BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169160951 PREDICTED: hypothetical protein [Homo sapiens] (109 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169160951 PREDICTED: hypothetical protein [Homo sapiens] 225 5e-60 gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 32 0.084 gi|239743256 PREDICTED: hypothetical protein XP_002342781 [Homo ... 31 0.24 gi|239508931 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24 gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 31 0.24 gi|239751744 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 28 1.6 gi|27886557 msh homeobox 2 [Homo sapiens] 28 2.1 gi|239757235 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7 gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens] 27 2.7 gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens] 27 2.7 gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 27 3.5 gi|116268101 leucine rich repeat containing 62 [Homo sapiens] 27 3.5 gi|157168329 formin 1 [Homo sapiens] 27 4.6 gi|4885237 forkhead box C2 [Homo sapiens] 27 4.6 gi|239757595 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6 gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6 gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6 gi|116174734 pappalysin 2 isoform 2 [Homo sapiens] 27 4.6 gi|116174738 pappalysin 2 isoform 1 [Homo sapiens] 27 4.6 gi|194018553 solute carrier family 9 isoform 3 regulator 2 isofo... 27 4.6 gi|71897229 solute carrier family 9 isoform 3 regulator 2 isofor... 27 4.6 gi|18201900 T-box 6 [Homo sapiens] 27 4.6 gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 26 6.0 gi|109689718 abhydrolase domain containing 12 isoform a [Homo sa... 26 6.0 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 26 6.0 gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 26 6.0 gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens] 26 6.0 gi|13375682 G protein-coupled receptor 172A [Homo sapiens] 26 6.0 gi|110349719 titin isoform N2-A [Homo sapiens] 26 7.9 >gi|169160951 PREDICTED: hypothetical protein [Homo sapiens] Length = 109 Score = 225 bits (574), Expect = 5e-60 Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL 60 MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL Sbjct: 1 MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETL 60 Query: 61 QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR 109 QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR Sbjct: 61 QEPLPSLPTAHQSPSALKGQQPCLSLPGSSCGCQPRLLLVCQEACRMGR 109 >gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] Length = 931 Score = 32.3 bits (72), Expect = 0.084 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 32 PSLPLPVTHHFLAAALVSGAAAV------LQCETLQEPLPSLPTAHQSPSALKGQQP 82 PSL P T+H A+ G +V LQ E P P L Q PS +KG P Sbjct: 599 PSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPSLIKGVAP 655 >gi|239743256 PREDICTED: hypothetical protein XP_002342781 [Homo sapiens] Length = 142 Score = 30.8 bits (68), Expect = 0.24 Identities = 18/67 (26%), Positives = 27/67 (40%) Query: 27 SKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSL 86 ++ LP +P + L A + + LQ L SL H +PSA + Sbjct: 29 AQGALPHIPSSTSRDLLLAVTPAHPLPLRTLHVLQAQLASLRMTHHTPSAPSTAPTRTLV 88 Query: 87 PGSSCGC 93 S+CGC Sbjct: 89 TASTCGC 95 >gi|239508931 PREDICTED: hypothetical protein [Homo sapiens] Length = 142 Score = 30.8 bits (68), Expect = 0.24 Identities = 18/67 (26%), Positives = 27/67 (40%) Query: 27 SKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSL 86 ++ LP +P + L A + + LQ L SL H +PSA + Sbjct: 29 