Guide to the Human Genome
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Name: LOC100293044 Sequence: fasta or formatted (352aa) NCBI GI: 239757235
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         44           3
 C cysteine            4.3         15           1
 D aspartate           2.8         10           2
 E glutamate           2.8         10           1
 F phenylalanine       4.8         17           5
 G glycine             7.4         26           1
 H histidine           4.3         15           2
 I isoleucine          1.4          5           1
 K lysine              4.3         15           2
 L leucine             6.0         21           1
 M methionine          0.6          2           1
 N asparagine          3.4         12           1
 P proline             9.4         33           1
 Q glutamine           3.4         12           2
 R arginine           10.8         38           3
 S serine              6.0         21           2
 T threonine           8.8         31           2
 V valine              4.3         15           1
 W tryptophan          2.0          7           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294424          0.992   PREDICTED: hypothetical protein 
PRCC                  0.018   papillary renal cell carcinoma translocation-associa...
PRCC                  0.018   papillary renal cell carcinoma translocation-associa...
LOC100292370          0.017   PREDICTED: hypothetical protein 
LOC728597             0.014   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.014   PREDICTED: doublecortin domain-containing protein E...
ZNF575                0.014   zinc finger protein 575 
GRIN2D                0.014   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100292293          0.012   PREDICTED: similar to apopolysialoglycoprotein [Hom...
TTBK2                 0.012   tau tubulin kinase 2 
DIDO1                 0.012   death inducer-obliterator 1 isoform c 
DIDO1                 0.012   death inducer-obliterator 1 isoform b 
SRRM2                 0.012   splicing coactivator subunit SRm300 
NACAD                 0.011   PREDICTED: NAC alpha domain containing 
NACAD                 0.011   NAC alpha domain containing 
LOC730183             0.011   PREDICTED: hypothetical protein 
NACAD                 0.011   PREDICTED: NAC alpha domain containing 
NACAD                 0.011   PREDICTED: NAC alpha domain containing 
NACAD                 0.011   PREDICTED: NAC alpha domain containing 
LOC100134365          0.010   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
MUC6                  0.010   mucin 6, gastric 
FBXL6                 0.010   F-box and leucine-rich repeat protein 6 isoform 2 [H...
FBXL6                 0.010   F-box and leucine-rich repeat protein 6 isoform 1 [H...
TERT                  0.010   telomerase reverse transcriptase isoform 2 
TERT                  0.010   telomerase reverse transcriptase isoform 1 
LOC100292591          0.010   PREDICTED: hypothetical protein 
ANKRD36               0.008   PREDICTED: ankyrin repeat domain 36 
SDC3                  0.008   syndecan 3 
ZC3H4                 0.008   zinc finger CCCH-type containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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