Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169160951

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169160951 PREDICTED: hypothetical protein [Homo sapiens]
         (109 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160951 PREDICTED: hypothetical protein [Homo sapiens]           225   5e-60
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]         32   0.084
gi|239743256 PREDICTED: hypothetical protein XP_002342781 [Homo ...    31   0.24 
gi|239508931 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]                    31   0.24 
gi|239751744 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]             28   1.6  
gi|27886557 msh homeobox 2 [Homo sapiens]                              28   2.1  
gi|239757235 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]         27   2.7  
gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens]         27   2.7  
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    27   3.5  
gi|116268101 leucine rich repeat containing 62 [Homo sapiens]          27   3.5  
gi|157168329 formin 1 [Homo sapiens]                                   27   4.6  
gi|4885237 forkhead box C2 [Homo sapiens]                              27   4.6  
gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|116174734 pappalysin 2 isoform 2 [Homo sapiens]                     27   4.6  
gi|116174738 pappalysin 2 isoform 1 [Homo sapiens]                     27   4.6  
gi|194018553 solute carrier family 9 isoform 3 regulator 2 isofo...    27   4.6  
gi|71897229 solute carrier family 9 isoform 3 regulator 2 isofor...    27   4.6  
gi|18201900 T-box 6 [Homo sapiens]                                     27   4.6  
gi|110431348 deleted in colorectal carcinoma [Homo sapiens]            26   6.0  
gi|109689718 abhydrolase domain containing 12 isoform a [Homo sa...    26   6.0  
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    26   6.0  
gi|40353729 Ras and Rab interactor 3 [Homo sapiens]                    26   6.0  
gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens]             26   6.0  
gi|13375682 G protein-coupled receptor 172A [Homo sapiens]             26   6.0  
gi|110349719 titin isoform N2-A [Homo sapiens]                         26   7.9  

>gi|169160951 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 109

 Score =  225 bits (574), Expect = 5e-60
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL 60
           MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL
Sbjct: 1   MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL 60

Query: 61  QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR 109
           QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR
Sbjct: 61  QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR 109


>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
          Length = 931

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 32  PSLPLPVTHHFLAAALVSGAAAV------LQCETLQEPLPSLPTAHQSPSALKGQQP 82
           PSL  P T+H    A+  G  +V      LQ E    P P L    Q PS +KG  P
Sbjct: 599 PSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPSLIKGVAP 655


>gi|239743256 PREDICTED: hypothetical protein XP_002342781 [Homo
          sapiens]
          Length = 142

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 27 SKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSL 86
          ++  LP +P   +   L A   +    +     LQ  L SL   H +PSA         +
Sbjct: 29 AQGALPHIPSSTSRDLLLAVTPAHPLPLRTLHVLQAQLASLRMTHHTPSAPSTAPTRTLV 88

Query: 87 PGSSCGC 93
            S+CGC
Sbjct: 89 TASTCGC 95


>gi|239508931 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 27 SKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSL 86
          ++  LP +P   +   L A   +    +     LQ  L SL   H +PSA         +
Sbjct: 29 AQGALPHIPSSTSRDLLLAVTPAHPLPLRTLHVLQAQLASLRMTHHTPSAPSTAPTRTLV 88

Query: 87 PGSSCGC 93
            S+CGC
Sbjct: 89 TASTCGC 95


>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
          Length = 1711

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 1   MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVS 49
           M   PEC+++  +   KS  ++L L ++ K P +P+    H  + AL+S
Sbjct: 611 MASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLS 659


>gi|239751744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 44  AAALVSGAAAVLQCETLQEPL--PSLPTAHQSPSALKGQQPCLSLPGSSCGC 93
           AAA     A + QC    EP    S P     P A   + P  +LP   CGC
Sbjct: 114 AAARPEAIAGLTQCTAHGEPHFPESSPCGTNVPEAANRRHPKTTLPKGLCGC 165


>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
          Length = 1580

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 61   QEPLPSLPTAH---QSPSAL---KGQQPCLSLPGSSCGCQPRLLLVCQ 102
            Q P   LP AH     PS+L   +G QPC S  GS     PR  L  Q
Sbjct: 1358 QGPESCLPGAHGMGSQPSSLAVVRGYQPCASFGGSRRQAMPRDSLALQ 1405


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 11  RRERLEKSEPERLHLDSKAKLP---SLPLPVTHHFLAAAL 47
           + +RL+++E E+L + +K  LP   SLP P++    AA++
Sbjct: 196 KAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASI 235