AQGALPHIPSSTSRDLLLAVTPAHPLPLRTLHVLQAQLASLRMTHHTPSAPSTAPTRTLV 88 Query: 87 PGSSCGC 93 S+CGC Sbjct: 89 TASTCGC 95 >gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] Length = 1711 Score = 30.8 bits (68), Expect = 0.24 Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 1 MKKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVS 49 M PEC+++ + KS ++L L ++ K P +P+ H + AL+S Sbjct: 611 MASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLS 659 >gi|239751744 PREDICTED: hypothetical protein [Homo sapiens] Length = 352 Score = 28.5 bits (62), Expect = 1.2 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 44 AAALVSGAAAVLQCETLQEPL--PSLPTAHQSPSALKGQQPCLSLPGSSCGC 93 AAA A + QC EP S P P A + P +LP CGC Sbjct: 114 AAARPEAIAGLTQCTAHGEPHFPESSPCGTNVPEAANRRHPKTTLPKGLCGC 165 >gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] Length = 1580 Score = 28.1 bits (61), Expect = 1.6 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 61 QEPLPSLPTAH---QSPSAL---KGQQPCLSLPGSSCGCQPRLLLVCQ 102 Q P LP AH PS+L +G QPC S GS PR L Q Sbjct: 1358 QGPESCLPGAHGMGSQPSSLAVVRGYQPCASFGGSRRQAMPRDSLALQ 1405 >gi|27886557 msh homeobox 2 [Homo sapiens] Length = 267 Score = 27.7 bits (60), Expect = 2.1 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 3/40 (7%) Query: 11 RRERLEKSEPERLHLDSKAKLP---SLPLPVTHHFLAAAL 47 + +RL+++E E+L + +K LP SLP P++ AA++ Sbjct: 196 KAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASI 235 >gi|239757235 PREDICTED: hypothetical protein [Homo sapiens] Length = 352 Score = 27.3 bits (59), Expect = 2.7 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Query: 44 AAALVSGAAAVLQCETLQEPL---PSLPTAHQSPSALKGQQPCLSLPGSSCGC 93 AAA A + QC EP PS P P A + P +LP CGC Sbjct: 114 AAARPEAIAGLTQCTAHGEPHFPEPS-PCGTNVPEAANRRHPKTTLPKGLCGC 165 >gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens] Length = 1237 Score = 27.3 bits (59), Expect = 2.7 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 15 LEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSP 74 L+KS L D+ P + LP+ + G+ + + PLPS+ QSP Sbjct: 933 LQKSLKFNLMSDAPGDSPRIHLPLNYP-------PGSPDLGRHYRSNSPLPSIQLQPQSP 985 Query: 75 SALKGQQPCLSLP 87 SA K Q LP Sbjct: 986 SASKKHQVVQDLP 998 >gi|27754771 protocadherin 1 isoform 1 precursor [Homo sapiens] Length = 1060 Score = 27.3 bits (59), Expect = 2.7 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 15 LEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSP 74 L+KS L D+ P + LP+ + G+ + + PLPS+ QSP Sbjct: 933 LQKSLKFNLMSDAPGDSPRIHLPLNYP-------PGSPDLGRHYRSNSPLPSIQLQPQSP 985 Query: 75 SALKGQQPCLSLP 87 SA K Q LP Sbjct: 986 SASKKHQVVQDLP 998 >gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo sapiens] Length = 929 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/67 (31%), Positives = 30/67 (44%) Query: 2 KKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQ 61 KK+ E +++ EK + + + K K P+ PL + LA L S A A L Sbjct: 620 KKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLP 679 Query: 62 EPLPSLP 68 LP LP Sbjct: 680 SLLPVLP 686 >gi|116268101 leucine rich repeat containing 62 [Homo sapiens] Length = 820 Score = 26.9 bits (58), Expect = 3.5 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%) Query: 21 ERLHLDSKAKLPSLPL--PVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALK 78 +RL +S + PL P +H L A VLQ + LP+ P +H +P + Sbjct: 211 DRLQCESPREFAGYPLLVPRPYHSL------NAITVLQAKCRNGSLPARPVSHPTPYSTD 264 Query: 79 GQQPCLSLPGSSCGCQPRLLL 99 Q+ P + G P +L Sbjct: 265 AQRE----PDENSGFNPDEIL 281 >gi|157168329 formin 1 [Homo sapiens] Length = 1196 Score = 26.6 bits (57), Expect = 4.6 