Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294424 Sequence: fasta or formatted (352aa) NCBI GI: 239751744
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         44           3
 C cysteine            4.3         15           1
 D aspartate           2.8         10           2
 E glutamate           2.8         10           1
 F phenylalanine       4.5         16           5
 G glycine             7.4         26           1
 H histidine           4.3         15           2
 I isoleucine          1.4          5           1
 K lysine              4.3         15           2
 L leucine             6.2         22           1
 M methionine          0.6          2           1
 N asparagine          3.4         12           1
 P proline             9.1         32           1
 Q glutamine           3.4         12           2
 R arginine           10.8         38           3
 S serine              6.2         22           2
 T threonine           8.8         31           2
 V valine              4.3         15           1
 W tryptophan          2.0          7           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293044          0.994   PREDICTED: hypothetical protein 
PRCC                  0.015   papillary renal cell carcinoma translocation-associa...
PRCC                  0.015   papillary renal cell carcinoma translocation-associa...
LOC728597             0.015   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.015   PREDICTED: doublecortin domain-containing protein E...
TTBK2                 0.015   tau tubulin kinase 2 
SRRM2                 0.015   splicing coactivator subunit SRm300 
LOC100292293          0.014   PREDICTED: similar to apopolysialoglycoprotein [Hom...
ZNF575                0.014   zinc finger protein 575 
LOC100292370          0.014   PREDICTED: hypothetical protein 
GRIN2D                0.014   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100134365          0.011   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC730183             0.011   PREDICTED: hypothetical protein 
SDC3                  0.011   syndecan 3 
NACAD                 0.010   NAC alpha domain containing 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
NACAD                 0.010   PREDICTED: NAC alpha domain containing 
DIDO1                 0.010   death inducer-obliterator 1 isoform c 
DIDO1                 0.010   death inducer-obliterator 1 isoform b 
ZC3H4                 0.010   zinc finger CCCH-type containing 4 
TACC2                 0.010   transforming, acidic coiled-coil containing protein...
LOC100292591          0.010   PREDICTED: hypothetical protein 
FBXL6                 0.010   F-box and leucine-rich repeat protein 6 isoform 2 [H...
FBXL6                 0.010   F-box and leucine-rich repeat protein 6 isoform 1 [H...
ZNF469                0.008   zinc finger protein 469 
ROBO2                 0.008   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.008   roundabout, axon guidance receptor, homolog 2 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press