>gi|239757235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 352

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 44  AAALVSGAAAVLQCETLQEPL---PSLPTAHQSPSALKGQQPCLSLPGSSCGC 93
           AAA     A + QC    EP    PS P     P A   + P  +LP   CGC
Sbjct: 114 AAARPEAIAGLTQCTAHGEPHFPEPS-PCGTNVPEAANRRHPKTTLPKGLCGC 165


>gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]
          Length = 1237

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 15  LEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSP 74
           L+KS    L  D+    P + LP+ +         G+  + +      PLPS+    QSP
Sbjct: 933 LQKSLKFNLMSDAPGDSPRIHLPLNYP-------PGSPDLGRHYRSNSPLPSIQLQPQSP 985

Query: 75  SALKGQQPCLSLP 87
           SA K  Q    LP
Sbjct: 986 SASKKHQVVQDLP 998


>gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens]
          Length = 1060

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 15  LEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSP 74
           L+KS    L  D+    P + LP+ +         G+  + +      PLPS+    QSP
Sbjct: 933 LQKSLKFNLMSDAPGDSPRIHLPLNYP-------PGSPDLGRHYRSNSPLPSIQLQPQSP 985

Query: 75  SALKGQQPCLSLP 87
           SA K  Q    LP
Sbjct: 986 SASKKHQVVQDLP 998


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/67 (31%), Positives = 30/67 (44%)

Query: 2   KKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQ 61
           KK+ E     +++ EK + +    + K K P+ PL +    LA  L S A A      L 
Sbjct: 620 KKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLP 679

Query: 62  EPLPSLP 68
             LP LP
Sbjct: 680 SLLPVLP 686


>gi|116268101 leucine rich repeat containing 62 [Homo sapiens]
          Length = 820

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 21  ERLHLDSKAKLPSLPL--PVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALK 78
           +RL  +S  +    PL  P  +H L       A  VLQ +     LP+ P +H +P +  
Sbjct: 211 DRLQCESPREFAGYPLLVPRPYHSL------NAITVLQAKCRNGSLPARPVSHPTPYSTD 264

Query: 79  GQQPCLSLPGSSCGCQPRLLL 99
            Q+     P  + G  P  +L
Sbjct: 265 AQRE----PDENSGFNPDEIL 281


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 8   ADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAAL--VSGAAAVLQCETLQEPLP 65
           ++ +  R  +  P++L++ S   L  L  P  H  + AAL  + G A+  Q + L  P  
Sbjct: 595 SESKTTRSNQLVPKKLNISS---LSQLSPPNDHKDIHAALQPMEGMASNQQ-KALPPPPA 650

Query: 66  SLPTAHQSPSALKGQQPCLSLPGSSCG 92
           S+P     PS L    P   +P  S G
Sbjct: 651 SIPPPPPLPSGLGSLSPAPPMPPVSAG 677


>gi|4885237 forkhead box C2 [Homo sapiens]
          Length = 501

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 11  RRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTA 70
           +++ + K + ER HL       S   P T H   A   +    V++ E     LP +   
Sbjct: 169 KKKDVSKEKEERAHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAASPALPVITKV 228

Query: 71  HQ-SP-SALKGQ-QPCLSLPGSS 90
              SP SAL+G  +   S P  S
Sbjct: 229 ETLSPESALQGSPRSAASTPAGS 251


>gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 612

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 47  LVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQP----CLSLPGSSCGCQPRLLLVCQ 102
           LV     +L+C   Q+   +LPTA  +P A+ GQ P     L++P      +P   +   
Sbjct: 169 LVGALQWLLKCA--QDKAQTLPTAPTAPMAVPGQPPYILAALAVPSFVPLLRPEQSVAGW 226

Query: 103 EACRMGR 109
           E+C   R
Sbjct: 227 ESCTPAR 233


>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 11  RRERLE--KSEPERLHLDSKAKL--PSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPS 66
           RR +L+  ++E ER+  + K +L  P  P        AAA    A +   C +   P   
Sbjct: 158 RRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASP 217

Query: 67  LPTAHQ----SPSALKGQQP 82
            P A +    SPS+ + Q P
Sbjct: 218 APRAARKASPSPSSARTQPP 237


>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 11  RRERLE--KSEPERLHLDSKAKL--PSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPS 66
           RR +L+  ++E ER+  + K +L  P  P        AAA    A +   C +   P   
Sbjct: 158 RRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASP 217