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 8 ADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAAL--VSGAAAVLQCETLQEPLP 65 ++ + R + P++L++ S L L P H + AAL + G A+ Q + L P Sbjct: 595 SESKTTRSNQLVPKKLNISS---LSQLSPPNDHKDIHAALQPMEGMASNQQ-KALPPPPA 650 Query: 66 SLPTAHQSPSALKGQQPCLSLPGSSCG 92 S+P PS L P +P S G Sbjct: 651 SIPPPPPLPSGLGSLSPAPPMPPVSAG 677 >gi|4885237 forkhead box C2 [Homo sapiens] Length = 501 Score = 26.6 bits (57), Expect = 4.6 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 11 RRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTA 70 +++ + K + ER HL S P T H A + V++ E LP + Sbjct: 169 KKKDVSKEKEERAHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAASPALPVITKV 228 Query: 71 HQ-SP-SALKGQ-QPCLSLPGSS 90 SP SAL+G + S P S Sbjct: 229 ETLSPESALQGSPRSAASTPAGS 251 >gi|239757595 PREDICTED: hypothetical protein [Homo sapiens] Length = 612 Score = 26.6 bits (57), Expect = 4.6 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 47 LVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQP----CLSLPGSSCGCQPRLLLVCQ 102 LV +L+C Q+ +LPTA +P A+ GQ P L++P +P + Sbjct: 169 LVGALQWLLKCA--QDKAQTLPTAPTAPMAVPGQPPYILAALAVPSFVPLLRPEQSVAGW 226 Query: 103 EACRMGR 109 E+C R Sbjct: 227 ESCTPAR 233 >gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] Length = 627 Score = 26.6 bits (57), Expect = 4.6 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 11 RRERLE--KSEPERLHLDSKAKL--PSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPS 66 RR +L+ ++E ER+ + K +L P P AAA A + C + P Sbjct: 158 RRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASP 217 Query: 67 LPTAHQ----SPSALKGQQP 82 P A + SPS+ + Q P Sbjct: 218 APRAARKASPSPSSARTQPP 237 >gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] Length = 627 Score = 26.6 bits (57), Expect = 4.6 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 11 RRERLE--KSEPERLHLDSKAKL--PSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPS 66 RR +L+ ++E ER+ + K +L P P AAA A + C + P Sbjct: 158 RRAKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASP 217 Query: 67 LPTAHQ----SPSALKGQQP 82 P A + SPS+ + Q P Sbjct: 218 APRAARKASPSPSSARTQPP 237 >gi|116174734 pappalysin 2 isoform 2 [Homo sapiens] Length = 827 Score = 26.6 bits (57), Expect = 4.6 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 4 NPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTH 40 +P+ ADVR+ + P+R ++ K +L L TH Sbjct: 646 DPQVADVRKTCFDPDSPKRAYMSVKELKEALQLNSTH 682 >gi|116174738 pappalysin 2 isoform 1 [Homo sapiens] Length = 1791 Score = 26.6 bits (57), Expect = 4.6 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 4 NPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTH 40 +P+ ADVR+ + P+R ++ K +L L TH Sbjct: 646 DPQVADVRKTCFDPDSPKRAYMSVKELKEALQLNSTH 682 >gi|194018553 solute carrier family 9 isoform 3 regulator 2 isoform a [Homo sapiens] Length = 337 Score = 26.6 bits (57), Expect = 4.6 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Query: 58 ETLQEPLPSLPTAHQSPSALKGQQPCLS---LPGS 89 E ++ PLPS T SP+ L G C S LPGS Sbjct: 246 EHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGS 280 >gi|71897229 solute carrier family 9 isoform 3 regulator 2 isoform b [Homo sapiens] Length = 326 Score = 26.6 bits (57), Expect = 4.6 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Query: 58 ETLQEPLPSLPTAHQSPSALKGQQPCLS---LPGS 89 E ++ PLPS T SP+ L G C S LPGS Sbjct: 246 EHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGS 280 >gi|18201900 T-box 6 [Homo sapiens] Length = 436 Score = 26.6 bits (57), Expect = 4.6 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 