   synapsin I isoform Ia 
SYN1                  0.032   synapsin I isoform Ib 
PTPN23                0.032   protein tyrosine phosphatase, non-receptor type 23 [...
COL22A1               0.032   collagen, type XXII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press