Query: 67  LPTAHQ----SPSALKGQQP 82
            P A +    SPS+ + Q P
Sbjct: 218 APRAARKASPSPSSARTQPP 237


>gi|116174734 pappalysin 2 isoform 2 [Homo sapiens]
          Length = 827

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 4   NPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTH 40
           +P+ ADVR+   +   P+R ++  K    +L L  TH
Sbjct: 646 DPQVADVRKTCFDPDSPKRAYMSVKELKEALQLNSTH 682


>gi|116174738 pappalysin 2 isoform 1 [Homo sapiens]
          Length = 1791

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 4   NPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTH 40
           +P+ ADVR+   +   P+R ++  K    +L L  TH
Sbjct: 646 DPQVADVRKTCFDPDSPKRAYMSVKELKEALQLNSTH 682


>gi|194018553 solute carrier family 9 isoform 3 regulator 2 isoform
           a [Homo sapiens]
          Length = 337

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 58  ETLQEPLPSLPTAHQSPSALKGQQPCLS---LPGS 89
           E ++ PLPS  T   SP+ L G   C S   LPGS
Sbjct: 246 EHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGS 280


>gi|71897229 solute carrier family 9 isoform 3 regulator 2 isoform b
           [Homo sapiens]
          Length = 326

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 58  ETLQEPLPSLPTAHQSPSALKGQQPCLS---LPGS 89
           E ++ PLPS  T   SP+ L G   C S   LPGS
Sbjct: 246 EHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGS 280


>gi|18201900 T-box 6 [Homo sapiens]
          Length = 436

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 30  KLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSLPGS 89
           + P L  P    FL     SG  A  +      PLP LP A  +  A    +   SLPG 
Sbjct: 37  RYPELDTPKLDCFL-----SGMEAAPRTLAAHPPLPLLPPAMGTEPAPSAPEALHSLPGV 91

Query: 90  SCGCQPRLL 98
           S   + R L
Sbjct: 92  SLSLENREL 100


>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
          Length = 1447

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 50  GAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSLPGSS 90
           G   +L+CE + EP   +PT H      K QQ    +PG S
Sbjct: 154 GDTVLLKCEVIGEP---MPTIHWQ----KNQQDLTPIPGDS 187


>gi|109689718 abhydrolase domain containing 12 isoform a [Homo
           sapiens]
          Length = 398

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 3   KNPECADVRRERLEKSEPERLH 24
           K+PE   + RE L KSEPE  H
Sbjct: 377 KSPELPRILREFLGKSEPEHQH 398


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 2   KKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQ 61
           +K  EC   +RER +  +P R     + +   L  P      +     G    +   +L 
Sbjct: 223 QKELECEGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSL- 281

Query: 62  EPLPSLPTAHQSPSALKGQ--QPCLSLPG 88
             LP L  A   P  LKG+  +P +  PG
Sbjct: 282 --LPPLEEAAHGPRGLKGEKGEPAVLEPG 308


>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
          Length = 985

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 15  LEKSEPERL-HLDSKAKLPSLPLPVTHHF---LAAAL---VSGAAAVLQCETLQEPLPSL 67
           ++ S+P  +  L   AK P +P P        LA+ L   +  A    Q   L+ P P  
Sbjct: 438 VKASDPHSMPELPRTAKQPPVPPPRKKRISRQLASTLPAPLENAELCTQAMALETPTPGP 497

Query: 68  PTAHQSPSALKGQQ 81
           P   QSP++  G Q
Sbjct: 498 PREGQSPASQAGTQ 511


>gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens]
          Length = 526

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 13  ERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQ 72
           + L++     + + ++A++  LP+ + HHFL    + G    L  E L+ P  +   A +
Sbjct: 394 QALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHILG----LLQEELRGPAKAAAKAPR 449

Query: 73  SPSALKGQQPCLSLPG 88
            P        CL  PG
Sbjct: 450 PPGQPPRASSCLQ-PG 464


>gi|13375682 G protein-coupled receptor 172A [Homo sapiens]
          Length = 445

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 43  LAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKG--------------QQPCLSLPG 88
           L A LV+ AAA      L  P PS+PT         G              Q+P     G
Sbjct: 200 LTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAG 259

Query: 89  SSCGCQPRL--LLVCQEACRMG 108
           ++ G  P+   LL  + AC +G
Sbjct: 260 TTPGPDPKAYQLLSARSACLLG 281


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 18    SEPERLHLDSKAKLPSLPLP-VTHHFLAAALVSGAAAVLQCETLQEPLPSL 67
             S P R  +  K KL S   P +           G AA L C+ +  PLP +
Sbjct: 30514 SRPRRTAMSIKTKLTSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDI 30564


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,301,690
Number of Sequences: 37866
Number of extensions: 266409
Number of successful extensions: 1235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 53
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press