Guide to the Human Genome
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Name: FOXC2 Sequence: fasta or formatted (501aa) NCBI GI: 4885237
Description:

forkhead box C2

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         66           4
 C cysteine            1.2          6           1
 D aspartate           2.8         14           2
 E glutamate           5.0         25           2
 F phenylalanine       2.2         11           1
 G glycine             8.2         41           2
 H histidine           4.8         24           3
 I isoleucine          2.2         11           1
 K lysine              4.4         22           3
 L leucine             7.2         36           1
 M methionine          2.4         12           1
 N asparagine          3.8         19           1
 P proline            12.2         61           5
 Q glutamine           4.8         24           3
 R arginine            4.4         22           5
 S serine              8.6         43           1
 T threonine           3.6         18           1
 V valine              3.6         18           2
 W tryptophan          0.6          3           1
 Y tyrosine            5.0         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box C2 
FOXC1                 0.410   forkhead box C1 
FOXD3                 0.159   forkhead box D3 
FOXS1                 0.156   forkhead box S1 
FOXA2                 0.154   forkhead box A2 isoform 2 
FOXA2                 0.154   forkhead box A2 isoform 1 
FOXL1                 0.150   forkhead box L1 
FOXE1                 0.142   forkhead box E1 
FOXE3                 0.141   forkhead box E3 
FOXD1                 0.139   forkhead box D1 
FOXD2                 0.138   forkhead box D2 
FOXA1                 0.138   forkhead box A1 
FOXI1                 0.132   forkhead box I1 isoform a 
FOXI3                 0.132   forkhead box I3 
FOXA3                 0.132   forkhead box A3 
FOXB1                 0.131   forkhead box B1 
FOXD4L1               0.131   forkhead box D4-like 1 
FOXD4L2               0.129   forkhead box D4-like 2 
FOXD4L5               0.129   forkhead box D4-like 5 
FOXD4L4               0.129   forkhead box D4-like 4 
FOXD4L3               0.128   forkhead box D4-like 3 
FOXD4L6               0.128   forkhead box D4-like 6 
FOXL2                 0.127   forkhead box L2 
FOXD4                 0.127   forkhead box D4 
FOXI2                 0.126   forkhead box I2 
FOXB2                 0.124   forkhead box B2 
FOXF1                 0.119   forkhead box F1 
FOXF2                 0.118   forkhead box F2 
FOXG1                 0.117   forkhead box G1 
FOXJ2                 0.108   forkhead box J2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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