Guide to the Human Genome
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Name: MSX2 Sequence: fasta or formatted (267aa) NCBI GI: 27886557
Description:

msh homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         29           2
 C cysteine            0.4          1           1
 D aspartate           1.5          4           1
 E glutamate           7.5         20           2
 F phenylalanine       3.7         10           1
 G glycine             6.7         18           2
 H histidine           2.2          6           1
 I isoleucine          1.9          5           1
 K lysine              6.7         18           2
 L leucine             9.4         25           3
 M methionine          2.6          7           1
 N asparagine          1.9          5           1
 P proline            12.4         33           3
 Q glutamine           3.0          8           1
 R arginine            6.0         16           2
 S serine             11.2         30           3
 T threonine           4.5         12           2
 V valine              4.1         11           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   msh homeobox 2 
MSX1                  0.474   msh homeobox 1 
DLX5                  0.138   distal-less homeobox 5 
BARHL1                0.131   BarH-like homeobox 1 
RAX                   0.119   retina and anterior neural fold homeobox 
NKX2-6                0.119   NK2 transcription factor related, locus 6 
NKX2-3                0.115   NK2 transcription factor related, locus 3 
HMX3                  0.113   H6 family homeobox 3 
BARHL2                0.113   BarH-like homeobox 2 
DLX3                  0.111   distal-less homeobox 3 
NKX2-5                0.111   NK2 transcription factor related, locus 5 
DLX2                  0.107   distal-less homeobox 2 
DLX1                  0.107   distal-less homeobox 1 isoform 1 
HMX1                  0.107   homeo box (H6 family) 1 
NKX1-1                0.105   PREDICTED: HPX-153 homeobox 
DLX6                  0.103   distal-less homeobox 6 
DLX4                  0.103   distal-less homeobox 4 isoform a 
DLX4                  0.103   distal-less homeobox 4 isoform b 
HMX2                  0.103   H6 family homeobox 2 
GBX2                  0.103   gastrulation brain homeo box 2 
NKX1-1                0.101   PREDICTED: NK1 homeobox 1 
NKX1-1                0.101   PREDICTED: NK1 homeobox 1 
BARX1                 0.101   BarH-like homeobox 1 
GBX1                  0.101   gastrulation brain homeo box 1 
TLX2                  0.101   T-cell leukemia homeobox 2 
NKX1-2                0.099   NK1 homeobox 2 
NKX1-2                0.099   PREDICTED: NK1 homeobox 2 
NKX1-2                0.099   PREDICTED: NK1 homeobox 2 
NKX1-2                0.099   PREDICTED: NK1 homeobox 2 
MNX1                  0.099   homeo box HB9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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