30 KLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSLPGS 89 + P L P FL SG A + PLP LP A + A + SLPG Sbjct: 37 RYPELDTPKLDCFL-----SGMEAAPRTLAAHPPLPLLPPAMGTEPAPSAPEALHSLPGV 91 Query: 90 SCGCQPRLL 98 S + R L Sbjct: 92 SLSLENREL 100 >gi|110431348 deleted in colorectal carcinoma [Homo sapiens] Length = 1447 Score = 26.2 bits (56), Expect = 6.0 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%) Query: 50 GAAAVLQCETLQEPLPSLPTAHQSPSALKGQQPCLSLPGSS 90 G +L+CE + EP +PT H K QQ +PG S Sbjct: 154 GDTVLLKCEVIGEP---MPTIHWQ----KNQQDLTPIPGDS 187 >gi|109689718 abhydrolase domain containing 12 isoform a [Homo sapiens] Length = 398 Score = 26.2 bits (56), Expect = 6.0 Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 3 KNPECADVRRERLEKSEPERLH 24 K+PE + RE L KSEPE H Sbjct: 377 KSPELPRILREFLGKSEPEHQH 398 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 26.2 bits (56), Expect = 6.0 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 2 KKNPECADVRRERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQ 61 +K EC +RER + +P R + + L P + G + +L Sbjct: 223 QKELECEGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSL- 281 Query: 62 EPLPSLPTAHQSPSALKGQ--QPCLSLPG 88 LP L A P LKG+ +P + PG Sbjct: 282 --LPPLEEAAHGPRGLKGEKGEPAVLEPG 308 >gi|40353729 Ras and Rab interactor 3 [Homo sapiens] Length = 985 Score = 26.2 bits (56), Expect = 6.0 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 15 LEKSEPERL-HLDSKAKLPSLPLPVTHHF---LAAAL---VSGAAAVLQCETLQEPLPSL 67 ++ S+P + L AK P +P P LA+ L + A Q L+ P P Sbjct: 438 VKASDPHSMPELPRTAKQPPVPPPRKKRISRQLASTLPAPLENAELCTQAMALETPTPGP 497 Query: 68 PTAHQSPSALKGQQ 81 P QSP++ G Q Sbjct: 498 PREGQSPASQAGTQ 511 >gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens] Length = 526 Score = 26.2 bits (56), Expect = 6.0 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 13 ERLEKSEPERLHLDSKAKLPSLPLPVTHHFLAAALVSGAAAVLQCETLQEPLPSLPTAHQ 72 + L++ + + ++A++ LP+ + HHFL + G L E L+ P + A + Sbjct: 394 QALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHILG----LLQEELRGPAKAAAKAPR 449 Query: 73 SPSALKGQQPCLSLPG 88 P CL PG Sbjct: 450 PPGQPPRASSCLQ-PG 464 >gi|13375682 G protein-coupled receptor 172A [Homo sapiens] Length = 445 Score = 26.2 bits (56), Expect = 6.0 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 43 LAAALVSGAAAVLQCETLQEPLPSLPTAHQSPSALKG--------------QQPCLSLPG 88 L A LV+ AAA L P PS+PT G Q+P G Sbjct: 200 LTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAG 259 Query: 89 SSCGCQPRL--LLVCQEACRMG 108 ++ G P+ LL + AC +G Sbjct: 260 TTPGPDPKAYQLLSARSACLLG 281 >gi|110349719 titin isoform N2-A [Homo sapiens] Length = 33423 Score = 25.8 bits (55), Expect = 7.9 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 18 SEPERLHLDSKAKLPSLPLP-VTHHFLAAALVSGAAAVLQCETLQEPLPSL 67 S P R + K KL S P + G AA L C+ + PLP + Sbjct: 30514 SRPRRTAMSIKTKLTSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDI 30564 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.132 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,301,690 Number of Sequences: 37866 Number of extensions: 266409 Number of successful extensions: 1235 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 27 Number of HSP's that attempted gapping in prelim test: 1211 Number of HSP's gapped (non-prelim): 53 length of query: 109 length of database: 18,247,518 effective HSP length: 79 effective length of query: 30 effective length of database: 15,256,104 effective search space: 457683120 effective search space used: 457683120 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.